Csor.00g231140 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g231140
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Descriptionactivating signal cointegrator 1 complex subunit 1
LocationCsor_Chr08: 4492079 .. 4494846 (-)
RNA-Seq ExpressionCsor.00g231140
SyntenyCsor.00g231140
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGAATGATCTGTGCAGGTCCGGTCGCGACCAGGCAGGGGTTGCGAATGATAGTTTGCAGGTCTCTTTTCAGGTATGATTCATAAAAATGAAAAACTCTGTTTGGATTCCGAGAAAAATGCTCTACAATTCTTGTAATTCTACAAATTTCTGAGCTTATCGCTTTCGTAACAATGCTCGATGTTTGGCTCCATTTTCATCTTTTGAAACGGGATATAACCTAACATTAGTGGATGTTTTGATCAATCAAATAGTTCGAATTCAATCGATTGAGACTGAGAGGAAGTTTTGATCGATGTTACTTGAAAAATTATCAGTTAATCAGAGATATCTAAGCTCAATCCATGGATTGAAAGTTTCGCTCTCTTTATAAGATTCTCTGTTTGCCTGTATTTAATCTGCTGTGCTGCTTTTGTAGAGTCGACCGTCTCTTGAAATGTACAAGTCCGTATATGTCATATAGCAGCTCGTAATCTAGCTCTGAAGCTCATTATATTAACGATTAATTTGAAGTTGGAATGATTTTCTATTAAAAATATGAACGAATTATTGAATATACCATAACTTATCTACTTTGAGTTCAGTTGTTTAGTCGTGATTTAACAATAGATTATCTTCAAGTGAGAGGAAGGGTAGGTCAAGGATATGATTAGATATGCCTTACTTATCAGCTTAAGCTTTAGAGTTGAATAGTAATTTAACACGATCTGAGCCTGAATTTGGATGTTGAAATGATGTTCTTAGTAATAAACTGGTGGTGGACTAGCTTCTAATCCTTATAAAACTGAGTTCTATTCCAATGCGTCAGGGACTCTATGCTGATGACGGTTGGAGCCTGAAGGCGAATATGACTGGTAAAAAGGAATTCTGGAGTGCTGCTGACCAGAAGAAAAAGCCCAAAACAGTCAGCCAAACATGGAGACCTGTGTACATGCACGCCAGCCCTTCTGAGGGTATGTGGAATTTATATTACAATAGCATATAACTGTAGCCGTGCAGTTTGGGAATTGACAAATCAATATTTATAACCTAAACATTTCATCTAATGGTACTTATGTTTAAGTTGTGGAACAAGGAGTGAGTTGAGGCTGCTTCTGAAGTTCTGAGAGTGATTATACTTACTAACTGGACACTTGTTGTGAGATCCTACCTCGATTGGAGAGGGGAACGAGTGCTAGCGAGGATGCTAGGCCCTGAGTGTCAGGGGGTGGATTGTGAGATCCTATATCGGTTGAGGAGGAGAACGAATCATTCTTTATAAGGGTGTGGAGACCTCTCTCTAGCAAACGCATTTTAAAAACCTTGAGGCCCTAATCATGAGTTCATGTTTTTTTTTTGTAGGATATTTGTATTAAAAGTAGAAAGAAAACTGTAACAGCCCAAGCCTACTGCTAGCAGATATTGTCCTCTTTGAGCTTTCCTCATGTATTTCTTTTTTTTTTTGGTAGGATATTTGTATTAAAATAGAAAGAAAACTATAACAGCCCAAGCCTACTGCTAGCAGATAGAGCTTTCCCTTTCAGGCTTCCCTTCAAGGTTTTTAAAACGTGTCTACTAGGGAGAGGTTTCCACACTCTTATAAAGAATGTTTCGTTCCCTTCTCCAACCGAGGTGAGATATCTCACATTTGTAGAGCTTGTATGTGATGACACATCTTCTTTGTGAGGTATCTCCTCTAAAATAATGGATGCATTGGATAATAGGCCAATACTAATTAAGCTCAAGGGGTTGGTGAGTTCTGTTATATTCAAGCATCAAATTTTCTACATAGATACCATTTGAATCATAACTGCAGCCCACCAAGGATTAATACAGTCGCATTTGATTAGAAGTATCTCTATTTTGGTTTGAATCTTGTCACTTTCAACAACTTACCAAATTTACAGAAAGTGGTGTTTTTAATGATGAGATTGAATAATTTGTTTCCAAACTTTGTTTGCAAGCATTATCTTGGGAAAGTAACTTGAAGAACACTCATCTACGTAGTTTGGAAGTTCATTTTTTTTTTTATTCCCAATAATGTCTGTGTGATATGAGGATTGTATGAGAGGTTCCTTTGCCAAAGCCCGCGTTCTCTATGCTCCTGTGGAAGAAATTGGCGATGTCAGAACACTGTTACGAGCCTGTCATATTCATTTTATAGATTCATCTCAAACATATCCTGCAGAAAAAAATTATTCCATCTGTTTCTTTTTGGTTCAAGTTCTTAAGATAACCAAACATTTTTCACTTCTAAATTTCCTGAGCTTTTAAAGAAGTCATCATTGATGCATTTACAGAAGCTGGACTTGTTCTGGAGAAAGATGCAAAACAGAAGTTAAAGGTATGTTAACAACTTCTAATACATTTCATTCCGAACTCAACCATCAAGGATCAAATATCAGAATGTTTTGTTTGTTACTTCGCAATTTGATTCGATAAATATCTTCGGAATGATTTTCTCATTATCAATATCAATATTTAGTTGCCTGCTGTTAGGAACAACGAACCTCCACATTAGTATAATATTGCCCACTTTAAGTATAAACTCCTGTGGCTTTACTTTTGGTTTTTCCAAAAAGTTTTATACCAATACAAATAATGTCTCCTACTTATATATTCGTGATCTTCCCTTGCTACTGTTATAAATGCATCACCTAGAAAAATGTACATGATTTGGTTCGTTTTTTCTTCAATATGCTCATCTTTTCATGTACTTTCTAGTTCCTTCCATGTGTGAATCTCTGTTTACAATCCTGAATTGTTTGATTTCACTGTCAGGGCTGA

