Carg18616 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg18616
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	60S ribosomal protein L28-2-like
Location	Carg_Chr12: 11847519 .. 11849581 (-)
RNA-Seq Expression	Carg18616
Synteny	Carg18616

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGACTCAACCTGCGCACTCTCTTCGACTTGTTGCAGCGCAGGTCCGCTTCTTCTTCCACCTTTCAGATCTTCTTTTTTCTTTCAATTTCATCATCTTCAATCTGGTTTTTTCCATTTTTGTGTATCTTATATCAACTGCATCCTTACTTTTGTTGCTGATTTCCGTTACTTTTGTAGATGGCGAACGTTCCGGGGCAGTTGGCGTGGGAAATCGTTAAGAAAAACAGCTCTTTCCTCGTTAAAGAGTTTGGAAGAGGCAATGCAGGTGTTCAATTCAGCAAAGAGCCAAACAACCTCTACAATCTCAACTCCTACAAGCATTCCGGTAAGAAAAACATCTTTTACTTGTTAAGTATAATCGTTTTGAACTTGAGGAAAATATGAGGAATCAGCTGCCATTTTTGTTCTGCACATTTCCTTCCGGAATGGTTATTGAATCTTGTTTTAGTTCTTAGAAAGTGTTGGGAGGATTTATCTTATTTTATTTGCGTTGTGGAATGTTTTTGGGGACTCTTTCAGGCTTAGCGAACCGTAAGACAGTGACCATTCAGGAAGGGGGCAAGGATTTGTCAATATTGATAGCGACAACAAAGACGAAGAAGCAGAATAAACCCGCGAGTTTGCTCCACAAGTCAATTACGAGGAAGGAATTTCCTCGCATGGTTAAGACTGTGACTAATCAGGTAACTCTCCACTTCATTTTTTAATTGATGCCCACTCAGATGTAATTCAATATTGGATGTTTGCTGATTCTGCCTGCATTTATCATTGGTCTTGCTTGGTTAATCAGGGAATTATTATGCTATTAAGAAGCTGCCAATAATGATTTTCAGTTTTGTAGTTTTTTAGAGATCGTAATTGAACTGAATTGTACTGTTACAGTGACAAGAAGCTAACATGTTAGAAGGGTCACTTTTGTAGTTGTATCTTTGTTATGCCTGTCTTCTAAGCTCAATTTTCCATCGTTTCAAAATTCAAAAGTTTGAATCTCTCATTTTCGCTTGTTGAACTAAAGACAAGAATGTTTATAACTATTGGTGCGATGATAACCTGTTAACATCTAAGGAGGTCCTTTTTGTAGTGGCATCTTCAATGAAATCTGTTTGTTACACTTGGCTTCTGAGCATCAATTTAAATTTAGTAGATATGGTGTTGGATGGTAGAACTTGTTGAAAAGATGAAAGAACTTGTTGGATGGTATGCGTCAGATTAGATTTTGCTAAATCAAATCTGTTTTTTCTGAATAATAATGAATAACCAAACTCTTATTGAGGAGTGAACTTGTTGGATGGTATGCAGGTGGCTGACAATTACTACCGCCCAGACTTGAAGAACGCTGCCCTTGCAAAGCTAAGCGCAGTTCATAGGAGCCTTAAGGTTGCCAGGTCTGGTGTGAAGAAGAGGAACAGGCAGGCCATTAAGACACGCGGTAGGAAGTGAATCAATGGCTTAGAAGGGTTTTTTTTCTTCCACTACTACAGCTTAAGTATAAAACATTGAATTGATGATATCAAGACTAAAAAATTTGTACCCTCCAGAGCTCCTTGAAGGTTTATGATGATCGAATTCTTTTACTCTTTACAGCATCCAATAATACCCTTTGGCTGACTCCTCCATACCCGTAATAGTAAAATCTTAGAATGACTTTTCACATACCAAATAATCTCTTCCACTAAGCATGTAGTGCTTTAAAAATAATTGTTCTAATCCTGATGTTTCAATAACTAGAACAACTGCAATTAAATATGATCGTCTCCTTCCATTAAACAGATCAAAACTACAACCTGATCTCATCTTGAAAACAAAAACAAAGACAATTCAATCATCTTCCTCAATGACTTTGGTCCCGAGTCCCTTCAGTCCGTCAGCAGAGATTTCTGCAACGGTAACGAGGGAGTACAACTCCTCCTTGGCATCTTCATCATCGTTCCTCTTCCGAGCAATGCGAACTCTGATTCTTCTAGGCACACTCCTGATTCCCCTGCTCCAGATATGCTTGTTCAGCTTCACATCCACTCTCACGTCCTTTGTTCCCATAGCCTTCTCAGCAAATCTCCTGATCT

