Csor.00g302380 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g302380
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	LOW QUALITY PROTEIN: putative fasciclin-like arabinogalactan protein 20
Location	Csor_Chr18: 11162767 .. 11163210 (-)
RNA-Seq Expression	Csor.00g302380
Synteny	Csor.00g302380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGAAGCTTAAACACAGCCTCTTCAATGGCTTCCACACTCTTCATCTCTCATCCTTCTCTCACTCTTCTCTCTATCTTGTCCGACAATGGCTTCGTCTCCATGGCCGTGATGCTCCAGCTCATAGCCCAATCCTTGCTCTCTCAATCCAATTCAATCACAATCTTCTCACCTTCAGATACTGCTTTCGCCCAATCCGGTCAGCCTTCTCTCTCTCTCTCTTCTTCGATTCCATTTCTTGCCTCTCTACTTATCTCCCGAATGCCTCAAATCGCTCGCGTTGGGGCACCAAGATTTCCACGATGTTGGCCGATCGATCGCTCACGGTAACCTCTTCCCGATATTTTCATGAAATTTCTTTGAATCGAGTCATGATCAGTAGCTCGCCGATTTACGATGACGTTCGCTCCTTGTTTTTGGCACCGATAAGTTTTTTGACCTGA

mRNA sequence

ATGCCGAAGCTTAAACACAGCCTCTTCAATGGCTTCCACACTCTTCATCTCTCATCCTTCTCTCACTCTTCTCTCTATCTTGTCCGACAATGGCTTCGTCTCCATGGCCGTGATGCTCCAGCTCATAGCCCAATCCTTGCTCTCTCAATCCAATTCAATCACAATCTTCTCACCTTCAGATACTGCTTTCGCCCAATCCGGTCAGCCTTCTCTCTCTCTCTCTTCTTCGATTCCATTTCTTGCCTCTCTACTTATCTCCCGAATGCCTCAAATCGCTCGCGTTGGGGCACCAAGATTTCCACGATGTTGGCCGATCGATCGCTCACGGTAACCTCTTCCCGATATTTTCATGAAATTTCTTTGAATCGAGTCATGATCAGTAGCTCGCCGATTTACGATGACGTTCGCTCCTTGTTTTTGGCACCGATAAGTTTTTTGACCTGA

Coding sequence (CDS)

ATGCCGAAGCTTAAACACAGCCTCTTCAATGGCTTCCACACTCTTCATCTCTCATCCTTCTCTCACTCTTCTCTCTATCTTGTCCGACAATGGCTTCGTCTCCATGGCCGTGATGCTCCAGCTCATAGCCCAATCCTTGCTCTCTCAATCCAATTCAATCACAATCTTCTCACCTTCAGATACTGCTTTCGCCCAATCCGGTCAGCCTTCTCTCTCTCTCTCTTCTTCGATTCCATTTCTTGCCTCTCTACTTATCTCCCGAATGCCTCAAATCGCTCGCGTTGGGGCACCAAGATTTCCACGATGTTGGCCGATCGATCGCTCACGGTAACCTCTTCCCGATATTTTCATGAAATTTCTTTGAATCGAGTCATGATCAGTAGCTCGCCGATTTACGATGACGTTCGCTCCTTGTTTTTGGCACCGATAAGTTTTTTGACCTGA

Protein sequence

MPKLKHSLFNGFHTLHLSSFSHSSLYLVRQWLRLHGRDAPAHSPILALSIQFNHNLLTFRYCFRPIRSAFSLSLFFDSISCLSTYLPNASNRSRWGTKISTMLADRSLTVTSSRYFHEISLNRVMISSSPIYDDVRSLFLAPISFLT

Homology

[Close]

BLAST of Csor.00g302380 vs. NCBI nr
Match: KAG6573921.1 (hypothetical protein SDJN03_27808, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 293 bits (750), Expect = 5.73e-100
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 1   MPKLKHSLFNGFHTLHLSSFSHSSLYLVRQWLRLHGRDAPAHSPILALSIQFNHNLLTFR 60
           MPKLKHSLFNGFHTLHLSSFSHSSLYLVRQWLRLHGRDAPAHSPILALSIQFNHNLLTFR
Sbjct: 1   MPKLKHSLFNGFHTLHLSSFSHSSLYLVRQWLRLHGRDAPAHSPILALSIQFNHNLLTFR 60

Query: 61  YCFRPIRSAFSLSLFFDSISCLSTYLPNASNRSRWGTKISTMLADRSLTVTSSRYFHEIS 120
           YCFRPIRSAFSLSLFFDSISCLSTYLPNASNRSRWGTKISTMLADRSLTVTSSRYFHEIS
Sbjct: 61  YCFRPIRSAFSLSLFFDSISCLSTYLPNASNRSRWGTKISTMLADRSLTVTSSRYFHEIS 120

