MS001212 (gene) Bitter gourd (TR) v1

Overview


Name	MS001212
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold36: 2324284 .. 2324424 (+)
RNA-Seq Expression	MS001212
Synteny	MS001212

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGGCGGCGGCGGAGGCGCCCTTGATGCTGAGGGCGGCCACGTCGTGTGCGCGGGCCGCCATTTCAGGGGTCGGGAAAGTGCCGAGCCAAATGCGCGATTTCTTGCGTGGCTCGCGGATTTCGGACACCCATTTCCCCCAA

mRNA sequence

AGGGCGGCGGCGGAGGCGCCCTTGATGCTGAGGGCGGCCACGTCGTGTGCGCGGGCCGCCATTTCAGGGGTCGGGAAAGTGCCGAGCCAAATGCGCGATTTCTTGCGTGGCTCGCGGATTTCGGACACCCATTTCCCCCAA

Coding sequence (CDS)

AGGGCGGCGGCGGAGGCGCCCTTGATGCTGAGGGCGGCCACGTCGTGTGCGCGGGCCGCCATTTCAGGGGTCGGGAAAGTGCCGAGCCAAATGCGCGATTTCTTGCGTGGCTCGCGGATTTCGGACACCCATTTCCCCCAA

Protein sequence

RAAAEAPLMLRAATSCARAAISGVGKVPSQMRDFLRGSRISDTHFPQ

Homology

[Close]

BLAST of MS001212 vs. NCBI nr
Match: PPD82210.1 (hypothetical protein GOBAR_DD20833 [Gossypium barbadense])

HSP 1 Score: 81.3 bits (199), Expect = 2.5e-12
Identity = 40/44 (90.91%), Postives = 42/44 (95.45%), Query Frame = 0


Query: 4  AEAPLMLRAATSCARAAISGVGKVPSQMRDFLRGSRISDTHFPQ 48
          AE PL+L+AATSCARAAISGVGKVPSQMRDFLRGSRISDTH PQ
Sbjct: 50 AELPLILKAATSCARAAISGVGKVPSQMRDFLRGSRISDTHLPQ 93

[Close]

BLAST of MS001212 vs. NCBI nr
Match: KYP54164.1 (hypothetical protein KK1_000338 [Cajanus cajan])

HSP 1 Score: 77.8 bits (190), Expect = 2.8e-11
Identity = 40/44 (90.91%), Postives = 41/44 (93.18%), Query Frame = 0


Query: 4  AEAPLMLRAATSCARAAISGVGKVPSQMRDFLRGSRISDTHFPQ 48
          AE PLM+RAATS ARAAISGV KVPSQMRDFLRGSRISDTHFPQ
Sbjct: 23 AEWPLMVRAATSWARAAISGVAKVPSQMRDFLRGSRISDTHFPQ 66

[Close]

BLAST of MS001212 vs. NCBI nr
Match: PUZ48314.1 (hypothetical protein GQ55_7G236000 [Panicum hallii var. hallii])

HSP 1 Score: 75.1 bits (183), Expect = 1.8e-10
Identity = 38/44 (86.36%), Postives = 38/44 (86.36%), Query Frame = 0


Query: 4   AEAPLMLRAATSCARAAISGVGKVPSQMRDFLRGSRISDTHFPQ 48
           A  PLM  AATSCARAAIS VGKVPSQMRDFLRGSRISDTH PQ
Sbjct: 158 AARPLMASAATSCARAAISAVGKVPSQMRDFLRGSRISDTHLPQ 201

[Close]

BLAST of MS001212 vs. NCBI nr
Match: CAA2626730.1 (unnamed protein product [Spirodela intermedia])

HSP 1 Score: 74.3 bits (181), Expect = 3.1e-10
Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = 0


Query: 9  MLRAATSCARAAISGVGKVPSQMRDFLRGSRISDTHFPQ 48
          ML AATSCARAAISGVGKVPSQ+RDFLRGSRIS+THFPQ
Sbjct: 1  MLSAATSCARAAISGVGKVPSQIRDFLRGSRISETHFPQ 39

[Close]

BLAST of MS001212 vs. NCBI nr
Match: EYU29278.1 (hypothetical protein MIMGU_mgv1a014180mg [Erythranthe guttata])

HSP 1 Score: 74.3 bits (181), Expect = 3.1e-10
Identity = 38/44 (86.36%), Postives = 40/44 (90.91%), Query Frame = 0


