MC09g_new0257 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC09g_new0257
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC09: 12204839 .. 12205242 (+)
RNA-Seq Expression	MC09g_new0257
Synteny	MC09g_new0257

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGATGATGCTCGACTGTCGGAAATCTCTTTGTTGGATGCCGATAGTGCTATTATGGCTGACAAAATCAAAGGCAACATTGTTATGTATGGTTTGTGACTTCATCATCATGGCATTTTGAATAGTTATTAGGCACAAAATTGGAGAGGGCAACCATCTGCGATTTCTTGGGATGACTCTACATCTTCATTGCACTCTTGTTCAGAAAACTTATATTTCCATATGCAATGGTGAAAAAGCAAAATGTGGGTGATGGTGGAGGTGCAGTGGTGATCGACTCAAACAAAGTTTTGGAATTTGTTGAGGATATCAGTATTTATTGTATTGAGATTCACCAACATGATTTGGGAAATTTGTCCAGTCCTTCCCTACTGGTCATAGTGGAAGATAAGCAACTTTAA

mRNA sequence

ATGGTGGATGATGCTCGACTGTCGGAAATCTCTTTGTTGGATGCCGATAGTGCTATTATGGCTGACAAAATCAAAGGCAACATTGTTATAAAACTTATATTTCCATATGCAATGGTGAAAAAGCAAAATGTGGGTGATGGTGGAGGTGCAGTGGTGATCGACTCAAACAAAGTTTTGGAATTTGTTGAGGATATCAGTATTTATTGTATTGAGATTCACCAACATGATTTGGGAAATTTGTCCAGTCCTTCCCTACTGGTCATAGTGGAAGATAAGCAACTTTAA

Coding sequence (CDS)

ATGGTGGATGATGCTCGACTGTCGGAAATCTCTTTGTTGGATGCCGATAGTGCTATTATGGCTGACAAAATCAAAGGCAACATTGTTATAAAACTTATATTTCCATATGCAATGGTGAAAAAGCAAAATGTGGGTGATGGTGGAGGTGCAGTGGTGATCGACTCAAACAAAGTTTTGGAATTTGTTGAGGATATCAGTATTTATTGTATTGAGATTCACCAACATGATTTGGGAAATTTGTCCAGTCCTTCCCTACTGGTCATAGTGGAAGATAAGCAACTTTAA

Protein sequence

MVDDARLSEISLLDADSAIMADKIKGNIVIKLIFPYAMVKKQNVGDGGGAVVIDSNKVLEFVEDISIYCIEIHQHDLGNLSSPSLLVIVEDKQL

Homology

[Close]

BLAST of MC09g_new0257 vs. NCBI nr
Match: XP_022159860.1 (uncharacterized protein LOC111026150 [Momordica charantia])

HSP 1 Score: 77.4 bits (189), Expect = 7.02e-16
Identity = 52/106 (49.06%), Postives = 65/106 (61.32%), Query Frame = 0


Query: 1   MVDDARLSEISLLDADSAIMADKIKGNIVI--------KLIFPY-----AMVKKQNVGDG 60
           M D   +SEIS LDA+SA++ DKIK NIV+         ++  Y       + +Q VGD 
Sbjct: 1   MADSDWMSEISPLDANSAVVVDKIKANIVMYGPWHRHHDVLKSYHAQNWTRMMEQKVGDD 60

Query: 61  GGAVVIDSNKVLEFVEDISIYCIEIH-QHDLGNLSSPSLLVIVEDK 92
           GGA  I SN VL  VE I++ C+EI  QHD GNLS+PSL V VEDK
Sbjct: 61  GGAATIKSNTVLGSVEVINLNCLEIPCQHDFGNLSNPSLPVTVEDK 106

[Close]

BLAST of MC09g_new0257 vs. ExPASy TrEMBL
Match: A0A6J1DZZ2 (uncharacterized protein LOC111026150 OS=Momordica charantia OX=3673 GN=LOC111026150 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.40e-16
Identity = 52/106 (49.06%), Postives = 65/106 (61.32%), Query Frame = 0


Query: 1   MVDDARLSEISLLDADSAIMADKIKGNIVI--------KLIFPY-----AMVKKQNVGDG 60
           M D   +SEIS LDA+SA++ DKIK NIV+         ++  Y       + +Q VGD 
Sbjct: 1   MADSDWMSEISPLDANSAVVVDKIKANIVMYGPWHRHHDVLKSYHAQNWTRMMEQKVGDD 60

Query: 61  GGAVVIDSNKVLEFVEDISIYCIEIH-QHDLGNLSSPSLLVIVEDK 92
           GGA  I SN VL  VE I++ C+EI  QHD GNLS+PSL V VEDK
Sbjct: 61  GGAATIKSNTVLGSVEVINLNCLEIPCQHDFGNLSNPSLPVTVEDK 106

The following BLAST results are available for this feature:

BLAST of MC09g_new0257 vs.


Match Name	E-value	Identity	Description

BLAST of MC09g_new0257 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022159860.1	7.02e-16	49.06	uncharacterized protein LOC111026150 [Momordica charantia]	[more]

BLAST of MC09g_new0257 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DZZ2	3.40e-16	49.06	uncharacterized protein LOC111026150 OS=Momordica charantia OX=3673 GN=LOC111026...	[more]

BLAST of MC09g_new0257 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC09g_new0257.1	MC09g_new0257.1	mRNA