Query: 121 LNRVMISSSPIYDDVRSLFLAPISFLT 147
           LNRVMISSSPIYDDVRSLFLAPISFLT
Sbjct: 121 LNRVMISSSPIYDDVRSLFLAPISFLT 147

[Close]

BLAST of Csor.00g302380 vs. NCBI nr
Match: XP_022945764.1 (LOW QUALITY PROTEIN: putative fasciclin-like arabinogalactan protein 20 [Cucurbita moschata])

HSP 1 Score: 146 bits (368), Expect = 2.19e-40
Identity = 83/108 (76.85%), Postives = 88/108 (81.48%), Query Frame = 0


Query: 45  ILALSIQFNHNLLTFRYCFRPIRSAF------SLSLFFDSISCLSTYLPNASNRSRWGTK 104
           ++A S+    N +T    F P  +AF      SLSL FDSISCLSTYLPNASNRSRWGTK
Sbjct: 32  LIAQSLLSQSNSITI---FSPSDTAFAQSGQPSLSLSFDSISCLSTYLPNASNRSRWGTK 91

Query: 105 ISTMLADRSLTVTSSRYFHEISLNRVMISSSPIYDDVRSLFLAPISFL 146
           ISTMLADRSLTVTSSRYFHEISLNRVMISSSPIYDDVRSLFLAPISFL
Sbjct: 92  ISTMLADRSLTVTSSRYFHEISLNRVMISSSPIYDDVRSLFLAPISFL 136

[Close]

BLAST of Csor.00g302380 vs. NCBI nr
Match: XP_022967990.1 (LOW QUALITY PROTEIN: putative fasciclin-like arabinogalactan protein 20, partial [Cucurbita maxima])

HSP 1 Score: 75.5 bits (184), Expect = 2.64e-13
Identity = 38/39 (97.44%), Postives = 38/39 (97.44%), Query Frame = 0


Query: 96  GTKISTMLADRSLTVTSSRYFHEISLNRVMISSSPIYDD 134
           GTKI TMLADRSLTVTSSRYFHEISLNRVMISSSPIYDD
Sbjct: 40  GTKIPTMLADRSLTVTSSRYFHEISLNRVMISSSPIYDD 78

[Close]

BLAST of Csor.00g302380 vs. NCBI nr
Match: KAG7032046.1 (putative fasciclin-like arabinogalactan protein 20, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 53.5 bits (127), Expect = 4.80e-05
Identity = 28/39 (71.79%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 96  GTKISTMLADRSLTVTSSRYFHEISLNRVMISSSPIYDD 134
           GTKI TMLA RSLTVTSSR   ++SLN V IS+SP+YDD
Sbjct: 100 GTKIPTMLAGRSLTVTSSRSDSKVSLNGVKISNSPLYDD 138

[Close]

BLAST of Csor.00g302380 vs. NCBI nr
Match: XP_022983481.1 (putative fasciclin-like arabinogalactan protein 20 [Cucurbita maxima])

HSP 1 Score: 53.5 bits (127), Expect = 4.80e-05
Identity = 28/39 (71.79%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 96  GTKISTMLADRSLTVTSSRYFHEISLNRVMISSSPIYDD 134
           GTKI TMLA RSLTVTSS+   E+SLN V IS+SP+YDD
Sbjct: 100 GTKIPTMLAGRSLTVTSSQSDSEVSLNGVKISNSPLYDD 138

[Close]

BLAST of Csor.00g302380 vs. ExPASy TrEMBL
Match: A0A6J1G1W2 (LOW QUALITY PROTEIN: putative fasciclin-like arabinogalactan protein 20 OS=Cucurbita moschata OX=3662 GN=LOC111449908 PE=4 SV=1)

HSP 1 Score: 146 bits (368), Expect = 1.06e-40
Identity = 83/108 (76.85%), Postives = 88/108 (81.48%), Query Frame = 0


Query: 45  ILALSIQFNHNLLTFRYCFRPIRSAF------SLSLFFDSISCLSTYLPNASNRSRWGTK 104
           ++A S+    N +T    F P  +AF      SLSL FDSISCLSTYLPNASNRSRWGTK
Sbjct: 32  LIAQSLLSQSNSITI---FSPSDTAFAQSGQPSLSLSFDSISCLSTYLPNASNRSRWGTK 91

Query: 105 ISTMLADRSLTVTSSRYFHEISLNRVMISSSPIYDDVRSLFLAPISFL 146
           ISTMLADRSLTVTSSRYFHEISLNRVMISSSPIYDDVRSLFLAPISFL
Sbjct: 92  ISTMLADRSLTVTSSRYFHEISLNRVMISSSPIYDDVRSLFLAPISFL 136

[Close]

