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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. ATGGTTGCTGCTCTTCCATTCGACTTATCTTGTGCCTAAAACATCCGAAATAATAATAATAATAATTAAAAATAAAAATTTTAGGGTTTATAATTCCATTTAACCTTTGAGTTATTTATTTAATTATTTTAAAAAAATAAAACATCGGAAATAATAATAATAATAATAATACTTAAAAATAAAATATTTAGGGTTTATAAATCAATTTAACCTTCGAGTTATTTATTTAATTATTTTAAAAAAATTATGTTCATTAATAATTACGGCTGGATTTTAAATTACTCTATTTTTGGTTGGTCCACTTGACCGGACAAGAAAGTTAGTTTTTCAAAAATTCAACCAAAAAATCAACTTTATATTTTTTTTAATTTTTTAAATTTTAATTTAATAAGCGGAAACAAATTCAAAATTTATGAGTTGATTTTTCTACATTTTAAATTAAAAATTAAGAAACACCCTTTTGTTTATATAATTTTTATAATTACTAAAATACCAAAAAATTATATAAAAAAATAAAGAAAAAATAAAAAAGTTATCCTCTCCTTAATTAAAAAGGCAAAGGTAGAAATAACCTAAAATTTAGGATTAATTTTTAAGTTTTTATTTTTTCTGTTATTTAATCGAATTTCGGACTGAAAATTTTCCTTCTATATTCACGTGAACAGGGAAGGAGGCCCTCTCTTCGTCTACTTCACTTTTCTGCCTAAACACAAATTTCCCAGCCTTCGGGTCAGTTAATGATCAATTTCAATCCAATCGTTCCTCAAATTCATCAACAGATCTTCAATCTGGTCTTGCGGAATCCGATCGTCGTCGAGTTTCGCAGTCGAAGCGGAAGATTTCGATTCTGAGATTCAAAGTTGTTCTAAGAGCGTTCGGGTAAGTTAATGATTCGTTTTGATCGGTTAAAGAATATTAGTTACTTGCTGTTTGTTGTTTTGGATACTGTATTTGCTTGTGTTTTCACTTTTGATTGGGATTGTTCTTCGCGGGCTATGAGGATCAGGAGCTAGGGTTTTGTTTCTCCTTCGATATGGTTTCGCTTTTATTACGCGGATGTTTATGTGCTCGTTTTTCCTTGTTGCTCAACGTTTTGATATGCGGTCTAGTGATTTTTACCTGCGTCATCAAAATTACGGAAATATTGGAGTGTGGTGTTTGTTAATCGTCGTCTGGAGCCTGGTCGTTGTAGTTGTTATTTTTATTTAATATTGGCCGTTTTGATTTGGTCGGTTAACTGTTTTGAGGGTTTGATCGATATTTTATTGTGACAAAGACACTTGCACTAGCAGCTCGGTGTAAGAGATTTTTGTGGACTATTGGTTAAATTAGTTCGTCCATGTGAGCTTTTTGTTATTGTCTTTGCTACAAGTTGGCACTGTTTTTGTGTCTTCATGGTCTATCAATGGAAGGTACCCGAAAAATTTAGGGTCTGCTGAACTGTGCTTATATATATATATATATATATATATCTTCTTTTTTATCTTTATAAATGTGGGATTAACGATGTTATGTTTAACTAGTGCAAAAGTTGGTGGGTGTTTGAATGGAGAAGATTTCCATTTATCCTTTGGGATATCCCACTTTTTTCTGGATTATTTGAACGTTAATTTTTTTTCTTTCAGGGTTTATCTGCTAAATTCAGTTTTCTACTTTTACCTCCTTGTTTAAAATGCTTGGATCCTTGTTTTTCTAACGATGATTCATTCTACGCAGCCTGAGTACTCTGTGA mRNA sequence ATGGTTGCTGCTCTTCCATTCGACTTATCTTGGAAGGAGGCCCTCTCTTCGTCTACTTCACTTTTCTGCCTAAACACAAATTTCCCAGCCTTCGGGTCAGTTAATGATCAATTTCAATCCAATCGTTCCTCAAATTCATCAACAGATCTTCAATCTGGTCTTGCGGAATCCGATCGTCGTCGAGTTTCGCAGTCGAAGCGGAAGATTTCGATTCTGAGATTCAAAGTTGTTCTAAGAGCGTTCGGCCTGAGTACTCTGTGA Coding sequence (CDS) ATGGTTGCTGCTCTTCCATTCGACTTATCTTGGAAGGAGGCCCTCTCTTCGTCTACTTCACTTTTCTGCCTAAACACAAATTTCCCAGCCTTCGGGTCAGTTAATGATCAATTTCAATCCAATCGTTCCTCAAATTCATCAACAGATCTTCAATCTGGTCTTGCGGAATCCGATCGTCGTCGAGTTTCGCAGTCGAAGCGGAAGATTTCGATTCTGAGATTCAAAGTTGTTCTAAGAGCGTTCGGCCTGAGTACTCTGTGA Protein sequence MVAALPFDLSWKEALSSSTSLFCLNTNFPAFGSVNDQFQSNRSSNSSTDLQSGLAESDRRRVSQSKRKISILRFKVVLRAFGLSTL
Homology
BLAST of Csor.00g004750 vs. NCBI nr
Match: KAG6593316.1 (hypothetical protein SDJN03_12792, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 161 bits (408), Expect = 9.46e-50 Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0
Query: 1 MVAALPFDLSWKEALSSSTSLFCLNTNFPAFGSVNDQFQSNRSSNSSTDLQSGLAESDRR 60
MVAALPFDLSWKEALSSSTSLFCLNTNFPAFGSVNDQFQSNRSSNSSTDLQSGLAESDRR
Sbjct: 1 MVAALPFDLSWKEALSSSTSLFCLNTNFPAFGSVNDQFQSNRSSNSSTDLQSGLAESDRR 60
Query: 61 RVSQSKRKISILRFKVVLRAFGLSTL 86
RVSQSKRKISILRFKVVLRAFGLSTL
Sbjct: 61 RVSQSKRKISILRFKVVLRAFGLSTL 86
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
|---|
| KAG6593316.1 | 9.46e-50 | 100.00 | hypothetical protein SDJN03_12792, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 39..53 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 39..65 |
Relationships
The following mRNA feature(s) are a part of this gene:
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