mRNA sequence

ATGCTGAATGATCTGTGCAGGTCCGGTCGCGACCAGGCAGGGGTTGCGAATGATAGTTTGCAGGTCTCTTTTCAGGGACTCTATGCTGATGACGGTTGGAGCCTGAAGGCGAATATGACTGGTAAAAAGGAATTCTGGAGTGCTGCTGACCAGAAGAAAAAGCCCAAAACAGTCAGCCAAACATGGAGACCTGTGTACATGCACGCCAGCCCTTCTGAGGAAGCTGGACTTGTTCTGGAGAAAGATGCAAAACAGAAGTTAAAGGGCTGA

Coding sequence (CDS)

ATGCTGAATGATCTGTGCAGGTCCGGTCGCGACCAGGCAGGGGTTGCGAATGATAGTTTGCAGGTCTCTTTTCAGGGACTCTATGCTGATGACGGTTGGAGCCTGAAGGCGAATATGACTGGTAAAAAGGAATTCTGGAGTGCTGCTGACCAGAAGAAAAAGCCCAAAACAGTCAGCCAAACATGGAGACCTGTGTACATGCACGCCAGCCCTTCTGAGGAAGCTGGACTTGTTCTGGAGAAAGATGCAAAACAGAAGTTAAAGGGCTGA

Protein sequence

MLNDLCRSGRDQAGVANDSLQVSFQGLYADDGWSLKANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHASPSEEAGLVLEKDAKQKLKG
Homology
[Close]
BLAST of Csor.00g231140 vs. NCBI nr
Match: KAG6593476.1 (hypothetical protein SDJN03_12952, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 182 bits (463), Expect = 4.75e-58
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0 

Query: 1  MLNDLCRSGRDQAGVANDSLQVSFQGLYADDGWSLKANMTGKKEFWSAADQKKKPKTVSQ 60
          MLNDLCRSGRDQAGVANDSLQVSFQGLYADDGWSLKANMTGKKEFWSAADQKKKPKTVSQ
Sbjct: 1  MLNDLCRSGRDQAGVANDSLQVSFQGLYADDGWSLKANMTGKKEFWSAADQKKKPKTVSQ 60

Query: 61 TWRPVYMHASPSEEAGLVLEKDAKQKLKG 89
          TWRPVYMHASPSEEAGLVLEKDAKQKLKG
Sbjct: 61 TWRPVYMHASPSEEAGLVLEKDAKQKLKG 89

[Close]
BLAST of Csor.00g231140 vs. NCBI nr
Match: KAG7025820.1 (hypothetical protein SDJN02_12318 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 154 bits (388), Expect = 1.10e-46
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 

