MS004192 (gene) Bitter gourd (TR) v1

Overview
NameMS004192
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionNAC domain-containing protein
Locationscaffold92: 709767 .. 713329 (-)
RNA-Seq ExpressionMS004192
SyntenyMS004192
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGACGAGATTCTGCTACCTCGCTGGCACCGGGGTTCCGATTCCACCCGACAGATGAAGAGCTCGTCAGTTACTATCTGAAGCGCAAAGTTTGTGGAAAACCCTTTCGTTTTGACCCAATTTCCGTCATAGACATCTACAAAGCCGAACCCTGGGATCTCCCTGGTCAAACCCCACTTCTATTCTTGTGATTTGTGTTTGATTTTGTTCTTAATTTTACTTCTCCTGCTTCCCTACGCGTAGAATTGAACTTGTGTTGTGGGATTTGTCAGGGAAGTCGAAGCTGAAGAGCAGAGATTTGGAGTGGTACTTCTTCAGTGCTTTGGATAAGAAATATGGCAATAGTTCGAGGACCAATAGGGCTACGGAGAAAGGGTACTGGAAGACGACGGGGAAGGACCGGCCGGTCCGCCATAACATGAGGACTGTTGGAATGAAGAAGACTCTCGTGTATCATATTGGGCGGGCACCGCGTGGTGCTCGCACCAATTGGGTGATGCACGAGTACAAACTCACTGACGAGGAAATGGGAAAAATTGCAATTATGCAGGTTGGATTAGGGCGAAAGTTTTAGCTCTCTCCCTCTCTCTGTCTCTGATTTATGATCTTACTTATTATTTGGAAAATGTCGTTGTAATTGTTTTGGGATCTGTTGGTTGCTTTGTTGGGTTGGAAGGATGCATTTGTGCTATGTAGGATATTCCAGAAGAGTGGTTCCGGACCAAAAAATGGAGAACAGTATGGTGCCCCTTTTATTGAGGAGGAATGGGAAGAAAATGAAGAGCTGGCTCTGGTACCTGGGGCTCTGATGCCTGATGGTGATGATCAAGTGGCTGATGAGTTGATTGTTGGTGGAGGCGTTTATGTTGATGGCGATGACTTCAGTGAGGTATGTACTTTACCATGTTGTAACTTGCAAGTAAATTGCCTCTTCAGGTGAAATGCTTTTACAGTAAATCAGAAGTGTCTGGTGTGGTGTTTCTGAAATATGATATAAAAGGTGTTGAAGCAAGGGGATTATGGGCAGATCTGTCTGAGAGCTGCCTAAGATTCGAAAGAAACTTGAATATTATGATAGTCAAGCAATTTGTGTTGTCCTTAGTGTATTCTTTCCTTTCTTCTAAAAGTTGGTTTTTTCATAAAATATGATATTTAAGCAATTGGTTGAGGAAGTTAAATATATGCTAAGTGTTGAGTGAATAGAGTATGGTCAAGGATGAATTATGAAACACGATCATTGAACAATTCATTAAGACTAGAAAATACCCCAAAACCAGAGAAGAATAGGGGATAAACTTCTACAATCTCTACAGGTCAAAGCAAAACACCATTTTTCTGACCAAGGAAGACACTACCTAAACCCAGAGTTGAAAGTTGAAACCAGTTGCACGTTGATTTAGGATTGAAATTGGCGAGCATTTGGCTCACAAGTTGAGTTTGCATAGTCTAGCCCGTTATGTGATTGCAGTTTTGCACAAAATAGGTGCATTTGATGTCTTAGTATAGTAAAAGCTATTAGAAGGAAGAAAGTAGTCAGAAACTAGACGGATTTGTGGGGATTGATAAGTGGAGAGTCTAATTATAGGGCATATAGATGGGACAAAGTAAAGATAGTGGGCCAGTGGGTGAAATAGTGAGATTCCAAGTTAAAGGCTTTCATAAAAGTTCTCAAATAGAATCGAGAATGAACTGATGTATTTAAACAATTCTATAGAAGCATGATAAAATTGAGATGGACCATGAATGTATTAAACGTGGCAGCTGTTCTTTTGGAATTTACCTGGTTTGGAACTTTCTAATAAAAGCATATCTTAGGAAATATATTTTCTTATTAACCATCATAGAATGGCTCAAGTGGTCAATGAGAGCCAATGTAAATAGCAAAGGACTTAGAGAGAATGAGTTCAAACCATGGTGGCCGCCTACCTAGGATTTAATATCCTACGAGTTTCCTTGTCAACCAAATGTAGTAGGGTCAGACGGTTGACCCCTAAATAGTCGAGGTGTGCACAAGCTGGTCCGGACACACGAATATAAAAAAAATATATATATATATATATATATTTTTTCTTATTTAAGAAGAATGATAAGTATTTCAATGTAGTATTTGACATTGTTGTTGCCAAATTATGCTATACAATACAAGTTTACTTCATCATCAAAACTGGTAAATAAAGAGAAATATTGTACGATGCGGACCCCATTACTCAATGTTCCTCGAGTATTTGTCCACCCTTATGTTTATTGGAGTGGGTTGTTGGTTGTTTCCTGTTTGATAAATTTTGTTGACTTTTTAATCAGTTCGTGAGCAATATCAAGATCTTGTTAAATTCTTTCTCCAGAATATTGATGAAGGGATTCCATCTGAAAGTGCTCCACCACCTCCATTTAACTTCTATTATGGTGAGACTAGCAACTCTAATGAGCAATCTGACAATATCATTGAAGATGATCAGAAGCCTGTAGTAGGCATATGTGAGACATCAGAGCTTCCTGATGGACAGAAGCTCTTTGTTTTACCAGATGAGTGTGGGTTACATGAGAGATTGGTCAAACATGAGTATCTTGCTGAGCCAAGTAATGATGCCGATGCTAACGTTGCAGATGATGTCGTTGATGCTGGTGATGTGGATGTTCATTACTTGCTGAACGACGAATTCTTTAGTACTTCTGATAATCTTTCTTTTAGTGATGAACTACTTTTGGAATCCAATGAACTCTCAAACCCTACTGAAAGTGATCCTGCTGCTTTTGATGTGCTTGAAGAATATCTTACATTCTTCGACGCAGATGGTGATAACACAGATATGTCTTTTGATCCTTCTGAAATTCTCGGAACTGAGAGTCCTGTTCCTGATCAAGCAGTTCTTTCAGAGGTCAAGATTTCTCCATCTCACAACTTATTTTATTGTCTTGTGATTTTGAATTTTTAACTGATGGATGCATCATATTTCATTAGGTTGCGGTTGGTGCTACTGAACATGTATCTGCCAGCAAACATACTGCCGATTTACGTTATGACAACGAGGCCTCCTCCTCCTCTTCAGTGCAAAGACCCGAGGACCAGAAAGCAGAGCCAGGTATGCTAAACTTTCCATTCAGATATTTGCAAGGTTCTTGGTTCACTCTTTTTAAACATATTTCTCTTTTGGTACCAGATATCAAGTACCCATTCATCAAACATACAAGTCATATGCTGGGAAGCATTCCTACTCCATTTGCTTCACAGTTTACTTCAAAAGATGCCGCTATCCGGCTCAACTCAGCTCCACAAGCTTCGAGTTCTGTTCGCGTCACTGCTGGCATGATTGTCATAAGAAACACGACATTAAGTGGAGACGAAGTGAACAACTTGTACAGCAAGAACACAGATCTCAACTTCATCTATTTGTTTGGGATCACCGAATGCGACACCGAGACCTCCCCATTGTTGCCAACTCCTGGTGTACATTCGAGCAAGTCGGAACCCCTGATGTCGCGCTACTTCTTGCACTTCTTCATCTTGTTCTGGGTTCTAATCCTTTCGGTGAGTTTCAAAGTTGTAAGCTGCATTCATTCCAGG

mRNA sequence

ATGGGACGAGATTCTGCTACCTCGCTGGCACCGGGGTTCCGATTCCACCCGACAGATGAAGAGCTCGTCAGTTACTATCTGAAGCGCAAAGTTTGTGGAAAACCCTTTCGTTTTGACCCAATTTCCGTCATAGACATCTACAAAGCCGAACCCTGGGATCTCCCTGGGAAGTCGAAGCTGAAGAGCAGAGATTTGGAGTGGTACTTCTTCAGTGCTTTGGATAAGAAATATGGCAATAGTTCGAGGACCAATAGGGCTACGGAGAAAGGGTACTGGAAGACGACGGGGAAGGACCGGCCGGTCCGCCATAACATGAGGACTGTTGGAATGAAGAAGACTCTCGTGTATCATATTGGGCGGGCACCGCGTGGTGCTCGCACCAATTGGGTGATGCACGAGTACAAACTCACTGACGAGGAAATGGGAAAAATTGCAATTATGCAGGATGCATTTGTGCTATGTAGGATATTCCAGAAGAGTGGTTCCGGACCAAAAAATGGAGAACAGTATGGTGCCCCTTTTATTGAGGAGGAATGGGAAGAAAATGAAGAGCTGGCTCTGGTACCTGGGGCTCTGATGCCTGATGGTGATGATCAAGTGGCTGATGAGTTGATTGTTGGTGGAGGCGTTTATGTTGATGGCGATGACTTCAGTGAGAATATTGATGAAGGGATTCCATCTGAAAGTGCTCCACCACCTCCATTTAACTTCTATTATGGTGAGACTAGCAACTCTAATGAGCAATCTGACAATATCATTGAAGATGATCAGAAGCCTGTAGTAGGCATATGTGAGACATCAGAGCTTCCTGATGGACAGAAGCTCTTTGTTTTACCAGATGAGTGTGGGTTACATGAGAGATTGGTCAAACATGAGTATCTTGCTGAGCCAAGTAATGATGCCGATGCTAACGTTGCAGATGATGTCGTTGATGCTGGTGATGTGGATGTTCATTACTTGCTGAACGACGAATTCTTTAGTACTTCTGATAATCTTTCTTTTAGTGATGAACTACTTTTGGAATCCAATGAACTCTCAAACCCTACTGAAAGTGATCCTGCTGCTTTTGATGTGCTTGAAGAATATCTTACATTCTTCGACGCAGATGGTGATAACACAGATATGTCTTTTGATCCTTCTGAAATTCTCGGAACTGAGAGTCCTGTTCCTGATCAAGCAGTTCTTTCAGAGGTTGCGGTTGGTGCTACTGAACATGTATCTGCCAGCAAACATACTGCCGATTTACGTTATGACAACGAGGCCTCCTCCTCCTCTTCAGTGCAAAGACCCGAGGACCAGAAAGCAGAGCCAGGTATGCTAAACTTTCCATTCAGATATTTGCAAGGTTCTTGGTTCACTCTTTTTAAACATATTTCTCTTTTGGTACCAGATATCAAGTACCCATTCATCAAACATACAAGTCATATGCTGGGAAGCATTCCTACTCCATTTGCTTCACAGTTTACTTCAAAAGATGCCGCTATCCGGCTCAACTCAGCTCCACAAGCTTCGAGTTCTGTTCGCGTCACTGCTGGCATGATTGTCATAAGAAACACGACATTAAGTGGAGACGAAGTGAACAACTTGTACAGCAAGAACACAGATCTCAACTTCATCTATTTGTTTGGGATCACCGAATGCGACACCGAGACCTCCCCATTGTTGCCAACTCCTGGTGTACATTCGAGCAAGTCGGAACCCCTGATGTCGCGCTACTTCTTGCACTTCTTCATCTTGTTCTGGGTTCTAATCCTTTCGGTGAGTTTCAAAGTTGTAAGCTGCATTCATTCCAGG

Coding sequence (CDS)

ATGGGACGAGATTCTGCTACCTCGCTGGCACCGGGGTTCCGATTCCACCCGACAGATGAAGAGCTCGTCAGTTACTATCTGAAGCGCAAAGTTTGTGGAAAACCCTTTCGTTTTGACCCAATTTCCGTCATAGACATCTACAAAGCCGAACCCTGGGATCTCCCTGGGAAGTCGAAGCTGAAGAGCAGAGATTTGGAGTGGTACTTCTTCAGTGCTTTGGATAAGAAATATGGCAATAGTTCGAGGACCAATAGGGCTACGGAGAAAGGGTACTGGAAGACGACGGGGAAGGACCGGCCGGTCCGCCATAACATGAGGACTGTTGGAATGAAGAAGACTCTCGTGTATCATATTGGGCGGGCACCGCGTGGTGCTCGCACCAATTGGGTGATGCACGAGTACAAACTCACTGACGAGGAAATGGGAAAAATTGCAATTATGCAGGATGCATTTGTGCTATGTAGGATATTCCAGAAGAGTGGTTCCGGACCAAAAAATGGAGAACAGTATGGTGCCCCTTTTATTGAGGAGGAATGGGAAGAAAATGAAGAGCTGGCTCTGGTACCTGGGGCTCTGATGCCTGATGGTGATGATCAAGTGGCTGATGAGTTGATTGTTGGTGGAGGCGTTTATGTTGATGGCGATGACTTCAGTGAGAATATTGATGAAGGGATTCCATCTGAAAGTGCTCCACCACCTCCATTTAACTTCTATTATGGTGAGACTAGCAACTCTAATGAGCAATCTGACAATATCATTGAAGATGATCAGAAGCCTGTAGTAGGCATATGTGAGACATCAGAGCTTCCTGATGGACAGAAGCTCTTTGTTTTACCAGATGAGTGTGGGTTACATGAGAGATTGGTCAAACATGAGTATCTTGCTGAGCCAAGTAATGATGCCGATGCTAACGTTGCAGATGATGTCGTTGATGCTGGTGATGTGGATGTTCATTACTTGCTGAACGACGAATTCTTTAGTACTTCTGATAATCTTTCTTTTAGTGATGAACTACTTTTGGAATCCAATGAACTCTCAAACCCTACTGAAAGTGATCCTGCTGCTTTTGATGTGCTTGAAGAATATCTTACATTCTTCGACGCAGATGGTGATAACACAGATATGTCTTTTGATCCTTCTGAAATTCTCGGAACTGAGAGTCCTGTTCCTGATCAAGCAGTTCTTTCAGAGGTTGCGGTTGGTGCTACTGAACATGTATCTGCCAGCAAACATACTGCCGATTTACGTTATGACAACGAGGCCTCCTCCTCCTCTTCAGTGCAAAGACCCGAGGACCAGAAAGCAGAGCCAGGTATGCTAAACTTTCCATTCAGATATTTGCAAGGTTCTTGGTTCACTCTTTTTAAACATATTTCTCTTTTGGTACCAGATATCAAGTACCCATTCATCAAACATACAAGTCATATGCTGGGAAGCATTCCTACTCCATTTGCTTCACAGTTTACTTCAAAAGATGCCGCTATCCGGCTCAACTCAGCTCCACAAGCTTCGAGTTCTGTTCGCGTCACTGCTGGCATGATTGTCATAAGAAACACGACATTAAGTGGAGACGAAGTGAACAACTTGTACAGCAAGAACACAGATCTCAACTTCATCTATTTGTTTGGGATCACCGAATGCGACACCGAGACCTCCCCATTGTTGCCAACTCCTGGTGTACATTCGAGCAAGTCGGAACCCCTGATGTCGCGCTACTTCTTGCACTTCTTCATCTTGTTCTGGGTTCTAATCCTTTCGGTGAGTTTCAAAGTTGTAAGCTGCATTCATTCCAGG

Protein sequence

MGRDSATSLAPGFRFHPTDEELVSYYLKRKVCGKPFRFDPISVIDIYKAEPWDLPGKSKLKSRDLEWYFFSALDKKYGNSSRTNRATEKGYWKTTGKDRPVRHNMRTVGMKKTLVYHIGRAPRGARTNWVMHEYKLTDEEMGKIAIMQDAFVLCRIFQKSGSGPKNGEQYGAPFIEEEWEENEELALVPGALMPDGDDQVADELIVGGGVYVDGDDFSENIDEGIPSESAPPPPFNFYYGETSNSNEQSDNIIEDDQKPVVGICETSELPDGQKLFVLPDECGLHERLVKHEYLAEPSNDADANVADDVVDAGDVDVHYLLNDEFFSTSDNLSFSDELLLESNELSNPTESDPAAFDVLEEYLTFFDADGDNTDMSFDPSEILGTESPVPDQAVLSEVAVGATEHVSASKHTADLRYDNEASSSSSVQRPEDQKAEPGMLNFPFRYLQGSWFTLFKHISLLVPDIKYPFIKHTSHMLGSIPTPFASQFTSKDAAIRLNSAPQASSSVRVTAGMIVIRNTTLSGDEVNNLYSKNTDLNFIYLFGITECDTETSPLLPTPGVHSSKSEPLMSRYFLHFFILFWVLILSVSFKVVSCIHSR
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022139087.10.0e+0095.32NAC domain-containing protein 53-like [Momordica charantia][more]
XP_038891998.13.5e-27682.61NAC domain-containing protein 53-like [Benincasa hispida][more]
XP_023542047.12.4e-27280.83NAC domain-containing protein 53-like [Cucurbita pepo subsp. pepo][more]
XP_008446811.12.9e-27080.43PREDICTED: NAC domain-containing protein 53-like [Cucumis melo] >KAA0034687.1 NA... [more]
KAG6601191.13.8e-27080.10NAC domain-containing protein 78, partial [Cucurbita argyrosperma subsp. sororia... [more]
Match NameE-valueIdentityDescription
Q84K007.7e-12544.85NAC domain-containing protein 78 OS=Arabidopsis thaliana OX=3702 GN=NAC078 PE=2 ... [more]
