MS008137 (gene) Bitter gourd (TR) v1

Overview


Name	MS008137
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Expression protein
Location	scaffold703: 527081 .. 527368 (+)
RNA-Seq Expression	MS008137
Synteny	MS008137

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCAACTGTCTACGGCGGGACGGGGCGGCGGAGCGGTGGGCCGGCGAGGAGTGGGGATTTTTGGCCGAGGAAAAGCAGGGCTCTGCGGCGGCGCCCACGGCGGCGGCAACGGAGGTGAAGATCAAGATCACGAAGAAGCAGCTGGAGGAGCTGCTGGGGAAGGCGGATGTTAAGGGGCTGTCCGTACAGCAGGTTCTGGCTCAGTTGATCGCCGTCGGCGACCAGTTTCACGAGTCTCGCCACCGGCCGTGGCGGCCGGTGTTGCAGAGCATCCCTGAAATGGAC

mRNA sequence

ATGGGCAACTGTCTACGGCGGGACGGGGCGGCGGAGCGGTGGGCCGGCGAGGAGTGGGGATTTTTGGCCGAGGAAAAGCAGGGCTCTGCGGCGGCGCCCACGGCGGCGGCAACGGAGGTGAAGATCAAGATCACGAAGAAGCAGCTGGAGGAGCTGCTGGGGAAGGCGGATGTTAAGGGGCTGTCCGTACAGCAGGTTCTGGCTCAGTTGATCGCCGTCGGCGACCAGTTTCACGAGTCTCGCCACCGGCCGTGGCGGCCGGTGTTGCAGAGCATCCCTGAAATGGAC

Coding sequence (CDS)

ATGGGCAACTGTCTACGGCGGGACGGGGCGGCGGAGCGGTGGGCCGGCGAGGAGTGGGGATTTTTGGCCGAGGAAAAGCAGGGCTCTGCGGCGGCGCCCACGGCGGCGGCAACGGAGGTGAAGATCAAGATCACGAAGAAGCAGCTGGAGGAGCTGCTGGGGAAGGCGGATGTTAAGGGGCTGTCCGTACAGCAGGTTCTGGCTCAGTTGATCGCCGTCGGCGACCAGTTTCACGAGTCTCGCCACCGGCCGTGGCGGCCGGTGTTGCAGAGCATCCCTGAAATGGAC

Protein sequence

MGNCLRRDGAAERWAGEEWGFLAEEKQGSAAAPTAAATEVKIKITKKQLEELLGKADVKGLSVQQVLAQLIAVGDQFHESRHRPWRPVLQSIPEMD

Homology

[Close]

BLAST of MS008137 vs. NCBI nr
Match: XP_022139678.1 (uncharacterized protein LOC111010526 [Momordica charantia])

HSP 1 Score: 192.6 bits (488), Expect = 1.6e-45
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1  MGNCLRRDGAAERWAGEEWGFLAEEKQGSAAAPTAAATEVKIKITKKQLEELLGKADVKG 60
          MGNCLRRDGAAERWAGEEWGFLAEEKQGSAAAPTAAATEVKIKITKKQLEELLGKADVKG
Sbjct: 1  MGNCLRRDGAAERWAGEEWGFLAEEKQGSAAAPTAAATEVKIKITKKQLEELLGKADVKG 60

Query: 61 LSVQQVLAQLIAVGDQFHESRHRPWRPVLQSIPEMD 97
          LSVQQVLAQLIAVGDQFHESRHRPWRPVLQSIPEMD
Sbjct: 61 LSVQQVLAQLIAVGDQFHESRHRPWRPVLQSIPEMD 96

[Close]

BLAST of MS008137 vs. NCBI nr
Match: XP_022936225.1 (uncharacterized protein LOC111442898 [Cucurbita moschata] >KAG6592042.1 hypothetical protein SDJN03_14388, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024918.1 hypothetical protein SDJN02_13738, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 145.2 bits (365), Expect = 2.9e-31
Identity = 75/104 (72.12%), Postives = 81/104 (77.88%), Query Frame = 0


Query: 1   MGNCLRRDGAAERWAGEEWGFLAEEKQG--------SAAAPTAAATEVKIKITKKQLEEL 60
           MGNCLRRDGAA +WAGEEW FLA E  G             + AATEVKIKITK+QLEEL
Sbjct: 1   MGNCLRRDGAAAQWAGEEWDFLAAEDDGREGLLGEIEKKKSSTAATEVKIKITKRQLEEL 60