Query: 1  MLNDLCRSGRDQAGVANDSLQVSFQGLYADDGWSLKANMTGKKEFWSAADQKKKPKTVSQ 60
          MLNDLCRSGRDQAGVANDSLQVSFQGLYADDGWSLKANMTGKKEFWSAADQKKKPKTVSQ
Sbjct: 1  MLNDLCRSGRDQAGVANDSLQVSFQGLYADDGWSLKANMTGKKEFWSAADQKKKPKTVSQ 60

Query: 61 TWRPVYMHASPSE 73
          TWRPVYMHASPSE
Sbjct: 61 TWRPVYMHASPSE 73

[Close]
BLAST of Csor.00g231140 vs. NCBI nr
Match: XP_022149236.1 (uncharacterized protein LOC111017681 isoform X3 [Momordica charantia])

HSP 1 Score: 99.0 bits (245), Expect = 7.57e-22
Identity = 54/84 (64.29%), Postives = 60/84 (71.43%), Query Frame = 0 

Query: 6  CRSGRDQAGVANDSLQVSFQGLYADDGWSLKANMTGKKEFWSAADQKKKPKTVSQTWRPV 65
          C    D+AG+ANDSLQVSFQG YA +G SL  NMTG+KEF SAADQKKK KT+SQ WRPV
Sbjct: 3  CAVPVDKAGIANDSLQVSFQGHYAYNGLSLYTNMTGRKEFRSAADQKKKRKTISQAWRPV 62

Query: 66 YMHASPSEEA----GLVLEKDAKQ 85
            HASPSE+     G V  KD  Q
Sbjct: 63 CTHASPSEDLSVKDGRVESKDGNQ 86

[Close]
BLAST of Csor.00g231140 vs. NCBI nr
Match: XP_022954065.1 (uncharacterized protein LOC111456441 isoform X2 [Cucurbita moschata])

HSP 1 Score: 98.2 bits (243), Expect = 1.44e-21
Identity = 50/72 (69.44%), Postives = 57/72 (79.17%), Query Frame = 0 

Query: 11 DQAGVANDSLQVSFQGLYADDGWSLKANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHAS 70
          D+AGVANDSLQVSFQGLY  +GWSL ANM GKKEF   ADQKKK KT++Q WRPV   AS
Sbjct: 8  DKAGVANDSLQVSFQGLYTYNGWSLNANMAGKKEFRRVADQKKKRKTITQAWRPVCTQAS 67

Query: 71 PSEEAGLVLEKD 82
          PSE+  LV++ D
Sbjct: 68 PSED--LVVKND 77

[Close]
BLAST of Csor.00g231140 vs. NCBI nr
Match: XP_023549271.1 (activating signal cointegrator 1 complex subunit 1-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 94.7 bits (234), Expect = 2.50e-20
Identity = 46/64 (71.88%), Postives = 51/64 (79.69%), Query Frame = 0 

Query: 11 DQAGVANDSLQVSFQGLYADDGWSLKANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHAS 70
          D+AGVANDSLQVSFQGLY  +GWSL ANM  KKEF   ADQKKK KT++Q WRPV   AS
Sbjct: 8  DKAGVANDSLQVSFQGLYTYNGWSLNANMASKKEFRRVADQKKKRKTITQAWRPVCTQAS 67

Query: 71 PSEE 74
          PSE+
Sbjct: 68 PSED 71

[Close]
BLAST of Csor.00g231140 vs. ExPASy TrEMBL
Match: A0A6J1D7S4 (uncharacterized protein LOC111017681 isoform X3 OS=Momordica charantia OX=3673 GN=LOC111017681 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.67e-22
Identity = 54/84 (64.29%), Postives = 60/84 (71.43%), Query Frame = 0 

Query: 6  CRSGRDQAGVANDSLQVSFQGLYADDGWSLKANMTGKKEFWSAADQKKKPKTVSQTWRPV 65
          C    D+AG+ANDSLQVSFQG YA +G SL  NMTG+KEF SAADQKKK KT+SQ WRPV
Sbjct: 3  CAVPVDKAGIANDSLQVSFQGHYAYNGLSLYTNMTGRKEFRSAADQKKKRKTISQAWRPV 62

Query: 66 YMHASPSEEA----GLVLEKDAKQ 85
            HASPSE+     G V  KD  Q
Sbjct: 63 CTHASPSEDLSVKDGRVESKDGNQ 86

[Close]
BLAST of Csor.00g231140 vs. ExPASy TrEMBL
Match: A0A6J1GRE7 (uncharacterized protein LOC111456441 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111456441 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 6.95e-22
Identity = 50/72 (69.44%), Postives = 57/72 (79.17%), Query Frame = 0 