mRNA sequence

TGACTCAACCTGCGCACTCTCTTCGACTTGTTGCAGCGCAGATGGCGAACGTTCCGGGGCAGTTGGCGTGGGAAATCGTTAAGAAAAACAGCTCTTTCCTCGTTAAAGAGTTTGGAAGAGGCAATGCAGGTGTTCAATTCAGCAAAGAGCCAAACAACCTCTACAATCTCAACTCCTACAAGCATTCCGGCTTAGCGAACCGTAAGACAGTGACCATTCAGGAAGGGGGCAAGGATTTGTCAATATTGATAGCGACAACAAAGACGAAGAAGCAGAATAAACCCGCGAGTTTGCTCCACAAGTCAATTACGAGGAAGGAATTTCCTCGCATGGTTAAGACTGTGACTAATCAGGTGGCTGACAATTACTACCGCCCAGACTTGAAGAACGCTGCCCTTGCAAAGCTAAGCGCAGTTCATAGGAGCCTTAAGGTTGCCAGGTCTGGTGTGAAGAAGAGGAACAGGCAGGCCATTAAGACACGCGGTAGGAAGTGAATCAATGGCTTAGAAGGGTTTTTTTTCTTCCACTACTACAGCTTAAGTATAAAACATTGAATTGATGATATCAAGACTAAAAAATTTGTACCCTCCAGAGCTCCTTGAAGGTTTATGATGATCGAATTCTTTTACTCTTTACAGCATCCAATAATACCCTTTGGCTGACTCCTCCATACCCGTAATAGTAAAATCTTAGAATGACTTTTCACATACCAAATAATCTCTTCCACTAAGCATGTAGTGCTTTAAAAATAATTGTTCTAATCCTGATGTTTCAATAACTAGAACAACTGCAATTAAATATGATCGTCTCCTTCCATTAAACAGATCAAAACTACAACCTGATCTCATCTTGAAAACAAAAACAAAGACAATTCAATCATCTTCCTCAATGACTTTGGTCCCGAGTCCCTTCAGTCCGTCAGCAGAGATTTCTGCAACGGTAACGAGGGAGTACAACTCCTCCTTGGCATCTTCATCATCGTTCCTCTTCCGAGCAATGCGAACTCTGATTCTTCTAGGCACACTCCTGATTCCCCTGCTCCAGATATGCTTGTTCAGCTTCACATCCACTCTCACGTCCTTTGTTCCCATAGCCTTCTCAGCAAATCTCCTGATCT

Coding sequence (CDS)

ATGGCGAACGTTCCGGGGCAGTTGGCGTGGGAAATCGTTAAGAAAAACAGCTCTTTCCTCGTTAAAGAGTTTGGAAGAGGCAATGCAGGTGTTCAATTCAGCAAAGAGCCAAACAACCTCTACAATCTCAACTCCTACAAGCATTCCGGCTTAGCGAACCGTAAGACAGTGACCATTCAGGAAGGGGGCAAGGATTTGTCAATATTGATAGCGACAACAAAGACGAAGAAGCAGAATAAACCCGCGAGTTTGCTCCACAAGTCAATTACGAGGAAGGAATTTCCTCGCATGGTTAAGACTGTGACTAATCAGGTGGCTGACAATTACTACCGCCCAGACTTGAAGAACGCTGCCCTTGCAAAGCTAAGCGCAGTTCATAGGAGCCTTAAGGTTGCCAGGTCTGGTGTGAAGAAGAGGAACAGGCAGGCCATTAAGACACGCGGTAGGAAGTGA

Protein sequence

MANVPGQLAWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQEGGKDLSILIATTKTKKQNKPASLLHKSITRKEFPRMVKTVTNQVADNYYRPDLKNAALAKLSAVHRSLKVARSGVKKRNRQAIKTRGRK

Homology

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BLAST of Carg18616 vs. NCBI nr
Match: KAG7021324.1 (60S ribosomal protein L28-1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 288.9 bits (738), Expect = 2.5e-74
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MANVPGQLAWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60
           MANVPGQLAWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ
Sbjct: 1   MANVPGQLAWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60

Query: 61  EGGKDLSILIATTKTKKQNKPASLLHKSITRKEFPRMVKTVTNQVADNYYRPDLKNAALA 120
           EGGKDLSILIATTKTKKQNKPASLLHKSITRKEFPRMVKTVTNQVADNYYRPDLKNAALA
Sbjct: 61  EGGKDLSILIATTKTKKQNKPASLLHKSITRKEFPRMVKTVTNQVADNYYRPDLKNAALA 120

Query: 121 KLSAVHRSLKVARSGVKKRNRQAIKTRGRK 151
           KLSAVHRSLKVARSGVKKRNRQAIKTRGRK
Sbjct: 121 KLSAVHRSLKVARSGVKKRNRQAIKTRGRK 150

[Close]

BLAST of Carg18616 vs. NCBI nr
Match: XP_022938097.1 (60S ribosomal protein L28-2-like [Cucurbita moschata])

HSP 1 Score: 285.0 bits (728), Expect = 3.7e-73
Identity = 148/150 (98.67%), Postives = 148/150 (98.67%), Query Frame = 0


Query: 1   MANVPGQLAWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60
           MANVPGQL WEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ
Sbjct: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60

Query: 61  EGGKDLSILIATTKTKKQNKPASLLHKSITRKEFPRMVKTVTNQVADNYYRPDLKNAALA 120
            GGKDLSILIATTKTKKQNKPASLLHKSITRKEFPRMVKTVTNQVADNYYRPDLKNAALA
Sbjct: 61  AGGKDLSILIATTKTKKQNKPASLLHKSITRKEFPRMVKTVTNQVADNYYRPDLKNAALA 120

Query: 121 KLSAVHRSLKVARSGVKKRNRQAIKTRGRK 151
           KLSAVHRSLKVARSGVKKRNRQAIKTRGRK
Sbjct: 121 KLSAVHRSLKVARSGVKKRNRQAIKTRGRK 150

[Close]

BLAST of Carg18616 vs. NCBI nr
Match: KAG6586468.1 (60S ribosomal protein L28-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 283.1 bits (723), Expect = 1.4e-72
Identity = 147/150 (98.00%), Postives = 147/150 (98.00%), Query Frame = 0


Query: 1   MANVPGQLAWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60
           M NVPGQL WEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ
Sbjct: 1   MPNVPGQLVWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60

Query: 61  EGGKDLSILIATTKTKKQNKPASLLHKSITRKEFPRMVKTVTNQVADNYYRPDLKNAALA 120
            GGKDLSILIATTKTKKQNKPASLLHKSITRKEFPRMVKTVTNQVADNYYRPDLKNAALA
Sbjct: 61  AGGKDLSILIATTKTKKQNKPASLLHKSITRKEFPRMVKTVTNQVADNYYRPDLKNAALA 120

Query: 121 KLSAVHRSLKVARSGVKKRNRQAIKTRGRK 151
           KLSAVHRSLKVARSGVKKRNRQAIKTRGRK
Sbjct: 121 KLSAVHRSLKVARSGVKKRNRQAIKTRGRK 150

[Close]

BLAST of Carg18616 vs. NCBI nr
Match: XP_022965993.1 (60S ribosomal protein L28-2-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 277.3 bits (708), Expect = 7.6e-71
Identity = 143/150 (95.33%), Postives = 147/150 (98.00%), Query Frame = 0


Query: 1   MANVPGQLAWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60
           MANVPGQL WEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLY+LNSYKHSGLANRKTVTIQ
Sbjct: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYSLNSYKHSGLANRKTVTIQ 60

Query: 61  EGGKDLSILIATTKTKKQNKPASLLHKSITRKEFPRMVKTVTNQVADNYYRPDLKNAALA 120
            GGKDLS+LIATTKTKKQNKPASLLHKSITRKEFPRM+KTVTNQVADNYYRPDLKNAALA
Sbjct: 61  AGGKDLSMLIATTKTKKQNKPASLLHKSITRKEFPRMLKTVTNQVADNYYRPDLKNAALA 120

Query: 121 KLSAVHRSLKVARSGVKKRNRQAIKTRGRK 151
           KLSAVHRSLKVA+SGVK RNRQAIKTRGRK
Sbjct: 121 KLSAVHRSLKVAKSGVKTRNRQAIKTRGRK 150

[Close]

BLAST of Carg18616 vs. NCBI nr
Match: XP_038889445.1 (60S ribosomal protein L28-1-like [Benincasa hispida])

