MS009584 (gene) Bitter gourd (TR) v1

Overview


Name	MS009584
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	protein Brevis radix-like 2
Location	scaffold813: 2504051 .. 2504266 (+)
RNA-Seq Expression	MS009584
Synteny	MS009584

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGAAGCCCATGGGAGCATACGATAACTGCAAGCCATGCTCAGGGTCGTCTATAGATAATCAGCAGTGGAAATATAAAGAGTCTGTTCTAATACCGCCTCAAACTCAGTTTCTGATGCTCCTATCGCAGGACTGGGAGCATGCTTTTGACACTAACGCGGCGTGGAAAGGAATTAGGGTAAGGCTAAAGGCGTTGTCCAGTGGAGAAGGGACGCCT

mRNA sequence

TTGAAGCCCATGGGAGCATACGATAACTGCAAGCCATGCTCAGGGTCGTCTATAGATAATCAGCAGTGGAAATATAAAGAGTCTGTTCTAATACCGCCTCAAACTCAGTTTCTGATGCTCCTATCGCAGGACTGGGAGCATGCTTTTGACACTAACGCGGCGTGGAAAGGAATTAGGGTAAGGCTAAAGGCGTTGTCCAGTGGAGAAGGGACGCCT

Coding sequence (CDS)

TTGAAGCCCATGGGAGCATACGATAACTGCAAGCCATGCTCAGGGTCGTCTATAGATAATCAGCAGTGGAAATATAAAGAGTCTGTTCTAATACCGCCTCAAACTCAGTTTCTGATGCTCCTATCGCAGGACTGGGAGCATGCTTTTGACACTAACGCGGCGTGGAAAGGAATTAGGGTAAGGCTAAAGGCGTTGTCCAGTGGAGAAGGGACGCCT

Protein sequence

LKPMGAYDNCKPCSGSSIDNQQWKYKESVLIPPQTQFLMLLSQDWEHAFDTNAAWKGIRVRLKALSSGEGTP

Homology

[Close]

BLAST of MS009584 vs. NCBI nr
Match: KAG6575453.1 (Protein Brevis radix-like 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 65.9 bits (159), Expect = 1.7e-07
Identity = 34/72 (47.22%), Postives = 41/72 (56.94%), Query Frame = 0


Query: 1   LKPMGAYDNCKPCSGSSIDNQQWKYKESVLIPPQTQFLMLLSQDWEHAFDTNAAWKGIRV 60
           LK  GAY NCKPCSGSS DN+++KY ES       +F     ++           K +  
Sbjct: 110 LKASGAYKNCKPCSGSSSDNRKYKYAESDSASDSARFHCPYRRNGSSNSTPRQWGKEMEA 169

Query: 61  RLKALSSGEGTP 73
           RLKALSSGEGTP
Sbjct: 170 RLKALSSGEGTP 181

[Close]

BLAST of MS009584 vs. NCBI nr
Match: XP_022954276.1 (protein Brevis radix-like 3 [Cucurbita moschata] >XP_022954277.1 protein Brevis radix-like 3 [Cucurbita moschata])

HSP 1 Score: 65.9 bits (159), Expect = 1.7e-07
Identity = 34/72 (47.22%), Postives = 41/72 (56.94%), Query Frame = 0


Query: 1   LKPMGAYDNCKPCSGSSIDNQQWKYKESVLIPPQTQFLMLLSQDWEHAFDTNAAWKGIRV 60
           LK  GAY NCKPCSGSS DN+++KY ES       +F     ++           K +  
Sbjct: 46  LKASGAYKNCKPCSGSSSDNRKYKYAESDSASDSARFHCPYRRNGSSNSTPRQWGKEMEA 105

Query: 61  RLKALSSGEGTP 73
           RLKALSSGEGTP
Sbjct: 106 RLKALSSGEGTP 117

[Close]

BLAST of MS009584 vs. NCBI nr
Match: XP_022992309.1 (protein Brevis radix-like 2 [Cucurbita maxima] >XP_022992310.1 protein Brevis radix-like 2 [Cucurbita maxima])

HSP 1 Score: 65.9 bits (159), Expect = 1.7e-07
Identity = 34/72 (47.22%), Postives = 41/72 (56.94%), Query Frame = 0


Query: 1   LKPMGAYDNCKPCSGSSIDNQQWKYKESVLIPPQTQFLMLLSQDWEHAFDTNAAWKGIRV 60
           LK  GAY NCKPCSGSS DN+++KY ES       +F     ++           K +  
Sbjct: 46  LKASGAYKNCKPCSGSSSDNRKYKYAESDSASDSARFHCPYRRNGSSNSTPRQWGKEMEA 105