Query: 61  LGKADVKGLSVQQVLAQLIAVGDQFHESRHRPWRPVLQSIPEMD 97
           LGK D+K +SVQQVLAQLI VGDQFHESRHR WRPVLQSIPE+D
Sbjct: 61  LGKVDIKEMSVQQVLAQLIGVGDQFHESRHRHWRPVLQSIPEVD 104

[Close]

BLAST of MS008137 vs. NCBI nr
Match: XP_023536165.1 (uncharacterized protein LOC111797410 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 141.7 bits (356), Expect = 3.2e-30
Identity = 73/104 (70.19%), Postives = 80/104 (76.92%), Query Frame = 0


Query: 1   MGNCLRRDGAAERWAGEEWGFLAEEKQG--------SAAAPTAAATEVKIKITKKQLEEL 60
           MGNC+RRDGAA +WAGEEW FLA E  G             + AATEVKIKITK+QLEEL
Sbjct: 1   MGNCIRRDGAAAQWAGEEWDFLAAEDDGREGLLGEIEKKKSSTAATEVKIKITKRQLEEL 60

Query: 61  LGKADVKGLSVQQVLAQLIAVGDQFHESRHRPWRPVLQSIPEMD 97
           LGK D+K +SVQQVLAQLI V DQFHESRHR WRPVLQSIPE+D
Sbjct: 61  LGKVDIKEMSVQQVLAQLIGVDDQFHESRHRHWRPVLQSIPEVD 104

[Close]

BLAST of MS008137 vs. NCBI nr
Match: XP_022975730.1 (uncharacterized protein LOC111475920 [Cucurbita maxima])

HSP 1 Score: 141.4 bits (355), Expect = 4.2e-30
Identity = 73/104 (70.19%), Postives = 79/104 (75.96%), Query Frame = 0


Query: 1   MGNCLRRDGAAERWAGEEWGFLAEEKQG--------SAAAPTAAATEVKIKITKKQLEEL 60
           MGNCLRRDGAA +WAGEEW  LA E  G             +  ATEVKIKITK+QLEEL
Sbjct: 1   MGNCLRRDGAAAQWAGEEWDLLAAEDDGREGLLGENEKKKSSTTATEVKIKITKRQLEEL 60

Query: 61  LGKADVKGLSVQQVLAQLIAVGDQFHESRHRPWRPVLQSIPEMD 97
           LGK D+K +SVQQVLAQLI VGDQFHESRHR WRPVLQSIPE+D
Sbjct: 61  LGKVDIKEMSVQQVLAQLIGVGDQFHESRHRHWRPVLQSIPEVD 104

[Close]

BLAST of MS008137 vs. NCBI nr
Match: XP_038896531.1 (uncharacterized protein LOC120084782 [Benincasa hispida])

HSP 1 Score: 135.6 bits (340), Expect = 2.3e-28
Identity = 71/110 (64.55%), Postives = 80/110 (72.73%), Query Frame = 0


Query: 1   MGNCLRRDGAAERWAGEEWGFLA--------------EEKQGSAAAPTAAATEVKIKITK 60
           MGNCLRRD A  +WAGE+W FLA              E+K+ SAA  +  A  VKIKITK
Sbjct: 1   MGNCLRRDDAVAQWAGEDWDFLAAEGHDGQEGLLRDGEKKKCSAAVASTTAATVKIKITK 60

Query: 61  KQLEELLGKADVKGLSVQQVLAQLIAVGDQFHESRHRPWRPVLQSIPEMD 97
           +QLEELLGK D+K +SVQQVLAQLI VGDQFHESRHR WRPVLQ IPE+D
Sbjct: 61  RQLEELLGKVDIKEISVQQVLAQLIGVGDQFHESRHRHWRPVLQCIPEVD 110

[Close]

BLAST of MS008137 vs. ExPASy TrEMBL
Match: A0A6J1CG88 (uncharacterized protein LOC111010526 OS=Momordica charantia OX=3673 GN=LOC111010526 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 7.7e-46
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1  MGNCLRRDGAAERWAGEEWGFLAEEKQGSAAAPTAAATEVKIKITKKQLEELLGKADVKG 60
          MGNCLRRDGAAERWAGEEWGFLAEEKQGSAAAPTAAATEVKIKITKKQLEELLGKADVKG
Sbjct: 1  MGNCLRRDGAAERWAGEEWGFLAEEKQGSAAAPTAAATEVKIKITKKQLEELLGKADVKG 60