HSP 1 Score: 269.2 bits (687), Expect = 2.1e-68
Identity = 136/150 (90.67%), Postives = 143/150 (95.33%), Query Frame = 0


Query: 1   MANVPGQLAWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60
           MANVPGQL WEIVKKNSSFL KEFGRGNA +QFSKEPNNLYNLNSYKHSGLAN+KTVTIQ
Sbjct: 1   MANVPGQLVWEIVKKNSSFLFKEFGRGNASIQFSKEPNNLYNLNSYKHSGLANQKTVTIQ 60

Query: 61  EGGKDLSILIATTKTKKQNKPASLLHKSITRKEFPRMVKTVTNQVADNYYRPDLKNAALA 120
            GGKDLS+L+ATTKTKKQNKPASLLHKSI RKEFPRM K VTNQVADNYYRPDLKNAALA
Sbjct: 61  PGGKDLSVLLATTKTKKQNKPASLLHKSIMRKEFPRMAKAVTNQVADNYYRPDLKNAALA 120

Query: 121 KLSAVHRSLKVARSGVKKRNRQAIKTRGRK 151
           KLSAVHRSLKVA+SGVKKRNRQA++TRGRK
Sbjct: 121 KLSAVHRSLKVAKSGVKKRNRQAVRTRGRK 150

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BLAST of Carg18616 vs. ExPASy Swiss-Prot
Match: Q9M0E2 (60S ribosomal protein L28-2 OS=Arabidopsis thaliana OX=3702 GN=RPL28C PE=2 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 3.1e-51
Identity = 101/143 (70.63%), Postives = 119/143 (83.22%), Query Frame = 0


Query: 1   MANVPGQLAWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60
           MA VPGQL WEIVK+N+ FLVK+FGRGNA VQFSKE NNL N+NSYKHSGLAN+KTVTIQ
Sbjct: 1   MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQ 60

Query: 61  EGGKDLSILIATTKTKKQNKPASLLHKSITRKEFPRMVKTVTNQVADNYYRPDLKNAALA 120
             GKD  +++ TTKTK+QNKP   ++KSI +KEF RM K V NQV DNYYRPDLK AALA
Sbjct: 61  AAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALA 120

Query: 121 KLSAVHRSLKVARSGVKKRNRQA 144
           +LSA+ + L+VA+SG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGPKRRNRQA 143

[Close]

BLAST of Carg18616 vs. ExPASy Swiss-Prot
Match: O82204 (60S ribosomal protein L28-1 OS=Arabidopsis thaliana OX=3702 GN=RPL28A PE=1 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 5.4e-51
Identity = 101/143 (70.63%), Postives = 120/143 (83.92%), Query Frame = 0


Query: 1   MANVPGQLAWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60
           MA VPGQL WEIVK N+ FLVK+FGRGN+ VQFSKE NNL N++SYKHSGLAN+KTVTIQ
Sbjct: 1   MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60

Query: 61  EGGKDLSILIATTKTKKQNKPASLLHKSITRKEFPRMVKTVTNQVADNYYRPDLKNAALA 120
              KD ++++ATTKTKKQNKP   ++KSI +KEFPRM K V NQV DNYYRPDLK AALA
Sbjct: 61  AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120

Query: 121 KLSAVHRSLKVARSGVKKRNRQA 144
           +LSA+ + L+VA+SG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA 143

[Close]

BLAST of Carg18616 vs. ExPASy Swiss-Prot
Match: Q962T2 (60S ribosomal protein L28 OS=Spodoptera frugiperda OX=7108 GN=RpL28 PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.9e-12
Identity = 52/143 (36.36%), Postives = 75/143 (52.45%), Query Frame = 0


Query: 8   LAWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQEGGKDLS 67
           L W I++ N++FLVK   + N    FSKEPNN+ NLNSY+++GL  +K V + E      
Sbjct: 5   LNWMIIRNNNAFLVK---KRNIKKPFSKEPNNVTNLNSYRYNGLIQKKAVGVVENPDRKG 64

Query: 68  ILIATTKTKKQNKPASLLHKSITRKEFP----RMVKTVTNQVADNYYRPDLKNAALAKLS 127
             +   K K  NKPA    K+  R++F     R +  V   +  N+YR DL  A L + S
Sbjct: 65  FTVVYKKAKATNKPA----KNAVRRQFKAGARRSLYKVKRLLKANHYRTDLSKATLRRAS 124