Query: 11 DQAGVANDSLQVSFQGLYADDGWSLKANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHAS 70
          D+AGVANDSLQVSFQGLY  +GWSL ANM GKKEF   ADQKKK KT++Q WRPV   AS
Sbjct: 8  DKAGVANDSLQVSFQGLYTYNGWSLNANMAGKKEFRRVADQKKKRKTITQAWRPVCTQAS 67

Query: 71 PSEEAGLVLEKD 82
          PSE+  LV++ D
Sbjct: 68 PSED--LVVKND 77

[Close]
BLAST of Csor.00g231140 vs. ExPASy TrEMBL
Match: A0A0A0K963 (KH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G447090 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.20e-14
Identity = 44/89 (49.44%), Postives = 50/89 (56.18%), Query Frame = 0 

Query: 2   LNDLCRSGRDQAGVANDSLQVSFQ----------------GLYADDGWSLKANMTGKKEF 61
           LN LC SGR    +     +  F+                GLYA +GW L ANMTGK EF
Sbjct: 44  LNALCSSGRQSQSLRMIVCRSLFRVDRFLKYTAPFVLHQTGLYAYNGWRLNANMTGKTEF 103

Query: 62  WSAADQKKKPKTVSQTWRPVYMHASPSEE 74
            SAADQKKK KT+SQ WRPV  HA PSE+
Sbjct: 104 RSAADQKKKRKTISQAWRPVCTHACPSED 132

[Close]
BLAST of Csor.00g231140 vs. ExPASy TrEMBL
Match: A0A6J1D6F0 (uncharacterized protein LOC111017681 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111017681 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.33e-12
Identity = 40/61 (65.57%), Postives = 44/61 (72.13%), Query Frame = 0 

Query: 26 GLYADDGWSLKANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHASPSE-EAGLVLEKDAK 85
          G YA +G SL  NMTG+KEF SAADQKKK KT+SQ WRPV  HASPSE + G V  KD  
Sbjct: 26 GHYAYNGLSLYTNMTGRKEFRSAADQKKKRKTISQAWRPVCTHASPSEVKDGRVESKDGN 85

[Close]
BLAST of Csor.00g231140 vs. ExPASy TrEMBL
Match: A0A6J1D7P1 (uncharacterized protein LOC111017681 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111017681 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.82e-12
Identity = 40/64 (62.50%), Postives = 44/64 (68.75%), Query Frame = 0 

Query: 26 GLYADDGWSLKANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHASPSEEA----GLVLEK 85
          G YA +G SL  NMTG+KEF SAADQKKK KT+SQ WRPV  HASPSE+     G V  K
Sbjct: 26 GHYAYNGLSLYTNMTGRKEFRSAADQKKKRKTISQAWRPVCTHASPSEDLSVKDGRVESK 85

The following BLAST results are available for this feature:
BLAST of Csor.00g231140 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g231140 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6593476.14.75e-58100.00hypothetical protein SDJN03_12952, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7025820.11.10e-46100.00hypothetical protein SDJN02_12318 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022149236.17.57e-2264.29uncharacterized protein LOC111017681 isoform X3 [Momordica charantia][more]
XP_022954065.11.44e-2169.44uncharacterized protein LOC111456441 isoform X2 [Cucurbita moschata][more]
XP_023549271.12.50e-2071.88activating signal cointegrator 1 complex subunit 1-like isoform X2 [Cucurbita pe... [more]
BLAST of Csor.00g231140 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1D7S43.67e-2264.29uncharacterized protein LOC111017681 isoform X3 OS=Momordica charantia OX=3673 G... [more]
A0A6J1GRE76.95e-2269.44uncharacterized protein LOC111456441 isoform X2 OS=Cucurbita moschata OX=3662 GN... [more]
A0A0A0K9633.20e-1449.44KH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G447090 PE=4 SV=... [more]
A0A6J1D6F01.33e-1265.57uncharacterized protein LOC111017681 isoform X2 OS=Momordica charantia OX=3673 G... [more]
A0A6J1D7P11.82e-1262.50uncharacterized protein LOC111017681 isoform X1 OS=Momordica charantia OX=3673 G... [more]
BLAST of Csor.00g231140 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g231140.m01Csor.00g231140.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003723 RNA binding