Query: 4   AEAPLMLRAATSCARAAISGVGKVPSQMRDFLRGSRISDTHFPQ 48
           AEAPLML AATS ARAAISGVGKVPS +RDFLRGSRIS+TH PQ
Sbjct: 80  AEAPLMLSAATSWARAAISGVGKVPSHIRDFLRGSRISETHLPQ 123

[Close]

BLAST of MS001212 vs. ExPASy TrEMBL
Match: A0A7C9DWE3 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.1e-12
Identity = 39/43 (90.70%), Postives = 41/43 (95.35%), Query Frame = 0


Query: 4  AEAPLMLRAATSCARAAISGVGKVPSQMRDFLRGSRISDTHFP 47
          AE+PLML AATSCARAAISG+GKVPSQMRDF RGSRISDTHFP
Sbjct: 54 AESPLMLNAATSCARAAISGLGKVPSQMRDFFRGSRISDTHFP 96

[Close]

BLAST of MS001212 vs. ExPASy TrEMBL
Match: A0A151SH45 (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_000338 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.3e-11
Identity = 40/44 (90.91%), Postives = 41/44 (93.18%), Query Frame = 0


Query: 4  AEAPLMLRAATSCARAAISGVGKVPSQMRDFLRGSRISDTHFPQ 48
          AE PLM+RAATS ARAAISGV KVPSQMRDFLRGSRISDTHFPQ
Sbjct: 23 AEWPLMVRAATSWARAAISGVAKVPSQMRDFLRGSRISDTHFPQ 66

[Close]

BLAST of MS001212 vs. ExPASy TrEMBL
Match: A0A2T7CYD0 (Uncharacterized protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_7G236000 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 8.7e-11
Identity = 38/44 (86.36%), Postives = 38/44 (86.36%), Query Frame = 0


Query: 4   AEAPLMLRAATSCARAAISGVGKVPSQMRDFLRGSRISDTHFPQ 48
           A  PLM  AATSCARAAIS VGKVPSQMRDFLRGSRISDTH PQ
Sbjct: 158 AARPLMASAATSCARAAISAVGKVPSQMRDFLRGSRISDTHLPQ 201

[Close]

BLAST of MS001212 vs. ExPASy TrEMBL
Match: A0A022QPP6 (Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a014180mg PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.5e-10
Identity = 38/44 (86.36%), Postives = 40/44 (90.91%), Query Frame = 0


Query: 4   AEAPLMLRAATSCARAAISGVGKVPSQMRDFLRGSRISDTHFPQ 48
           AEAPLML AATS ARAAISGVGKVPS +RDFLRGSRIS+TH PQ
Sbjct: 80  AEAPLMLSAATSWARAAISGVGKVPSHIRDFLRGSRISETHLPQ 123

[Close]

BLAST of MS001212 vs. ExPASy TrEMBL
Match: A0A7I8J702 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_09012417 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.5e-10
Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = 0


Query: 9  MLRAATSCARAAISGVGKVPSQMRDFLRGSRISDTHFPQ 48
          ML AATSCARAAISGVGKVPSQ+RDFLRGSRIS+THFPQ
Sbjct: 1  MLSAATSCARAAISGVGKVPSQIRDFLRGSRISETHFPQ 39

The following BLAST results are available for this feature:

BLAST of MS001212 vs. NCBI nr


Match Name	E-value	Identity	Description
PPD82210.1	2.5e-12	90.91	hypothetical protein GOBAR_DD20833 [Gossypium barbadense]	[more]
KYP54164.1	2.8e-11	90.91	hypothetical protein KK1_000338 [Cajanus cajan]	[more]
PUZ48314.1	1.8e-10	86.36	hypothetical protein GQ55_7G236000 [Panicum hallii var. hallii]	[more]
CAA2626730.1	3.1e-10	92.31	unnamed protein product [Spirodela intermedia]	[more]
EYU29278.1	3.1e-10	86.36	hypothetical protein MIMGU_mgv1a014180mg [Erythranthe guttata]	[more]

BLAST of MS001212 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS001212 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7C9DWE3	2.1e-12	90.70	Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1	[more]
A0A151SH45	1.3e-11	90.91	Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_000338 PE=4 SV=1	[more]
A0A2T7CYD0	8.7e-11	86.36	Uncharacterized protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_7G23600...	[more]
A0A022QPP6	1.5e-10	86.36	Uncharacterized protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a014180mg PE...	[more]
A0A7I8J702	1.5e-10	92.31	Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_09012417 PE=4 SV...	[more]

BLAST of MS001212 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS001212.1	MS001212.1	mRNA