Query: 128 AVHRSLKVARSGVKKRNRQAIKT 147
           A+ RS +  ++  KK      KT
Sbjct: 125 AILRSQRPIKA--KKPKAAVAKT 138

[Close]

BLAST of Carg18616 vs. ExPASy Swiss-Prot
Match: O14069 (Probable 60S ribosomal protein L28e OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpl44 PE=1 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.9e-12
Identity = 43/126 (34.13%), Postives = 66/126 (52.38%), Query Frame = 0


Query: 3   NVPGQLAWEIVKKNSSFLVK--EFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 62
           +V   L W++++ N+ FLVK  EFG    G+QF++EP N+   N+ + SGL N K V +Q
Sbjct: 2   SVSNDLIWQVIRDNNRFLVKRPEFG----GIQFNREPVNVSGKNAQRFSGLCNDKAVGVQ 61

Query: 63  EGGKDLSILIATTKTKKQNKPASLLHKSITRKEFPRMV-KTVTNQVADNYYRPDLKNAAL 122
                  +LI  T  K   KPA L  K +      R   K++  ++    YR DL   ++
Sbjct: 62  ANSPRGVVLITKTNPKNAQKPAKLFRKDVIANASSRKTYKSIAGRIGRTGYRDDLVKVSV 121

Query: 123 AKLSAV 126
           A+ SA+
Sbjct: 122 ARASAI 123

[Close]

BLAST of Carg18616 vs. ExPASy Swiss-Prot
Match: Q3T0L7 (60S ribosomal protein L28 OS=Bos taurus OX=9913 GN=RPL28 PE=2 SV=3)

HSP 1 Score: 72.0 bits (175), Expect = 6.4e-12
Identity = 40/123 (32.52%), Postives = 68/123 (55.28%), Query Frame = 0


Query: 8   LAWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQEGGKDLS 67
           L W +V+  SSFL+K   +      +S EPNNL   NS++++GL +RKTV ++       
Sbjct: 5   LQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKG 64

Query: 68  ILIATTKTKKQNKPASLLHKSITRKEFPRMVKTVTNQVADNYYRPDLKNAALAKLSAVHR 127
           +++   +   Q KPA+   ++   K     + ++ + +  N YRPDL+ AA+ + SA+ R
Sbjct: 65  VVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILR 122

Query: 128 SLK 131
           S K
Sbjct: 125 SQK 122

[Close]

BLAST of Carg18616 vs. ExPASy TrEMBL
Match: A0A6J1FD25 (60S ribosomal protein L28-2-like OS=Cucurbita moschata OX=3662 GN=LOC111444289 PE=3 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 1.8e-73
Identity = 148/150 (98.67%), Postives = 148/150 (98.67%), Query Frame = 0


Query: 1   MANVPGQLAWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60
           MANVPGQL WEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ
Sbjct: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60

Query: 61  EGGKDLSILIATTKTKKQNKPASLLHKSITRKEFPRMVKTVTNQVADNYYRPDLKNAALA 120
            GGKDLSILIATTKTKKQNKPASLLHKSITRKEFPRMVKTVTNQVADNYYRPDLKNAALA
Sbjct: 61  AGGKDLSILIATTKTKKQNKPASLLHKSITRKEFPRMVKTVTNQVADNYYRPDLKNAALA 120

Query: 121 KLSAVHRSLKVARSGVKKRNRQAIKTRGRK 151
           KLSAVHRSLKVARSGVKKRNRQAIKTRGRK
Sbjct: 121 KLSAVHRSLKVARSGVKKRNRQAIKTRGRK 150

[Close]

BLAST of Carg18616 vs. ExPASy TrEMBL
Match: A0A6J1HQK6 (60S ribosomal protein L28-2-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111465713 PE=3 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 3.7e-71
Identity = 143/150 (95.33%), Postives = 147/150 (98.00%), Query Frame = 0


Query: 1   MANVPGQLAWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60
           MANVPGQL WEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLY+LNSYKHSGLANRKTVTIQ
Sbjct: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYSLNSYKHSGLANRKTVTIQ 60

Query: 61  EGGKDLSILIATTKTKKQNKPASLLHKSITRKEFPRMVKTVTNQVADNYYRPDLKNAALA 120
            GGKDLS+LIATTKTKKQNKPASLLHKSITRKEFPRM+KTVTNQVADNYYRPDLKNAALA
Sbjct: 61  AGGKDLSMLIATTKTKKQNKPASLLHKSITRKEFPRMLKTVTNQVADNYYRPDLKNAALA 120

