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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGAACAATCCGAGTCCGAAGATCGATTTCTCCATTCCCAAGCTCTCTCTGTTCAATCGGATCGAATCCAGATGCAGAATCCTCCCTCCAAACCACACTCTTATCAATCCCTCCGCCTTCCCGATTTCCCGCTGCGATTCCGTGCTTTTCGCCGTGATTCTGAAGAACGGCCCCAAGGTTTGGAGCCGGAGGTCCAGATTCTGGGCCGCGCCGGCCGCCAAAATCTCACGCATCGTCGGTATGTTATCTTCTCTGGATTTCAGTGGTTTTGGCGATTTTGAAGGGGCTGGTAATTGGGAATTAGGGCATTTGGATGAGGAAGAGGAGGAGGCGTGGATTTTACTAAGGAATCTTGGAATTGGCGAGAAATTTTGGGGGATTCGGGAAATTGTTTGA mRNA sequence ATGAACAATCCGAGTCCGAAGATCGATTTCTCCATTCCCAAGCTCTCTCTGTTCAATCGGATCGAATCCAGATGCAGAATCCTCCCTCCAAACCACACTCTTATCAATCCCTCCGCCTTCCCGATTTCCCGCTGCGATTCCGTGCTTTTCGCCGTGATTCTGAAGAACGGCCCCAAGGTTTGGAGCCGGAGGTCCAGATTCTGGGCCGCGCCGGCCGCCAAAATCTCACGCATCGTCGGTATGTTATCTTCTCTGGATTTCAGTGGTTTTGGCGATTTTGAAGGGGCTGGTAATTGGGAATTAGGGCATTTGGATGAGGAAGAGGAGGAGGCGTGGATTTTACTAAGGAATCTTGGAATTGGCGAGAAATTTTGGGGGATTCGGGAAATTGTTTGA Coding sequence (CDS) ATGAACAATCCGAGTCCGAAGATCGATTTCTCCATTCCCAAGCTCTCTCTGTTCAATCGGATCGAATCCAGATGCAGAATCCTCCCTCCAAACCACACTCTTATCAATCCCTCCGCCTTCCCGATTTCCCGCTGCGATTCCGTGCTTTTCGCCGTGATTCTGAAGAACGGCCCCAAGGTTTGGAGCCGGAGGTCCAGATTCTGGGCCGCGCCGGCCGCCAAAATCTCACGCATCGTCGGTATGTTATCTTCTCTGGATTTCAGTGGTTTTGGCGATTTTGAAGGGGCTGGTAATTGGGAATTAGGGCATTTGGATGAGGAAGAGGAGGAGGCGTGGATTTTACTAAGGAATCTTGGAATTGGCGAGAAATTTTGGGGGATTCGGGAAATTGTTTGA Protein sequence MNNPSPKIDFSIPKLSLFNRIESRCRILPPNHTLINPSAFPISRCDSVLFAVILKNGPKVWSRRSRFWAAPAAKISRIVGMLSSLDFSGFGDFEGAGNWELGHLDEEEEEAWILLRNLGIGEKFWGIREIV
Homology
BLAST of MS026247 vs. NCBI nr
Match: ERN02758.1 (hypothetical protein AMTR_s00086p00036940 [Amborella trichopoda]) HSP 1 Score: 68.6 bits (166), Expect = 4.7e-08 Identity = 45/92 (48.91%), Postives = 50/92 (54.35%), Query Frame = 0
Query: 2 NNPSPKIDFSIPKLSLFNRIESRCR----ILPPNHTLINPSAFPISRCDSVLFAVILKNG 61
N PSPKID SIP +SL IESRC+ IL N +L+ PSA P S + L AV LK G
Sbjct: 23 NKPSPKIDLSIPIVSLLILIESRCKILSIILSLNQSLMKPSALPSSCWVAKLVAVTLKKG 82
Query: 62 PKVWSRRSRFWAAPAAKISRIVGMLSSLDFSG 90
PKV FW A S I GM S L G
Sbjct: 83 PKVLRWSFMFWLREEAINSDIEGMGSLLQTVG 114
BLAST of MS026247 vs. NCBI nr
Match: KAG9129828.1 (hypothetical protein Leryth_016016 [Lithospermum erythrorhizon]) HSP 1 Score: 54.3 bits (129), Expect = 9.2e-04 Identity = 30/54 (55.56%), Postives = 34/54 (62.96%), Query Frame = 0
Query: 27 ILPPNHTLINPSAFPISRCDSVLFAVILKNGPKVWSRRSRFWAAPAAKISRIVG 81
I P NHTL +PSA P S S+L AV KNGPKV + RSRF A + IS I G
Sbjct: 16 IFPSNHTLSSPSALPSSLPVSILLAVTRKNGPKVCNCRSRFCALDVSMISDIDG 69
BLAST of MS026247 vs. ExPASy TrEMBL
Match: W1P4B8 (Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00086p00036940 PE=4 SV=1) HSP 1 Score: 68.6 bits (166), Expect = 2.3e-08 Identity = 45/92 (48.91%), Postives = 50/92 (54.35%), Query Frame = 0
Query: 2 NNPSPKIDFSIPKLSLFNRIESRCR----ILPPNHTLINPSAFPISRCDSVLFAVILKNG 61
N PSPKID SIP +SL IESRC+ IL N +L+ PSA P S + L AV LK G
Sbjct: 23 NKPSPKIDLSIPIVSLLILIESRCKILSIILSLNQSLMKPSALPSSCWVAKLVAVTLKKG 82
Query: 62 PKVWSRRSRFWAAPAAKISRIVGMLSSLDFSG 90
PKV FW A S I GM S L G
Sbjct: 83 PKVLRWSFMFWLREEAINSDIEGMGSLLQTVG 114
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| ERN02758.1 | 4.7e-08 | 48.91 | hypothetical protein AMTR_s00086p00036940 [Amborella trichopoda] | [more] |
| KAG9129828.1 | 9.2e-04 | 55.56 | hypothetical protein Leryth_016016 [Lithospermum erythrorhizon] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| W1P4B8 | 2.3e-08 | 48.91 | Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00086p00036940... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
The following mRNA feature(s) are a part of this gene:
| Feature Name | Unique Name | Type |
|---|
| MS026247.1 | MS026247.1 | mRNA |
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