MC11g_new0294 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC11g_new0294
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC11: 12365917 .. 12366860 (-)
RNA-Seq Expression	MC11g_new0294
Synteny	MC11g_new0294

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGGCGAAGTCGTCTCGACGGAGAAGGGTGAGCCTCCTGCCAAAAGAATTCAACTCGAGGCCCACCAGGACTTAAACTTCAAACACAGCGAGCGACGGAATCAAGTCAGTCGTTCAAAAAGTCGCAGAATAGTGCATGGCCAGGGTAGTCCAGAGTCAGCATCTCGCCATGATGCCAGCTGCGGGGAACATTCATCGAGCTATGTACACCGTAGCTGATGTGAGCTCGCGATACTTCTTATAATTCGTAGCTTCATGATCTGGCATGACAATTTCCCTTATTGCAGGCCCTTATGGTGGTGTGCCAAACAACAGCTCAGACTAAGCTTGAGCTGGACTGGCGTGACGAGTTGCTTCGGGGGGGGAGAAGAAGTCTTGCAAGACAGCTCTGTTGGACACCAAGGTGAAGAGGGACGAGAACTTAAAGCTGAAGGCTAACTTGCGAGCTGCGAATGACACAATGGCCAAGATGAGCGAGCAGGTGGCCAGTTGTAAGGCCACCATGAAAGAAGTAACTGAGAGGCTCCACAACTATGAAGATATGGAAGCCAAAACTGTTTCCCTCTATAAGGATCTTGACGACATGCATGCTGAAAATAAAGCCTTGCAGAATGAGCTGACTACTTTTCAGGTGAACCTTAAGGATGGTAAATTTGTTGAGGCGTCTTCAAAACCACCTCGACTTACACTACCTTCGTAAAGGACTTCATGGATAGGGACTCAAGTTTGCCCTGAGCGAGCTGATAAGAACACACCCTGAACTGGATCTCTTTGAGGTGAAGAGAGCTTATGTGGAAGAATGGCCTACTCTATCAGACAAGTCTAAGGCTCCGGAGGATGTCATCGCCAAATATATGAAGCAGCTCTTCTTGGATGAAGAAGATGTAGACAATACTGGCACGAGCTCATATGAGAATCAAGATGATCCAGCTCAAGTCTAG

mRNA sequence

ATGGGGGGCGAAGTCGTCTCGACGGAGAAGGGTGAGCCTCCTGCCAAAAGAATTCAACTCGAGGCCCACCAGGACTTAAACTTCAAACACAGCGAGCGACGGAATCAAGTCAGTCGTTCAAAAAGTCGCAGAATAGTGCATGGCCAGGGTAGTCCAGAGTCAGCATCTCGCCATGATGCCAGCTGCGGGGAACATTCATCGAGCTATGTGAAGAGGGACGAGAACTTAAAGCTGAAGGCTAACTTGCGAGCTGCGAATGACACAATGGCCAAGATGAGCGAGCAGGTGGCCAGTTGTAAGGCCACCATGAAAGAAGTAACTGAGAGGCTCCACAACTATGAAGATATGGAAGCCAAAACTGTTTCCCTCTATAAGGATCTTGACGACATGCATGCTGAAAATAAAGCCTTGCAGAATGAGCTGACTACTTTTCAGGGACTCAAGTTTGCCCTGAGCGAGCTGATAAGAACACACCCTGAACTGGATCTCTTTGAGGTGAAGAGAGCTTATGTGGAAGAATGGCCTACTCTATCAGACAAGTCTAAGGCTCCGGAGGATGTCATCGCCAAATATATGAAGCAGCTCTTCTTGGATGAAGAAGATGTAGACAATACTGGCACGAGCTCATATGAGAATCAAGATGATCCAGCTCAAGTCTAG

Coding sequence (CDS)

ATGGGGGGCGAAGTCGTCTCGACGGAGAAGGGTGAGCCTCCTGCCAAAAGAATTCAACTCGAGGCCCACCAGGACTTAAACTTCAAACACAGCGAGCGACGGAATCAAGTCAGTCGTTCAAAAAGTCGCAGAATAGTGCATGGCCAGGGTAGTCCAGAGTCAGCATCTCGCCATGATGCCAGCTGCGGGGAACATTCATCGAGCTATGTGAAGAGGGACGAGAACTTAAAGCTGAAGGCTAACTTGCGAGCTGCGAATGACACAATGGCCAAGATGAGCGAGCAGGTGGCCAGTTGTAAGGCCACCATGAAAGAAGTAACTGAGAGGCTCCACAACTATGAAGATATGGAAGCCAAAACTGTTTCCCTCTATAAGGATCTTGACGACATGCATGCTGAAAATAAAGCCTTGCAGAATGAGCTGACTACTTTTCAGGGACTCAAGTTTGCCCTGAGCGAGCTGATAAGAACACACCCTGAACTGGATCTCTTTGAGGTGAAGAGAGCTTATGTGGAAGAATGGCCTACTCTATCAGACAAGTCTAAGGCTCCGGAGGATGTCATCGCCAAATATATGAAGCAGCTCTTCTTGGATGAAGAAGATGTAGACAATACTGGCACGAGCTCATATGAGAATCAAGATGATCCAGCTCAAGTCTAG