Q949N02.7e-12244.92NAC domain-containing protein 53 OS=Arabidopsis thaliana OX=3702 GN=NAC053 PE=2 ... [more]
Q9SQX91.2e-6949.37NAC domain containing protein 50 OS=Arabidopsis thaliana OX=3702 GN=NAC050 PE=1 ... [more]
Q9SQY06.0e-6947.15NAC domain containing protein 52 OS=Arabidopsis thaliana OX=3702 GN=NAC052 PE=1 ... [more]
Q9XIC53.5e-6149.57NAC domain-containing protein 17 OS=Arabidopsis thaliana OX=3702 GN=NAC017 PE=2 ... [more]
Match NameE-valueIdentityDescription
A0A6J1CD110.0e+0095.32NAC domain-containing protein 53-like OS=Momordica charantia OX=3673 GN=LOC11101... [more]
A0A5D3CDF51.4e-27080.43NAC domain-containing protein 53-like OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A1S3BGS51.4e-27080.43NAC domain-containing protein 53-like OS=Cucumis melo OX=3656 GN=LOC103489428 PE... [more]
A0A6J1GY693.1e-27080.27NAC domain-containing protein 53-like OS=Cucurbita moschata OX=3662 GN=LOC111458... [more]
A0A6J1IQZ31.5e-26980.27NAC domain-containing protein 53-like OS=Cucurbita maxima OX=3661 GN=LOC11147725... [more]
Match NameE-valueIdentityDescription
AT5G04410.15.4e-12644.85NAC domain containing protein 2 [more]
AT3G10500.11.9e-12344.92NAC domain containing protein 53 [more]
AT3G10480.18.5e-7149.37NAC domain containing protein 50 [more]
AT3G10480.28.5e-7149.21NAC domain containing protein 50 [more]
AT3G10490.11.9e-7060.37NAC domain containing protein 52 [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036093NAC domain superfamilyGENE3D2.170.150.80NAC domaincoord: 18..162
e-value: 2.7E-55
score: 188.4
IPR036093NAC domain superfamilySUPERFAMILY101941NAC domaincoord: 7..159
IPR003441NAC domainPFAMPF02365NAMcoord: 11..136
e-value: 2.4E-36
score: 125.5
IPR003441NAC domainPROSITEPS51005NACcoord: 9..159
score: 57.082031
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 406..436
NoneNo IPR availablePANTHERPTHR31989NAC DOMAIN-CONTAINING PROTEIN 82-RELATEDcoord: 1..298
coord: 464..594
NoneNo IPR availablePANTHERPTHR31989:SF365NAC DOMAIN-CONTAINING PROTEIN 78coord: 1..298
NoneNo IPR availablePANTHERPTHR31989:SF365NAC DOMAIN-CONTAINING PROTEIN 78coord: 464..594

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS004192.1MS004192.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003677 DNA binding