MS004219 (gene) Bitter gourd (TR) v1

Overview
NameMS004219
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionDNL-type domain-containing protein
Locationscaffold92: 904180 .. 904683 (-)
RNA-Seq ExpressionMS004219
SyntenyMS004219
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGTGTGCACTTGCCAAATCCACCCTTTTGCAAATTCACGCTTCTTGACCGGACACAGATTTTTGAGAAGAGGAAATCAGACCATCGCAAATCCAGCAGTTGCTGAGGATTCTAAAGACAATGAAGATAATAAGCTGCAGCCCGTTTCTGACTCAATCGATCCCCTTGATCAGGAAAAGAACAATGATAGTGCTGCTGTGAAGTATTCTGTTCTCTCCAACTTAAAAATGTCCCCTAGGCATGACCTTGCCATGATATTCACTTGCAAAGTGTGTGAGACTAGATCAATCAAGACAGTTTGCCGCTCATCATACGAGAAGGGCGTGGTAGTGGCCCGTTGCGGTGGATGCAACAACCTACACCTGATTGCAGACCATCTGGGGTGGTTTGGCGAGCCTGGCAGCATCGAAGACTTCCTGGCTGCTCGTGGTGAGGAAGTCCGAAAAGGTTCTGTTGATTCACTGAGTCTTACACTTGATGATTTGGCTGGAAAGAAATCC

mRNA sequence

ATGGCAGTGTGCACTTGCCAAATCCACCCTTTTGCAAATTCACGCTTCTTGACCGGACACAGATTTTTGAGAAGAGGAAATCAGACCATCGCAAATCCAGCAGTTGCTGAGGATTCTAAAGACAATGAAGATAATAAGCTGCAGCCCGTTTCTGACTCAATCGATCCCCTTGATCAGGAAAAGAACAATGATAGTGCTGCTGTGAAGTATTCTGTTCTCTCCAACTTAAAAATGTCCCCTAGGCATGACCTTGCCATGATATTCACTTGCAAAGTGTGTGAGACTAGATCAATCAAGACAGTTTGCCGCTCATCATACGAGAAGGGCGTGGTAGTGGCCCGTTGCGGTGGATGCAACAACCTACACCTGATTGCAGACCATCTGGGGTGGTTTGGCGAGCCTGGCAGCATCGAAGACTTCCTGGCTGCTCGTGGTGAGGAAGTCCGAAAAGGTTCTGTTGATTCACTGAGTCTTACACTTGATGATTTGGCTGGAAAGAAATCC

Coding sequence (CDS)

ATGGCAGTGTGCACTTGCCAAATCCACCCTTTTGCAAATTCACGCTTCTTGACCGGACACAGATTTTTGAGAAGAGGAAATCAGACCATCGCAAATCCAGCAGTTGCTGAGGATTCTAAAGACAATGAAGATAATAAGCTGCAGCCCGTTTCTGACTCAATCGATCCCCTTGATCAGGAAAAGAACAATGATAGTGCTGCTGTGAAGTATTCTGTTCTCTCCAACTTAAAAATGTCCCCTAGGCATGACCTTGCCATGATATTCACTTGCAAAGTGTGTGAGACTAGATCAATCAAGACAGTTTGCCGCTCATCATACGAGAAGGGCGTGGTAGTGGCCCGTTGCGGTGGATGCAACAACCTACACCTGATTGCAGACCATCTGGGGTGGTTTGGCGAGCCTGGCAGCATCGAAGACTTCCTGGCTGCTCGTGGTGAGGAAGTCCGAAAAGGTTCTGTTGATTCACTGAGTCTTACACTTGATGATTTGGCTGGAAAGAAATCC

Protein sequence

MAVCTCQIHPFANSRFLTGHRFLRRGNQTIANPAVAEDSKDNEDNKLQPVSDSIDPLDQEKNNDSAAVKYSVLSNLKMSPRHDLAMIFTCKVCETRSIKTVCRSSYEKGVVVARCGGCNNLHLIADHLGWFGEPGSIEDFLAARGEEVRKGSVDSLSLTLDDLAGKKS
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022138898.11.3e-8798.79uncharacterized protein LOC111009963 [Momordica charantia][more]
XP_038891386.11.3e-7485.12DNL-type zinc finger protein isoform X2 [Benincasa hispida][more]
XP_038891384.16.3e-7485.98DNL-type zinc finger protein isoform X1 [Benincasa hispida][more]
XP_004142433.21.6e-6982.32uncharacterized protein LOC101207740 [Cucumis sativus] >KGN52257.1 hypothetical ... [more]
KAA0034710.15.7e-6780.75DNL-type zinc finger protein [Cucumis melo var. makuwa] >TYK09263.1 DNL-type zin... [more]
Match NameE-valueIdentityDescription
Q0IH402.8e-1650.00DNL-type zinc finger protein OS=Xenopus laevis OX=8355 GN=dnlz PE=2 SV=1[more]
Q9D1139.0e-1550.00DNL-type zinc finger protein OS=Mus musculus OX=10090 GN=Dnlz PE=1 SV=1[more]
A1L1P77.7e-1450.00DNL-type zinc finger protein OS=Danio rerio OX=7955 GN=dnlz PE=2 SV=1[more]
Q5SXM81.7e-1346.25DNL-type zinc finger protein OS=Homo sapiens OX=9606 GN=DNLZ PE=1 SV=1[more]
Q097596.7e-1040.00Uncharacterized protein C24H6.02c OS=Schizosaccharomyces pombe (strain 972 / ATC... [more]
Match NameE-valueIdentityDescription
A0A6J1CEE46.4e-8898.79uncharacterized protein LOC111009963 OS=Momordica charantia OX=3673 GN=LOC111009... [more]
A0A0A0KUY37.8e-7082.32DNL-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G622720 PE... [more]
A0A1S4DW082.8e-6780.75DNL-type zinc finger protein OS=Cucumis melo OX=3656 GN=LOC103489455 PE=4 SV=1[more]
A0A5D3CBP42.8e-6780.75DNL-type zinc finger protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
A0A6J1GYW75.8e-6577.44uncharacterized protein C24H6.02c OS=Cucurbita moschata OX=3662 GN=LOC111458755 ... [more]
Match NameE-valueIdentityDescription
AT3G54826.14.3e-3651.59Zim17-type zinc finger protein [more]
AT1G68730.12.4e-0736.78Zim17-type zinc finger protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007853Zinc finger, DNL-typePFAMPF05180zf-DNLcoord: 86..146
e-value: 2.9E-25
score: 88.0
IPR007853Zinc finger, DNL-typePROSITEPS51501ZF_DNLcoord: 79..168
score: 17.584902
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 33..60
NoneNo IPR availablePANTHERPTHR20922:SF13DNL-TYPE ZINC FINGER PROTEINcoord: 20..167
IPR024158Mitochondrial import protein TIM15PANTHERPTHR20922UNCHARACTERIZEDcoord: 20..167

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS004219.1MS004219.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008270 zinc ion binding