BLAST of Csor.00g302380 vs. ExPASy TrEMBL
Match: A0A6J1HVX4 (LOW QUALITY PROTEIN: putative fasciclin-like arabinogalactan protein 20 OS=Cucurbita maxima OX=3661 GN=LOC111467360 PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.28e-13
Identity = 38/39 (97.44%), Postives = 38/39 (97.44%), Query Frame = 0


Query: 96  GTKISTMLADRSLTVTSSRYFHEISLNRVMISSSPIYDD 134
           GTKI TMLADRSLTVTSSRYFHEISLNRVMISSSPIYDD
Sbjct: 40  GTKIPTMLADRSLTVTSSRYFHEISLNRVMISSSPIYDD 78

[Close]

BLAST of Csor.00g302380 vs. ExPASy TrEMBL
Match: A0A6J1J2F0 (putative fasciclin-like arabinogalactan protein 20 OS=Cucurbita maxima OX=3661 GN=LOC111482042 PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.32e-05
Identity = 28/39 (71.79%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 96  GTKISTMLADRSLTVTSSRYFHEISLNRVMISSSPIYDD 134
           GTKI TMLA RSLTVTSS+   E+SLN V IS+SP+YDD
Sbjct: 100 GTKIPTMLAGRSLTVTSSQSDSEVSLNGVKISNSPLYDD 138

[Close]

BLAST of Csor.00g302380 vs. ExPASy TrEMBL
Match: A0A6J1H1S8 (putative fasciclin-like arabinogalactan protein 20 OS=Cucurbita moschata OX=3662 GN=LOC111458798 PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.32e-05
Identity = 28/39 (71.79%), Postives = 32/39 (82.05%), Query Frame = 0


Query: 96  GTKISTMLADRSLTVTSSRYFHEISLNRVMISSSPIYDD 134
           GTKI TMLA RSLTVTSSR   ++SLN V IS+SP+YDD
Sbjct: 100 GTKIPTMLAGRSLTVTSSRSDSKVSLNGVKISNSPLYDD 138

[Close]

BLAST of Csor.00g302380 vs. ExPASy TrEMBL
Match: A0A6J1DAK1 (putative fasciclin-like arabinogalactan protein 20 OS=Momordica charantia OX=3673 GN=LOC111018700 PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 4.11e-05
Identity = 48/98 (48.98%), Postives = 55/98 (56.12%), Query Frame = 0


Query: 45  ILALSIQFNHNLLTFRYCFRPIRSAF------SLSLFFDSISCLSTYLPNASNRS-RWGT 104
           ++A S+  + N LT    F P  +AF      SLSL       L  YL   S +S   GT
Sbjct: 47  LIAESLLSHSNSLTI---FSPSDAAFAQSGQPSLSLL--QFHFLPLYLSPESLKSLASGT 106

Query: 105 KISTMLADRSLTVTSS-RYFHEISLNRVMISSSPIYDD 134
           KI TML  RSLTVTSS R   EISLNRV I+SSP YDD
Sbjct: 107 KIPTMLPGRSLTVTSSSRSDSEISLNRVKINSSPFYDD 139

The following BLAST results are available for this feature:

BLAST of Csor.00g302380 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g302380 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6573921.1	5.73e-100	100.00	hypothetical protein SDJN03_27808, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022945764.1	2.19e-40	76.85	LOW QUALITY PROTEIN: putative fasciclin-like arabinogalactan protein 20 [Cucurbi...	[more]
XP_022967990.1	2.64e-13	97.44	LOW QUALITY PROTEIN: putative fasciclin-like arabinogalactan protein 20, partial...	[more]
KAG7032046.1	4.80e-05	71.79	putative fasciclin-like arabinogalactan protein 20, partial [Cucurbita argyrospe...	[more]
XP_022983481.1	4.80e-05	71.79	putative fasciclin-like arabinogalactan protein 20 [Cucurbita maxima]	[more]

BLAST of Csor.00g302380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G1W2	1.06e-40	76.85	LOW QUALITY PROTEIN: putative fasciclin-like arabinogalactan protein 20 OS=Cucur...	[more]
A0A6J1HVX4	1.28e-13	97.44	LOW QUALITY PROTEIN: putative fasciclin-like arabinogalactan protein 20 OS=Cucur...	[more]
A0A6J1J2F0	2.32e-05	71.79	putative fasciclin-like arabinogalactan protein 20 OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1H1S8	2.32e-05	71.79	putative fasciclin-like arabinogalactan protein 20 OS=Cucurbita moschata OX=3662...	[more]
A0A6J1DAK1	4.11e-05	48.98	putative fasciclin-like arabinogalactan protein 20 OS=Momordica charantia OX=367...	[more]

BLAST of Csor.00g302380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g302380.m01	Csor.00g302380.m01	mRNA