MS008102 (gene) Bitter gourd (TR) v1

Overview


Name	MS008102
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	V-type proton ATPase subunit e1
Location	scaffold703: 232804 .. 232902 (+)
RNA-Seq Expression	MS008102
Synteny	MS008102

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATTCTTGGTGACGACCCTGATTTTCGCCGTGATTGGAGTCATCGCATGTTTTTGCATCACAATTTGCTGTGGCAGAGGGGCTTCAACGAATTTG

mRNA sequence

ATGGGATTCTTGGTGACGACCCTGATTTTCGCCGTGATTGGAGTCATCGCATGTTTTTGCATCACAATTTGCTGTGGCAGAGGGGCTTCAACGAATTTG

Coding sequence (CDS)

ATGGGATTCTTGGTGACGACCCTGATTTTCGCCGTGATTGGAGTCATCGCATGTTTTTGCATCACAATTTGCTGTGGCAGAGGGGCTTCAACGAATTTG

Protein sequence

MGFLVTTLIFAVIGVIACFCITICCGRGASTNL

Homology

[Close]

BLAST of MS008102 vs. NCBI nr
Match: XP_022139466.1 (V-type proton ATPase subunit e1 [Momordica charantia])

HSP 1 Score: 62.4 bits (150), Expect = 8.5e-07
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = 0


Query: 1  MGFLVTTLIFAVIGVIACFCITICCGRGASTNL 34
          MGFLVTTLIFAVIGVIACFCITICC RGASTNL
Sbjct: 1  MGFLVTTLIFAVIGVIACFCITICCRRGASTNL 33

[Close]

BLAST of MS008102 vs. NCBI nr
Match: XP_008447705.1 (PREDICTED: V-type proton ATPase subunit e1 [Cucumis melo])

HSP 1 Score: 57.4 bits (137), Expect = 2.7e-05
Identity = 29/33 (87.88%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 1  MGFLVTTLIFAVIGVIACFCITICCGRGASTNL 34
          MGFLVT+LIFAVIGVIACFC  ICC RGASTNL
Sbjct: 1  MGFLVTSLIFAVIGVIACFCTLICCNRGASTNL 33

[Close]

BLAST of MS008102 vs. NCBI nr
Match: XP_022936276.1 (V-type proton ATPase subunit e1-like [Cucurbita moschata] >XP_022936277.1 V-type proton ATPase subunit e1-like [Cucurbita moschata] >XP_022939986.1 V-type proton ATPase subunit e1-like [Cucurbita moschata] >XP_022976371.1 V-type proton ATPase subunit e1-like [Cucurbita maxima] >XP_022976372.1 V-type proton ATPase subunit e1-like [Cucurbita maxima] >XP_022981665.1 V-type proton ATPase subunit e1-like [Cucurbita maxima] >XP_023522251.1 V-type proton ATPase subunit e1-like [Cucurbita pepo subsp. pepo] >XP_023535354.1 V-type proton ATPase subunit e1-like [Cucurbita pepo subsp. pepo] >XP_023535355.1 V-type proton ATPase subunit e1-like [Cucurbita pepo subsp. pepo] >KAG6592066.1 V-type proton ATPase subunit e1, partial [Cucurbita argyrosperma subsp. sororia] >KAG6607779.1 V-type proton ATPase subunit e1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 57.0 bits (136), Expect = 3.6e-05
Identity = 29/33 (87.88%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 1  MGFLVTTLIFAVIGVIACFCITICCGRGASTNL 34
          MGFLVT+LIFAVIGVIACFC  ICC RGASTNL
Sbjct: 1  MGFLVTSLIFAVIGVIACFCSLICCNRGASTNL 33

[Close]

BLAST of MS008102 vs. NCBI nr
Match: XP_038899943.1 (V-type proton ATPase subunit e1-like [Benincasa hispida] >XP_038899944.1 V-type proton ATPase subunit e1-like [Benincasa hispida])

HSP 1 Score: 55.8 bits (133), Expect = 8.0e-05
Identity = 28/33 (84.85%), Postives = 29/33 (87.88%), Query Frame = 0


Query: 1  MGFLVTTLIFAVIGVIACFCITICCGRGASTNL 34
          MGFLVT+LIFAVIGVI CFC  ICC RGASTNL
Sbjct: 1  MGFLVTSLIFAVIGVIGCFCTLICCNRGASTNL 33

[Close]