Query: 61  RLKALSSGEGTP 73
           RLKALSSGEGTP
Sbjct: 106 RLKALSSGEGTP 117

[Close]

BLAST of MS009584 vs. NCBI nr
Match: KAG7013997.1 (Protein Brevis radix-like 3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 65.9 bits (159), Expect = 1.7e-07
Identity = 34/72 (47.22%), Postives = 41/72 (56.94%), Query Frame = 0


Query: 1   LKPMGAYDNCKPCSGSSIDNQQWKYKESVLIPPQTQFLMLLSQDWEHAFDTNAAWKGIRV 60
           LK  GAY NCKPCSGSS DN+++KY ES       +F     ++           K +  
Sbjct: 46  LKASGAYKNCKPCSGSSSDNRKYKYAESDSASDSARFHCPYRRNGSSNSTPRQWGKEMEA 105

Query: 61  RLKALSSGEGTP 73
           RLKALSSGEGTP
Sbjct: 106 RLKALSSGEGTP 117

[Close]

BLAST of MS009584 vs. NCBI nr
Match: XP_023547515.1 (protein Brevis radix-like 3 [Cucurbita pepo subsp. pepo] >XP_023547516.1 protein Brevis radix-like 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 65.9 bits (159), Expect = 1.7e-07
Identity = 34/72 (47.22%), Postives = 41/72 (56.94%), Query Frame = 0


Query: 1   LKPMGAYDNCKPCSGSSIDNQQWKYKESVLIPPQTQFLMLLSQDWEHAFDTNAAWKGIRV 60
           LK  GAY NCKPCSGSS DN+++KY ES       +F     ++           K +  
Sbjct: 46  LKASGAYKNCKPCSGSSSDNRKYKYAESDSASDSARFHCPYRRNGSSNSTPRQWGKEMEA 105

Query: 61  RLKALSSGEGTP 73
           RLKALSSGEGTP
Sbjct: 106 RLKALSSGEGTP 117

[Close]

BLAST of MS009584 vs. ExPASy Swiss-Prot
Match: Q8GYL9 (Protein Brevis radix-like 2 OS=Arabidopsis thaliana OX=3702 GN=BRXL2 PE=2 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 9.6e-06
Identity = 26/72 (36.11%), Postives = 35/72 (48.61%), Query Frame = 0


Query: 1   LKPMGAYDNCKPCSGSSIDNQQWKYKESVLIPPQTQFLMLLSQDWEHAFDTNAAWKGIRV 60
           +K  GAY +CKPCSGSS  N+   Y +S +     +F     +    +       K +  
Sbjct: 52  VKASGAYKSCKPCSGSSNQNKNRSYADSDVASNSGRFRYAYKRAGSGSSTPKILGKEMES 111

Query: 61  RLKALSSGEGTP 73
           RLK   SGEGTP
Sbjct: 112 RLKGFLSGEGTP 123

[Close]

BLAST of MS009584 vs. ExPASy Swiss-Prot
Match: Q5HZ09 (Protein Brevis radix-like 3 OS=Arabidopsis thaliana OX=3702 GN=BRXL3 PE=2 SV=2)

HSP 1 Score: 47.0 bits (110), Expect = 1.1e-04
Identity = 29/73 (39.73%), Postives = 36/73 (49.32%), Query Frame = 0


Query: 1   LKPMGAYDNCKPCSGSSIDNQQWKYKESVLIPPQTQFLMLLSQDWEHAFDTNAAW-KGIR 60
           +K  GAY NCKPCSG++  NQ   Y +S       +F     Q    A  T   W   + 
Sbjct: 50  VKASGAYKNCKPCSGTTNRNQNRNYADSDAASDSGRF-HYSYQRAGTATSTPKIWGNEME 109

Query: 61  VRLKALSSGEGTP 73
            RLK +SS EGTP
Sbjct: 110 SRLKGISSEEGTP 121

[Close]

BLAST of MS009584 vs. ExPASy TrEMBL
Match: A0A6J1JVC6 (protein Brevis radix-like 2 OS=Cucurbita maxima OX=3661 GN=LOC111488661 PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 8.1e-08
Identity = 34/72 (47.22%), Postives = 41/72 (56.94%), Query Frame = 0


Query: 1   LKPMGAYDNCKPCSGSSIDNQQWKYKESVLIPPQTQFLMLLSQDWEHAFDTNAAWKGIRV 60
           LK  GAY NCKPCSGSS DN+++KY ES       +F     ++           K +  
Sbjct: 46  LKASGAYKNCKPCSGSSSDNRKYKYAESDSASDSARFHCPYRRNGSSNSTPRQWGKEMEA 105

Query: 61  RLKALSSGEGTP 73
           RLKALSSGEGTP
Sbjct: 106 RLKALSSGEGTP 117

[Close]