Query: 121 KLSAVHRSLKVARSGVKKRNRQAIKTRGRK 151
           KLSAVHRSLKVA+SGVK RNRQAIKTRGRK
Sbjct: 121 KLSAVHRSLKVAKSGVKTRNRQAIKTRGRK 150

[Close]

BLAST of Carg18616 vs. ExPASy TrEMBL
Match: A0A6J1DMI9 (60S ribosomal protein L28-1-like OS=Momordica charantia OX=3673 GN=LOC111021927 PE=3 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 1.5e-67
Identity = 134/150 (89.33%), Postives = 141/150 (94.00%), Query Frame = 0


Query: 1   MANVPGQLAWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60
           MANVPGQL WEIVKKN+SFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ
Sbjct: 1   MANVPGQLVWEIVKKNNSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60

Query: 61  EGGKDLSILIATTKTKKQNKPASLLHKSITRKEFPRMVKTVTNQVADNYYRPDLKNAALA 120
            GGKDLS+L+ATTK KKQNKPASLLH+S+ RKEFPRM K V NQVADNYYRPDLK AALA
Sbjct: 61  PGGKDLSVLLATTKAKKQNKPASLLHRSVMRKEFPRMAKAVINQVADNYYRPDLKKAALA 120

Query: 121 KLSAVHRSLKVARSGVKKRNRQAIKTRGRK 151
           KLS VHRSLKVA+SGVKKRNRQA+KTRGRK
Sbjct: 121 KLSVVHRSLKVAKSGVKKRNRQALKTRGRK 150

[Close]

BLAST of Carg18616 vs. ExPASy TrEMBL
Match: A0A1S3CAX2 (60S ribosomal protein L28-1-like OS=Cucumis melo OX=3656 GN=LOC103498417 PE=3 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 4.7e-66
Identity = 132/150 (88.00%), Postives = 141/150 (94.00%), Query Frame = 0


Query: 1   MANVPGQLAWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60
           MANVPGQL WEIVKKNSSFLVKEFGRGNA VQFSKEPNNLY+LNSYKHSGLAN KTVTIQ
Sbjct: 1   MANVPGQLVWEIVKKNSSFLVKEFGRGNASVQFSKEPNNLYSLNSYKHSGLANLKTVTIQ 60

Query: 61  EGGKDLSILIATTKTKKQNKPASLLHKSITRKEFPRMVKTVTNQVADNYYRPDLKNAALA 120
            GGKDLS+L+AT+KTKKQNKPA+ LHKS+ RKEFPRM K VTNQVADNYYRPDLKNAALA
Sbjct: 61  PGGKDLSVLLATSKTKKQNKPANSLHKSVMRKEFPRMAKAVTNQVADNYYRPDLKNAALA 120

Query: 121 KLSAVHRSLKVARSGVKKRNRQAIKTRGRK 151
           KLSAVHRSLKVA+SGVKK NRQA++TRGRK
Sbjct: 121 KLSAVHRSLKVAKSGVKKGNRQAVRTRGRK 150

[Close]

BLAST of Carg18616 vs. ExPASy TrEMBL
Match: A0A6J1KHD5 (60S ribosomal protein L28-1-like OS=Cucurbita maxima OX=3661 GN=LOC111493869 PE=3 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 6.1e-66
Identity = 131/150 (87.33%), Postives = 141/150 (94.00%), Query Frame = 0


Query: 1   MANVPGQLAWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60
           MANVPGQL WEIVKKNS FLVKEFGRG+AGVQFSKEPNNLYNLNSYKHSGLAN+KTVTIQ
Sbjct: 1   MANVPGQLVWEIVKKNSCFLVKEFGRGSAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  EGGKDLSILIATTKTKKQNKPASLLHKSITRKEFPRMVKTVTNQVADNYYRPDLKNAALA 120
            GGKDLS+L+ATTK KKQNKPASLL+KS+ RKEFP M K VTNQVADNYYRPDLK AALA
Sbjct: 61  PGGKDLSVLLATTKRKKQNKPASLLNKSVMRKEFPSMAKAVTNQVADNYYRPDLKKAALA 120

Query: 121 KLSAVHRSLKVARSGVKKRNRQAIKTRGRK 151
           KLSAVHRSLK+A+SGVKKRNRQA++TRGRK
Sbjct: 121 KLSAVHRSLKIAKSGVKKRNRQAVRTRGRK 150