BLAST of MS008102 vs. NCBI nr
Match: XP_004151389.1 (V-type proton ATPase subunit e1 [Cucumis sativus] >XP_031744853.1 V-type proton ATPase subunit e1 [Cucumis sativus])

HSP 1 Score: 55.8 bits (133), Expect = 8.0e-05
Identity = 28/33 (84.85%), Postives = 29/33 (87.88%), Query Frame = 0


Query: 1  MGFLVTTLIFAVIGVIACFCITICCGRGASTNL 34
          MGFLVT+LIFAVIGVI CFC  ICC RGASTNL
Sbjct: 1  MGFLVTSLIFAVIGVITCFCTLICCNRGASTNL 33

[Close]

BLAST of MS008102 vs. ExPASy Swiss-Prot
Match: Q9FLN5 (V-type proton ATPase subunit e1 OS=Arabidopsis thaliana OX=3702 GN=VHA-e1 PE=3 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 7.5e-06
Identity = 23/33 (69.70%), Postives = 27/33 (81.82%), Query Frame = 0


Query: 1  MGFLVTTLIFAVIGVIACFCITICCGRGASTNL 34
          MGFL+TTLIF V+G+IA  C+ ICC RG STNL
Sbjct: 1  MGFLITTLIFVVVGIIASLCVRICCNRGPSTNL 33

[Close]

BLAST of MS008102 vs. ExPASy TrEMBL
Match: A0A6J1CCR8 (V-type proton ATPase subunit e1 OS=Momordica charantia OX=3673 GN=LOC111010390 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.1e-07
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = 0


Query: 1  MGFLVTTLIFAVIGVIACFCITICCGRGASTNL 34
          MGFLVTTLIFAVIGVIACFCITICC RGASTNL
Sbjct: 1  MGFLVTTLIFAVIGVIACFCITICCRRGASTNL 33

[Close]

BLAST of MS008102 vs. ExPASy TrEMBL
Match: A0A1S3BIY2 (V-type proton ATPase subunit e1 OS=Cucumis melo OX=3656 GN=LOC103490117 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.3e-05
Identity = 29/33 (87.88%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 1  MGFLVTTLIFAVIGVIACFCITICCGRGASTNL 34
          MGFLVT+LIFAVIGVIACFC  ICC RGASTNL
Sbjct: 1  MGFLVTSLIFAVIGVIACFCTLICCNRGASTNL 33

[Close]

BLAST of MS008102 vs. ExPASy TrEMBL
Match: A0A6J1IFJ9 (V-type proton ATPase subunit e1-like OS=Cucurbita maxima OX=3661 GN=LOC111476795 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.7e-05
Identity = 29/33 (87.88%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 1  MGFLVTTLIFAVIGVIACFCITICCGRGASTNL 34
          MGFLVT+LIFAVIGVIACFC  ICC RGASTNL
Sbjct: 1  MGFLVTSLIFAVIGVIACFCSLICCNRGASTNL 33

[Close]

BLAST of MS008102 vs. ExPASy TrEMBL
Match: A0A6J1F721 (V-type proton ATPase subunit e1-like OS=Cucurbita moschata OX=3662 GN=LOC111442944 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.7e-05
Identity = 29/33 (87.88%), Postives = 30/33 (90.91%), Query Frame = 0


Query: 1  MGFLVTTLIFAVIGVIACFCITICCGRGASTNL 34
          MGFLVT+LIFAVIGVIACFC  ICC RGASTNL
Sbjct: 1  MGFLVTSLIFAVIGVIACFCSLICCNRGASTNL 33

[Close]

BLAST of MS008102 vs. ExPASy TrEMBL
Match: A0A0A0K8A5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G085210 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.9e-05
Identity = 28/33 (84.85%), Postives = 29/33 (87.88%), Query Frame = 0


Query: 1  MGFLVTTLIFAVIGVIACFCITICCGRGASTNL 34
          MGFLVT+LIFAVIGVI CFC  ICC RGASTNL
Sbjct: 1  MGFLVTSLIFAVIGVITCFCTLICCNRGASTNL 33

[Close]

BLAST of MS008102 vs. TAIR 10
Match: AT5G55290.1 (ATPase, V0 complex, subunit E )

HSP 1 Score: 49.7 bits (117), Expect = 5.3e-07
Identity = 23/33 (69.70%), Postives = 27/33 (81.82%), Query Frame = 0