BLAST of MS009584 vs. ExPASy TrEMBL
Match: A0A6J1GQL1 (protein Brevis radix-like 3 OS=Cucurbita moschata OX=3662 GN=LOC111456580 PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 8.1e-08
Identity = 34/72 (47.22%), Postives = 41/72 (56.94%), Query Frame = 0


Query: 1   LKPMGAYDNCKPCSGSSIDNQQWKYKESVLIPPQTQFLMLLSQDWEHAFDTNAAWKGIRV 60
           LK  GAY NCKPCSGSS DN+++KY ES       +F     ++           K +  
Sbjct: 46  LKASGAYKNCKPCSGSSSDNRKYKYAESDSASDSARFHCPYRRNGSSNSTPRQWGKEMEA 105

Query: 61  RLKALSSGEGTP 73
           RLKALSSGEGTP
Sbjct: 106 RLKALSSGEGTP 117

[Close]

BLAST of MS009584 vs. ExPASy TrEMBL
Match: A0A6J1DMT8 (protein Brevis radix-like 2 OS=Momordica charantia OX=3673 GN=LOC111021847 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.1e-07
Identity = 34/72 (47.22%), Postives = 40/72 (55.56%), Query Frame = 0


Query: 1   LKPMGAYDNCKPCSGSSIDNQQWKYKESVLIPPQTQFLMLLSQDWEHAFDTNAAWKGIRV 60
           LK  GAY NCKPCSGSS DN+++KY ES       +F     +            K +  
Sbjct: 46  LKASGAYKNCKPCSGSSSDNRKYKYAESDSASDSARFHCSYRRTGSSNSTPRQWGKEMEA 105

Query: 61  RLKALSSGEGTP 73
           RLKALSSGEGTP
Sbjct: 106 RLKALSSGEGTP 117

[Close]

BLAST of MS009584 vs. ExPASy TrEMBL
Match: A0A1S3CGN4 (protein Brevis radix-like 2 OS=Cucumis melo OX=3656 GN=LOC103500705 PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.8e-07
Identity = 34/72 (47.22%), Postives = 40/72 (55.56%), Query Frame = 0


Query: 1   LKPMGAYDNCKPCSGSSIDNQQWKYKESVLIPPQTQFLMLLSQDWEHAFDTNAAWKGIRV 60
           LK  GAY NCKPCSGSS DN+++KY ES       +F     +            K +  
Sbjct: 46  LKASGAYKNCKPCSGSSSDNRKYKYAESDSASDSARFHCSYKRTGSSNSTPRQWGKEMEG 105

Query: 61  RLKALSSGEGTP 73
           RLKALSSGEGTP
Sbjct: 106 RLKALSSGEGTP 117

[Close]

BLAST of MS009584 vs. ExPASy TrEMBL
Match: A0A5D3BWP1 (Protein Brevis radix-like 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G001140 PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.8e-07
Identity = 34/72 (47.22%), Postives = 40/72 (55.56%), Query Frame = 0


Query: 1   LKPMGAYDNCKPCSGSSIDNQQWKYKESVLIPPQTQFLMLLSQDWEHAFDTNAAWKGIRV 60
           LK  GAY NCKPCSGSS DN+++KY ES       +F     +            K +  
Sbjct: 46  LKASGAYKNCKPCSGSSSDNRKYKYAESDSASDSARFHCSYKRTGSSNSTPRQWGKEMEG 105

Query: 61  RLKALSSGEGTP 73
           RLKALSSGEGTP
Sbjct: 106 RLKALSSGEGTP 117

[Close]

BLAST of MS009584 vs. TAIR 10
Match: AT3G14000.1 (DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein )

HSP 1 Score: 50.4 bits (119), Expect = 6.8e-07
Identity = 26/72 (36.11%), Postives = 35/72 (48.61%), Query Frame = 0


Query: 1   LKPMGAYDNCKPCSGSSIDNQQWKYKESVLIPPQTQFLMLLSQDWEHAFDTNAAWKGIRV 60
           +K  GAY +CKPCSGSS  N+   Y +S +     +F     +    +       K +  
Sbjct: 52  VKASGAYKSCKPCSGSSNQNKNRSYADSDVASNSGRFRYAYKRAGSGSSTPKILGKEMES 111

Query: 61  RLKALSSGEGTP 73
           RLK   SGEGTP
Sbjct: 112 RLKGFLSGEGTP 123

[Close]

BLAST of MS009584 vs. TAIR 10
Match: AT3G14000.2 (DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein )

HSP 1 Score: 50.4 bits (119), Expect = 6.8e-07
Identity = 26/72 (36.11%), Postives = 35/72 (48.61%), Query Frame = 0