Query: 61 LSVQQVLAQLIAVGDQFHESRHRPWRPVLQSIPEMD 97
          LSVQQVLAQLIAVGDQFHESRHRPWRPVLQSIPEMD
Sbjct: 61 LSVQQVLAQLIAVGDQFHESRHRPWRPVLQSIPEMD 96

[Close]

BLAST of MS008137 vs. ExPASy TrEMBL
Match: A0A6J1FD17 (uncharacterized protein LOC111442898 OS=Cucurbita moschata OX=3662 GN=LOC111442898 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.4e-31
Identity = 75/104 (72.12%), Postives = 81/104 (77.88%), Query Frame = 0


Query: 1   MGNCLRRDGAAERWAGEEWGFLAEEKQG--------SAAAPTAAATEVKIKITKKQLEEL 60
           MGNCLRRDGAA +WAGEEW FLA E  G             + AATEVKIKITK+QLEEL
Sbjct: 1   MGNCLRRDGAAAQWAGEEWDFLAAEDDGREGLLGEIEKKKSSTAATEVKIKITKRQLEEL 60

Query: 61  LGKADVKGLSVQQVLAQLIAVGDQFHESRHRPWRPVLQSIPEMD 97
           LGK D+K +SVQQVLAQLI VGDQFHESRHR WRPVLQSIPE+D
Sbjct: 61  LGKVDIKEMSVQQVLAQLIGVGDQFHESRHRHWRPVLQSIPEVD 104

[Close]

BLAST of MS008137 vs. ExPASy TrEMBL
Match: A0A6J1IHJ3 (uncharacterized protein LOC111475920 OS=Cucurbita maxima OX=3661 GN=LOC111475920 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 2.0e-30
Identity = 73/104 (70.19%), Postives = 79/104 (75.96%), Query Frame = 0


Query: 1   MGNCLRRDGAAERWAGEEWGFLAEEKQG--------SAAAPTAAATEVKIKITKKQLEEL 60
           MGNCLRRDGAA +WAGEEW  LA E  G             +  ATEVKIKITK+QLEEL
Sbjct: 1   MGNCLRRDGAAAQWAGEEWDLLAAEDDGREGLLGENEKKKSSTTATEVKIKITKRQLEEL 60

Query: 61  LGKADVKGLSVQQVLAQLIAVGDQFHESRHRPWRPVLQSIPEMD 97
           LGK D+K +SVQQVLAQLI VGDQFHESRHR WRPVLQSIPE+D
Sbjct: 61  LGKVDIKEMSVQQVLAQLIGVGDQFHESRHRHWRPVLQSIPEVD 104

[Close]

BLAST of MS008137 vs. ExPASy TrEMBL
Match: A0A067F5K7 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g033262mg PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 9.4e-20
Identity = 63/123 (51.22%), Postives = 79/123 (64.23%), Query Frame = 0


Query: 1   MGNCLR-RDGAAERWAGEEWGFLAE-------------------EKQGSAAAPTAAA--T 60
           MGNC+R +   + +WAG++WG + E                   +K G   +PT+AA  T
Sbjct: 1   MGNCIRHQHQPSMQWAGDDWGAVVESASNHRTEEAKQEGLLLGGDKVGFITSPTSAASST 60

Query: 61  EVKIKITKKQLEELLGKADVKGLSVQQVLAQLIAV-----GDQFHESRHRPWRPVLQSIP 97
           E+KIKITKKQLEELLGKADVKGLSVQQVLA LI V      D++HE+  R WRP LQSIP
Sbjct: 61  EIKIKITKKQLEELLGKADVKGLSVQQVLAHLINVNVSSSNDRYHETNQRSWRPALQSIP 120

[Close]

BLAST of MS008137 vs. ExPASy TrEMBL
Match: V4TY97 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10009680mg PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 9.4e-20
Identity = 63/123 (51.22%), Postives = 79/123 (64.23%), Query Frame = 0


Query: 1   MGNCLR-RDGAAERWAGEEWGFLAE-------------------EKQGSAAAPTAAA--T 60
           MGNC+R +   + +WAG++WG + E                   +K G   +PT+AA  T
Sbjct: 53  MGNCIRHQHQPSMQWAGDDWGAVVESASNHRTEEAKQEGLLLGGDKVGFITSPTSAASST 112