[Close]

BLAST of Carg18616 vs. TAIR 10
Match: AT4G29410.1 (Ribosomal L28e protein family )

HSP 1 Score: 202.6 bits (514), Expect = 2.2e-52
Identity = 101/143 (70.63%), Postives = 119/143 (83.22%), Query Frame = 0


Query: 1   MANVPGQLAWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60
           MA VPGQL WEIVK+N+ FLVK+FGRGNA VQFSKE NNL N+NSYKHSGLAN+KTVTIQ
Sbjct: 1   MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQ 60

Query: 61  EGGKDLSILIATTKTKKQNKPASLLHKSITRKEFPRMVKTVTNQVADNYYRPDLKNAALA 120
             GKD  +++ TTKTK+QNKP   ++KSI +KEF RM K V NQV DNYYRPDLK AALA
Sbjct: 61  AAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALA 120

Query: 121 KLSAVHRSLKVARSGVKKRNRQA 144
           +LSA+ + L+VA+SG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGPKRRNRQA 143

[Close]

BLAST of Carg18616 vs. TAIR 10
Match: AT4G29410.2 (Ribosomal L28e protein family )

HSP 1 Score: 202.6 bits (514), Expect = 2.2e-52
Identity = 101/143 (70.63%), Postives = 119/143 (83.22%), Query Frame = 0


Query: 1   MANVPGQLAWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60
           MA VPGQL WEIVK+N+ FLVK+FGRGNA VQFSKE NNL N+NSYKHSGLAN+KTVTIQ
Sbjct: 1   MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQ 60

Query: 61  EGGKDLSILIATTKTKKQNKPASLLHKSITRKEFPRMVKTVTNQVADNYYRPDLKNAALA 120
             GKD  +++ TTKTK+QNKP   ++KSI +KEF RM K V NQV DNYYRPDLK AALA
Sbjct: 61  AAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALA 120

Query: 121 KLSAVHRSLKVARSGVKKRNRQA 144
           +LSA+ + L+VA+SG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGPKRRNRQA 143

[Close]

BLAST of Carg18616 vs. TAIR 10
Match: AT2G19730.1 (Ribosomal L28e protein family )

HSP 1 Score: 201.8 bits (512), Expect = 3.8e-52
Identity = 101/143 (70.63%), Postives = 120/143 (83.92%), Query Frame = 0


Query: 1   MANVPGQLAWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60
           MA VPGQL WEIVK N+ FLVK+FGRGN+ VQFSKE NNL N++SYKHSGLAN+KTVTIQ
Sbjct: 1   MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60

Query: 61  EGGKDLSILIATTKTKKQNKPASLLHKSITRKEFPRMVKTVTNQVADNYYRPDLKNAALA 120
              KD ++++ATTKTKKQNKP   ++KSI +KEFPRM K V NQV DNYYRPDLK AALA
Sbjct: 61  AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120

Query: 121 KLSAVHRSLKVARSGVKKRNRQA 144
           +LSA+ + L+VA+SG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA 143

[Close]

BLAST of Carg18616 vs. TAIR 10
Match: AT2G19730.2 (Ribosomal L28e protein family )

HSP 1 Score: 201.8 bits (512), Expect = 3.8e-52
Identity = 101/143 (70.63%), Postives = 120/143 (83.92%), Query Frame = 0


Query: 1   MANVPGQLAWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60
           MA VPGQL WEIVK N+ FLVK+FGRGN+ VQFSKE NNL N++SYKHSGLAN+KTVTIQ
Sbjct: 1   MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60

Query: 61  EGGKDLSILIATTKTKKQNKPASLLHKSITRKEFPRMVKTVTNQVADNYYRPDLKNAALA 120
              KD ++++ATTKTKKQNKP   ++KSI +KEFPRM K V NQV DNYYRPDLK AALA
Sbjct: 61  AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120

Query: 121 KLSAVHRSLKVARSGVKKRNRQA 144
           +LSA+ + L+VA+SG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA 143

[Close]

BLAST of Carg18616 vs. TAIR 10
Match: AT2G19730.3 (Ribosomal L28e protein family )

HSP 1 Score: 201.8 bits (512), Expect = 3.8e-52
Identity = 101/143 (70.63%), Postives = 120/143 (83.92%), Query Frame = 0


Query: 1   MANVPGQLAWEIVKKNSSFLVKEFGRGNAGVQFSKEPNNLYNLNSYKHSGLANRKTVTIQ 60
           MA VPGQL WEIVK N+ FLVK+FGRGN+ VQFSKE NNL N++SYKHSGLAN+KTVTIQ
Sbjct: 1   MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60

Query: 61  EGGKDLSILIATTKTKKQNKPASLLHKSITRKEFPRMVKTVTNQVADNYYRPDLKNAALA 120
              KD ++++ATTKTKKQNKP   ++KSI +KEFPRM K V NQV DNYYRPDLK AALA
Sbjct: 61  AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120

Query: 121 KLSAVHRSLKVARSGVKKRNRQA 144
           +LSA+ + L+VA+SG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA 143

The following BLAST results are available for this feature:

BLAST of Carg18616 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7021324.1	2.5e-74	100.00	60S ribosomal protein L28-1 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022938097.1	3.7e-73	98.67	60S ribosomal protein L28-2-like [Cucurbita moschata]	[more]
KAG6586468.1	1.4e-72	98.00	60S ribosomal protein L28-1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022965993.1	7.6e-71	95.33	60S ribosomal protein L28-2-like isoform X1 [Cucurbita maxima]	[more]
XP_038889445.1	2.1e-68	90.67	60S ribosomal protein L28-1-like [Benincasa hispida]	[more]

BLAST of Carg18616 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M0E2	3.1e-51	70.63	60S ribosomal protein L28-2 OS=Arabidopsis thaliana OX=3702 GN=RPL28C PE=2 SV=1	[more]
O82204	5.4e-51	70.63	60S ribosomal protein L28-1 OS=Arabidopsis thaliana OX=3702 GN=RPL28A PE=1 SV=1	[more]
Q962T2	2.9e-12	36.36	60S ribosomal protein L28 OS=Spodoptera frugiperda OX=7108 GN=RpL28 PE=2 SV=1	[more]
O14069	4.9e-12	34.13	Probable 60S ribosomal protein L28e OS=Schizosaccharomyces pombe (strain 972 / A...	[more]
Q3T0L7	6.4e-12	32.52	60S ribosomal protein L28 OS=Bos taurus OX=9913 GN=RPL28 PE=2 SV=3	[more]

BLAST of Carg18616 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FD25	1.8e-73	98.67	60S ribosomal protein L28-2-like OS=Cucurbita moschata OX=3662 GN=LOC111444289 P...	[more]
A0A6J1HQK6	3.7e-71	95.33	60S ribosomal protein L28-2-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1DMI9	1.5e-67	89.33	60S ribosomal protein L28-1-like OS=Momordica charantia OX=3673 GN=LOC111021927 ...	[more]
A0A1S3CAX2	4.7e-66	88.00	60S ribosomal protein L28-1-like OS=Cucumis melo OX=3656 GN=LOC103498417 PE=3 SV...	[more]
A0A6J1KHD5	6.1e-66	87.33	60S ribosomal protein L28-1-like OS=Cucurbita maxima OX=3661 GN=LOC111493869 PE=...	[more]

BLAST of Carg18616 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G29410.1	2.2e-52	70.63	Ribosomal L28e protein family	[more]
AT4G29410.2	2.2e-52	70.63	Ribosomal L28e protein family	[more]
AT2G19730.1	3.8e-52	70.63	Ribosomal L28e protein family	[more]
AT2G19730.2	3.8e-52	70.63	Ribosomal L28e protein family	[more]
AT2G19730.3	3.8e-52	70.63	Ribosomal L28e protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.390.110		coord: 6..133 e-value: 3.4E-42 score: 145.9
None	No IPR available	PANTHER	PTHR10544:SF19	60S RIBOSOMAL PROTEIN L28-1-LIKE	coord: 1..150
IPR029004	Ribosomal L28e/Mak16	PFAM	PF01778	Ribosomal_L28e	coord: 8..128 e-value: 9.8E-33 score: 113.3
IPR002672	Ribosomal protein L28e	PANTHER	PTHR10544	60S RIBOSOMAL PROTEIN L28	coord: 1..150

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18616-RA	Carg18616-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
biological_process	GO:0006412	translation
cellular_component	GO:0005829	cytosol
cellular_component	GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
cellular_component	GO:0005840	ribosome
molecular_function	GO:0015078	proton transmembrane transporter activity
molecular_function	GO:0003735	structural constituent of ribosome