Protein sequence

MGGEVVSTEKGEPPAKRIQLEAHQDLNFKHSERRNQVSRSKSRRIVHGQGSPESASRHDASCGEHSSSYVKRDENLKLKANLRAANDTMAKMSEQVASCKATMKEVTERLHNYEDMEAKTVSLYKDLDDMHAENKALQNELTTFQGLKFALSELIRTHPELDLFEVKRAYVEEWPTLSDKSKAPEDVIAKYMKQLFLDEEDVDNTGTSSYENQDDPAQV

Homology

[Close]

BLAST of MC11g_new0294 vs. NCBI nr
Match: XP_022155848.1 (uncharacterized protein LOC111022872 [Momordica charantia] >XP_022155849.1 uncharacterized protein LOC111022872 [Momordica charantia])

HSP 1 Score: 151 bits (382), Expect = 2.85e-42
Identity = 83/161 (51.55%), Postives = 105/161 (65.22%), Query Frame = 0


Query: 83  RAANDTMAKMSEQVASCKATMKEVTERLHNYEDMEAKTVSLYKDLDDMHAENKALQNEL- 142
           +AANDTM +M++Q+A CKATMKEVTER+HN+E +EAKT+SL +DLD   AE + ++ E  
Sbjct: 24  QAANDTMTEMNDQMAKCKATMKEVTERIHNFEALEAKTISLKQDLDSARAEKEVVEKEFR 83

Query: 143 ----------------------TTF------QGLKFALSELIRTHPELDLFEVKRAYVEE 202
                                 T F       GLKFA+ EL  THP +DL ++KR YVEE
Sbjct: 84  DICAKLSDGKYAKEMVKKTPSYTPFAKDFMGSGLKFAIMELKMTHPNIDLTKMKRIYVEE 143

Query: 203 WPTLSDKSKAPEDVIAKYMKQLFLDEEDVDNTGTSSYENQD 214
           W TL DK+KA E+VI KY+K+LF  +EDVDN GTSS ENQD
Sbjct: 144 WTTLPDKTKASEEVITKYVKELFSKDEDVDNAGTSSQENQD 184

[Close]

BLAST of MC11g_new0294 vs. ExPASy TrEMBL
Match: A0A6J1DRG7 (uncharacterized protein LOC111022872 OS=Momordica charantia OX=3673 GN=LOC111022872 PE=4 SV=1)

HSP 1 Score: 151 bits (382), Expect = 1.38e-42
Identity = 83/161 (51.55%), Postives = 105/161 (65.22%), Query Frame = 0


Query: 83  RAANDTMAKMSEQVASCKATMKEVTERLHNYEDMEAKTVSLYKDLDDMHAENKALQNEL- 142
           +AANDTM +M++Q+A CKATMKEVTER+HN+E +EAKT+SL +DLD   AE + ++ E  
Sbjct: 24  QAANDTMTEMNDQMAKCKATMKEVTERIHNFEALEAKTISLKQDLDSARAEKEVVEKEFR 83

Query: 143 ----------------------TTF------QGLKFALSELIRTHPELDLFEVKRAYVEE 202
                                 T F       GLKFA+ EL  THP +DL ++KR YVEE
Sbjct: 84  DICAKLSDGKYAKEMVKKTPSYTPFAKDFMGSGLKFAIMELKMTHPNIDLTKMKRIYVEE 143

Query: 203 WPTLSDKSKAPEDVIAKYMKQLFLDEEDVDNTGTSSYENQD 214
           W TL DK+KA E+VI KY+K+LF  +EDVDN GTSS ENQD
Sbjct: 144 WTTLPDKTKASEEVITKYVKELFSKDEDVDNAGTSSQENQD 184

The following BLAST results are available for this feature:

BLAST of MC11g_new0294 vs.


Match Name	E-value	Identity	Description

BLAST of MC11g_new0294 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155848.1	2.85e-42	51.55	uncharacterized protein LOC111022872 [Momordica charantia] >XP_022155849.1 uncha...	[more]

BLAST of MC11g_new0294 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DRG7	1.38e-42	51.55	uncharacterized protein LOC111022872 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]

BLAST of MC11g_new0294 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 75..116
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..39
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC11g_new0294.1	MC11g_new0294.1	mRNA