MS017692 (gene) Bitter gourd (TR) v1

Overview
NameMS017692
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionMitochondrial import inner membrane translocase subunit
Locationscaffold373: 1572004 .. 1572117 (-)
RNA-Seq ExpressionMS017692
SyntenyMS017692
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTCATTTTCATCGCCTTCAAGCGGCCCTTCTTCCCAATTTTCTGCCCATGAATTCAAGGATCAGCTCAAGACTCAACTTGCCCAGGCCTATGCCGAGGAGTTCCTCGAG

mRNA sequence

ATGGATTCATTTTCATCGCCTTCAAGCGGCCCTTCTTCCCAATTTTCTGCCCATGAATTCAAGGATCAGCTCAAGACTCAACTTGCCCAGGCCTATGCCGAGGAGTTCCTCGAG

Coding sequence (CDS)

ATGGATTCATTTTCATCGCCTTCAAGCGGCCCTTCTTCCCAATTTTCTGCCCATGAATTCAAGGATCAGCTCAAGACTCAACTTGCCCAGGCCTATGCCGAGGAGTTCCTCGAG

Protein sequence

MDSFSSPSSGPSSQFSAHEFKDQLKTQLAQAYAEEFLE
Homology
BLAST of MS017692 vs. NCBI nr
Match: XP_022159838.1 (mitochondrial import inner membrane translocase subunit Tim13 [Momordica charantia])

HSP 1 Score: 73.2 bits (178), Expect = 5.5e-10
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0

Query: 1  MDSFSSPSSGPSSQFSAHEFKDQLKTQLAQAYAEEFLE 39
          MDSFSSPSSGPSSQFSAHEFKDQLKTQLAQAYAEEFLE
Sbjct: 1  MDSFSSPSSGPSSQFSAHEFKDQLKTQLAQAYAEEFLE 38

BLAST of MS017692 vs. NCBI nr
Match: XP_038906948.1 (mitochondrial import inner membrane translocase subunit TIM13 [Benincasa hispida])

HSP 1 Score: 66.2 bits (160), Expect = 6.8e-08
Identity = 35/38 (92.11%), Postives = 37/38 (97.37%), Query Frame = 0

Query: 1  MDSFSSPSSGPSSQFSAHEFKDQLKTQLAQAYAEEFLE 39
          MDSFSSPSSG SSQFSA+EF+DQLKTQLAQAYAEEFLE
Sbjct: 1  MDSFSSPSSGSSSQFSANEFRDQLKTQLAQAYAEEFLE 38

BLAST of MS017692 vs. NCBI nr
Match: XP_022929050.1 (uncharacterized protein LOC111435758 isoform X4 [Cucurbita moschata])

HSP 1 Score: 64.3 bits (155), Expect = 2.6e-07
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 0

Query: 1  MDSFSSPSSGPSSQFSAHEFKDQLKTQLAQAYAEEFLE 39
          MDSFSSPSSG SSQFS +EF+DQLKTQLAQAYAEEFLE
Sbjct: 1  MDSFSSPSSGSSSQFSPNEFRDQLKTQLAQAYAEEFLE 38

BLAST of MS017692 vs. NCBI nr
Match: KAG7017060.1 (Mitochondrial import inner membrane translocase subunit TIM13, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 64.3 bits (155), Expect = 2.6e-07
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 0

Query: 1  MDSFSSPSSGPSSQFSAHEFKDQLKTQLAQAYAEEFLE 39
          MDSFSSPSSG SSQFS +EF+DQLKTQLAQAYAEEFLE
Sbjct: 1  MDSFSSPSSGSSSQFSPNEFRDQLKTQLAQAYAEEFLE 38

BLAST of MS017692 vs. NCBI nr
Match: XP_022929052.1 (mitochondrial import inner membrane translocase subunit TIM13-like isoform X6 [Cucurbita moschata] >XP_022970119.1 mitochondrial import inner membrane translocase subunit TIM13 [Cucurbita maxima] >KAG6579600.1 Mitochondrial import inner membrane translocase subunit TIM13, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 64.3 bits (155), Expect = 2.6e-07
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 0

Query: 1  MDSFSSPSSGPSSQFSAHEFKDQLKTQLAQAYAEEFLE 39
          MDSFSSPSSG SSQFS +EF+DQLKTQLAQAYAEEFLE
Sbjct: 1  MDSFSSPSSGSSSQFSPNEFRDQLKTQLAQAYAEEFLE 38