Query: 1   LKPMGAYDNCKPCSGSSIDNQQWKYKESVLIPPQTQFLMLLSQDWEHAFDTNAAWKGIRV 60
           +K  GAY +CKPCSGSS  N+   Y +S +     +F     +    +       K +  
Sbjct: 52  VKASGAYKSCKPCSGSSNQNKNRSYADSDVASNSGRFRYAYKRAGSGSSTPKILGKEMES 111

Query: 61  RLKALSSGEGTP 73
           RLK   SGEGTP
Sbjct: 112 RLKGFLSGEGTP 123

[Close]

BLAST of MS009584 vs. TAIR 10
Match: AT1G54180.1 (BREVIS RADIX-like 3 )

HSP 1 Score: 47.0 bits (110), Expect = 7.5e-06
Identity = 29/73 (39.73%), Postives = 36/73 (49.32%), Query Frame = 0


Query: 1   LKPMGAYDNCKPCSGSSIDNQQWKYKESVLIPPQTQFLMLLSQDWEHAFDTNAAW-KGIR 60
           +K  GAY NCKPCSG++  NQ   Y +S       +F     Q    A  T   W   + 
Sbjct: 50  VKASGAYKNCKPCSGTTNRNQNRNYADSDAASDSGRF-HYSYQRAGTATSTPKIWGNEME 109

Query: 61  VRLKALSSGEGTP 73
            RLK +SS EGTP
Sbjct: 110 SRLKGISSEEGTP 121

[Close]

BLAST of MS009584 vs. TAIR 10
Match: AT1G54180.2 (BREVIS RADIX-like 3 )

HSP 1 Score: 47.0 bits (110), Expect = 7.5e-06
Identity = 29/73 (39.73%), Postives = 36/73 (49.32%), Query Frame = 0


Query: 1   LKPMGAYDNCKPCSGSSIDNQQWKYKESVLIPPQTQFLMLLSQDWEHAFDTNAAW-KGIR 60
           +K  GAY NCKPCSG++  NQ   Y +S       +F     Q    A  T   W   + 
Sbjct: 50  VKASGAYKNCKPCSGTTNRNQNRNYADSDAASDSGRF-HYSYQRAGTATSTPKIWGNEME 109

Query: 61  VRLKALSSGEGTP 73
            RLK +SS EGTP
Sbjct: 110 SRLKGISSEEGTP 121

The following BLAST results are available for this feature:

BLAST of MS009584 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6575453.1	1.7e-07	47.22	Protein Brevis radix-like 3, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022954276.1	1.7e-07	47.22	protein Brevis radix-like 3 [Cucurbita moschata] >XP_022954277.1 protein Brevis ...	[more]
XP_022992309.1	1.7e-07	47.22	protein Brevis radix-like 2 [Cucurbita maxima] >XP_022992310.1 protein Brevis ra...	[more]
KAG7013997.1	1.7e-07	47.22	Protein Brevis radix-like 3 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023547515.1	1.7e-07	47.22	protein Brevis radix-like 3 [Cucurbita pepo subsp. pepo] >XP_023547516.1 protein...	[more]

BLAST of MS009584 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GYL9	9.6e-06	36.11	Protein Brevis radix-like 2 OS=Arabidopsis thaliana OX=3702 GN=BRXL2 PE=2 SV=1	[more]
Q5HZ09	1.1e-04	39.73	Protein Brevis radix-like 3 OS=Arabidopsis thaliana OX=3702 GN=BRXL3 PE=2 SV=2	[more]

BLAST of MS009584 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JVC6	8.1e-08	47.22	protein Brevis radix-like 2 OS=Cucurbita maxima OX=3661 GN=LOC111488661 PE=3 SV=...	[more]
A0A6J1GQL1	8.1e-08	47.22	protein Brevis radix-like 3 OS=Cucurbita moschata OX=3662 GN=LOC111456580 PE=3 S...	[more]
A0A6J1DMT8	1.1e-07	47.22	protein Brevis radix-like 2 OS=Momordica charantia OX=3673 GN=LOC111021847 PE=3 ...	[more]
A0A1S3CGN4	1.8e-07	47.22	protein Brevis radix-like 2 OS=Cucumis melo OX=3656 GN=LOC103500705 PE=3 SV=1	[more]
A0A5D3BWP1	1.8e-07	47.22	Protein Brevis radix-like 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]

BLAST of MS009584 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G14000.1	6.8e-07	36.11	DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain ...	[more]
AT3G14000.2	6.8e-07	36.11	DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain ...	[more]
AT1G54180.1	7.5e-06	39.73	BREVIS RADIX-like 3	[more]
AT1G54180.2	7.5e-06	39.73	BREVIS RADIX-like 3	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS009584.1	MS009584.1	mRNA