Query: 61  EVKIKITKKQLEELLGKADVKGLSVQQVLAQLIAV-----GDQFHESRHRPWRPVLQSIP 97
           E+KIKITKKQLEELLGKADVKGLSVQQVLA LI V      D++HE+  R WRP LQSIP
Sbjct: 113 EIKIKITKKQLEELLGKADVKGLSVQQVLAHLINVNVSSSNDRYHETNQRSWRPALQSIP 172

[Close]

BLAST of MS008137 vs. TAIR 10
Match: AT3G20340.1 (Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress. )

HSP 1 Score: 62.4 bits (150), Expect = 2.3e-10
Identity = 40/116 (34.48%), Postives = 64/116 (55.17%), Query Frame = 0


Query: 1   MGNCLRRDGAAERWAGEEWG-FLAEEKQG-----------------SAAAPTAAATEVKI 60
           MGNCLR + +   WAGE+W  F+ E+++                    +  +  + E+KI
Sbjct: 1   MGNCLRHE-SEMHWAGEDWDEFITEDEEDHHYSSKTTRDGKPVIVTRDSKSSVPSHEIKI 60

Query: 61  KITKKQLEELLGKADVKGLSVQQVLAQLIAVGDQFHE--SRHRPWRPVLQSIPEMD 97
           ++TKKQL +LL K +V  L+ QQ       + ++ +E  ++ R WRPVLQSIPE++
Sbjct: 61  RLTKKQLHDLLSKVNVHDLTFQQQTFSCPILNNRGYEEANQQRLWRPVLQSIPEVN 115

[Close]

BLAST of MS008137 vs. TAIR 10
Match: AT4G21920.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20340.1); Has 40 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 61.2 bits (147), Expect = 5.1e-10
Identity = 32/75 (42.67%), Postives = 52/75 (69.33%), Query Frame = 0


Query: 29  SAAAPTAAATEVKIKITKKQLEELLGKADVKGLSVQQVLAQLI-AVGDQFHES------R 88
           ++++ ++   E+KI+ITKK+LE+L+    +K L+ +++L++LI   GDQ   S       
Sbjct: 55  TSSSSSSERREIKIRITKKELEDLMRNIGLKSLTAEEILSKLIFEGGDQIGFSAVDVTNH 114

Query: 89  HRPWRPVLQSIPEMD 97
           H+PW+PVLQSIPEMD
Sbjct: 115 HQPWKPVLQSIPEMD 129

The following BLAST results are available for this feature:

BLAST of MS008137 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022139678.1	1.6e-45	100.00	uncharacterized protein LOC111010526 [Momordica charantia]	[more]
XP_022936225.1	2.9e-31	72.12	uncharacterized protein LOC111442898 [Cucurbita moschata] >KAG6592042.1 hypothet...	[more]
XP_023536165.1	3.2e-30	70.19	uncharacterized protein LOC111797410 [Cucurbita pepo subsp. pepo]	[more]
XP_022975730.1	4.2e-30	70.19	uncharacterized protein LOC111475920 [Cucurbita maxima]	[more]
XP_038896531.1	2.3e-28	64.55	uncharacterized protein LOC120084782 [Benincasa hispida]	[more]

BLAST of MS008137 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS008137 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CG88	7.7e-46	100.00	uncharacterized protein LOC111010526 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]
A0A6J1FD17	1.4e-31	72.12	uncharacterized protein LOC111442898 OS=Cucurbita moschata OX=3662 GN=LOC1114428...	[more]
A0A6J1IHJ3	2.0e-30	70.19	uncharacterized protein LOC111475920 OS=Cucurbita maxima OX=3661 GN=LOC111475920...	[more]
A0A067F5K7	9.4e-20	51.22	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g033262mg PE=4 SV=1	[more]
V4TY97	9.4e-20	51.22	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10009680mg PE=4 ...	[more]

BLAST of MS008137 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G20340.1	2.3e-10	34.48	Expression of the gene is downregulated in the presence of paraquat, an inducer ...	[more]
AT4G21920.1	5.1e-10	42.67	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33647:SF5	OS01G0793900 PROTEIN	coord: 1..95
None	No IPR available	PANTHER	PTHR33647	OS01G0793900 PROTEIN	coord: 1..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS008137.1	MS008137.1	mRNA