BLAST of MS017692 vs. ExPASy TrEMBL
Match: A0A6J1DZZ6 (Mitochondrial import inner membrane translocase subunit OS=Momordica charantia OX=3673 GN=LOC111026139 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.7e-10
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0

Query: 1  MDSFSSPSSGPSSQFSAHEFKDQLKTQLAQAYAEEFLE 39
          MDSFSSPSSGPSSQFSAHEFKDQLKTQLAQAYAEEFLE
Sbjct: 1  MDSFSSPSSGPSSQFSAHEFKDQLKTQLAQAYAEEFLE 38

BLAST of MS017692 vs. ExPASy TrEMBL
Match: A0A5D3C411 (Mitochondrial import inner membrane translocase subunit Tim13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G001350 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-07
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 0

Query: 1  MDSFSSPSSGPSSQFSAHEFKDQLKTQLAQAYAEEFLE 39
          MDSFSSPSSG S QFSA+EF+DQLKTQLAQAYAEEFLE
Sbjct: 1  MDSFSSPSSGSSPQFSANEFRDQLKTQLAQAYAEEFLE 38

BLAST of MS017692 vs. ExPASy TrEMBL
Match: A0A6J1I4K9 (Mitochondrial import inner membrane translocase subunit OS=Cucurbita maxima OX=3661 GN=LOC111469108 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-07
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 0

Query: 1  MDSFSSPSSGPSSQFSAHEFKDQLKTQLAQAYAEEFLE 39
          MDSFSSPSSG SSQFS +EF+DQLKTQLAQAYAEEFLE
Sbjct: 1  MDSFSSPSSGSSSQFSPNEFRDQLKTQLAQAYAEEFLE 38

BLAST of MS017692 vs. ExPASy TrEMBL
Match: A0A0A0KK66 (Mitochondrial import inner membrane translocase subunit OS=Cucumis sativus OX=3659 GN=Csa_5G146860 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-07
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 0

Query: 1  MDSFSSPSSGPSSQFSAHEFKDQLKTQLAQAYAEEFLE 39
          MDSFSSPSSG S QFSA+EF+DQLKTQLAQAYAEEFLE
Sbjct: 1  MDSFSSPSSGSSPQFSANEFRDQLKTQLAQAYAEEFLE 38

BLAST of MS017692 vs. ExPASy TrEMBL
Match: A0A6J1ELP2 (Mitochondrial import inner membrane translocase subunit OS=Cucurbita moschata OX=3662 GN=LOC111435758 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-07
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 0

Query: 1  MDSFSSPSSGPSSQFSAHEFKDQLKTQLAQAYAEEFLE 39
          MDSFSSPSSG SSQFS +EF+DQLKTQLAQAYAEEFLE
Sbjct: 1  MDSFSSPSSGSSSQFSPNEFRDQLKTQLAQAYAEEFLE 38

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022159838.15.5e-10100.00mitochondrial import inner membrane translocase subunit Tim13 [Momordica charant... [more]
XP_038906948.16.8e-0892.11mitochondrial import inner membrane translocase subunit TIM13 [Benincasa hispida... [more]
XP_022929050.12.6e-0789.47uncharacterized protein LOC111435758 isoform X4 [Cucurbita moschata][more]
KAG7017060.12.6e-0789.47Mitochondrial import inner membrane translocase subunit TIM13, partial [Cucurbit... [more]
XP_022929052.12.6e-0789.47mitochondrial import inner membrane translocase subunit TIM13-like isoform X6 [C... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DZZ62.7e-10100.00Mitochondrial import inner membrane translocase subunit OS=Momordica charantia O... [more]
A0A5D3C4111.2e-0789.47Mitochondrial import inner membrane translocase subunit Tim13 OS=Cucumis melo va... [more]
A0A6J1I4K91.2e-0789.47Mitochondrial import inner membrane translocase subunit OS=Cucurbita maxima OX=3... [more]
A0A0A0KK661.2e-0789.47Mitochondrial import inner membrane translocase subunit OS=Cucumis sativus OX=36... [more]
A0A6J1ELP21.2e-0789.47Mitochondrial import inner membrane translocase subunit OS=Cucurbita moschata OX... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS017692.1MS017692.1mRNA