Query: 1  MGFLVTTLIFAVIGVIACFCITICCGRGASTNL 34
          MGFL+TTLIF V+G+IA  C+ ICC RG STNL
Sbjct: 1  MGFLITTLIFVVVGIIASLCVRICCNRGPSTNL 33

[Close]

BLAST of MS008102 vs. TAIR 10
Match: AT5G55290.2 (ATPase, V0 complex, subunit E )

HSP 1 Score: 49.7 bits (117), Expect = 5.3e-07
Identity = 23/33 (69.70%), Postives = 27/33 (81.82%), Query Frame = 0


Query: 1  MGFLVTTLIFAVIGVIACFCITICCGRGASTNL 34
          MGFL+TTLIF V+G+IA  C+ ICC RG STNL
Sbjct: 1  MGFLITTLIFVVVGIIASLCVRICCNRGPSTNL 33

[Close]

BLAST of MS008102 vs. TAIR 10
Match: AT4G26710.1 (ATPase, V0 complex, subunit E )

HSP 1 Score: 39.7 bits (91), Expect = 5.5e-04
Identity = 20/33 (60.61%), Postives = 25/33 (75.76%), Query Frame = 0


Query: 1  MGFLVTTLIFAVIGVIACFCITICCGRGASTNL 34
          M F+VT+LIFAV+G+IA  C  IC  +G STNL
Sbjct: 1  MAFVVTSLIFAVVGIIASICTRICFNKGPSTNL 33

[Close]

BLAST of MS008102 vs. TAIR 10
Match: AT4G26710.2 (ATPase, V0 complex, subunit E )

HSP 1 Score: 39.7 bits (91), Expect = 5.5e-04
Identity = 20/33 (60.61%), Postives = 25/33 (75.76%), Query Frame = 0


Query: 1  MGFLVTTLIFAVIGVIACFCITICCGRGASTNL 34
          M F+VT+LIFAV+G+IA  C  IC  +G STNL
Sbjct: 1  MAFVVTSLIFAVVGIIASICTRICFNKGPSTNL 33

The following BLAST results are available for this feature:

BLAST of MS008102 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022139466.1	8.5e-07	96.97	V-type proton ATPase subunit e1 [Momordica charantia]	[more]
XP_008447705.1	2.7e-05	87.88	PREDICTED: V-type proton ATPase subunit e1 [Cucumis melo]	[more]
XP_022936276.1	3.6e-05	87.88	V-type proton ATPase subunit e1-like [Cucurbita moschata] >XP_022936277.1 V-type...	[more]
XP_038899943.1	8.0e-05	84.85	V-type proton ATPase subunit e1-like [Benincasa hispida] >XP_038899944.1 V-type ...	[more]
XP_004151389.1	8.0e-05	84.85	V-type proton ATPase subunit e1 [Cucumis sativus] >XP_031744853.1 V-type proton ...	[more]

BLAST of MS008102 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FLN5	7.5e-06	69.70	V-type proton ATPase subunit e1 OS=Arabidopsis thaliana OX=3702 GN=VHA-e1 PE=3 S...	[more]

BLAST of MS008102 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CCR8	4.1e-07	96.97	V-type proton ATPase subunit e1 OS=Momordica charantia OX=3673 GN=LOC111010390 P...	[more]
A0A1S3BIY2	1.3e-05	87.88	V-type proton ATPase subunit e1 OS=Cucumis melo OX=3656 GN=LOC103490117 PE=3 SV=...	[more]
A0A6J1IFJ9	1.7e-05	87.88	V-type proton ATPase subunit e1-like OS=Cucurbita maxima OX=3661 GN=LOC111476795...	[more]
A0A6J1F721	1.7e-05	87.88	V-type proton ATPase subunit e1-like OS=Cucurbita moschata OX=3662 GN=LOC1114429...	[more]
A0A0A0K8A5	3.9e-05	84.85	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G085210 PE=3 SV=1	[more]

BLAST of MS008102 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G55290.1	5.3e-07	69.70	ATPase, V0 complex, subunit E	[more]
AT5G55290.2	5.3e-07	69.70	ATPase, V0 complex, subunit E	[more]
AT4G26710.1	5.5e-04	60.61	ATPase, V0 complex, subunit E	[more]
AT4G26710.2	5.5e-04	60.61	ATPase, V0 complex, subunit E	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS008102.1	MS008102.1	mRNA