Carg28099 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg28099
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	myb family transcription factor PHL6-like
Location	Carg_Chr04: 12940075 .. 12941438 (-)
RNA-Seq Expression	Carg28099
Synteny	Carg28099

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TATCGCTCTCTCTCTATTTCACTTCACTTTCAAAGAAGCAAACCAAAGCAAAGCAAAGCAAAGCAAAGCAAAATGAGAGGCGTTGTTAGACAGTACGTAAGATCCAAAACGCCGCGTTTAAGATGGACTCCTCAACTCCACAACTCCTTCCTTCTTGCCATACAATCCCTGGGTGGCCATCAAAGTAATTCTTCATTTCTTCCTTTTCTTTTTTTAATACATTTATTTTGATTTTTGATATATTTTTGTTAGCAGAGGCAACTCCCAAGCTTCTACTTGAGCTGATGGATGTGAAAGGTGTGTCTATATCCCATGTTAAGAGCCATCTCCAGGTCCTCTTCATTTCTGTCAACTTTCATGTATTATTATTAATAATTTTATTTGACACGTGTATTGTATTGTATTGTATTTGTAGATGTATAGAAGTATGAGAGGCGAGGACGTGAGAAGACATGGCGGTATATTTTGATAATTTTAATTGCATTTATTGTTGTAGGTTTTGGTACATGTATATAATATAAGTAGGTGAGAGATTGGGGAAATTTGCATTGGTCTCAGAGCCAAAAGGTGGAGGTGGAGAAGGAATGATGAGGAAAAGGAGCACCGCAGCCAAGGAATATACGGGACAATATCAAATCCCGTATGCATATCATTATAACGTGCAAAACCCCATGCCCAACCACATTCTTACTACAAACATGCATCATGCCACCTCGCCTTTCTCTCTCCCACTTTCACAGGTCTCTCTCTACACTTTTTATTTATTTATTTTTTTTTTTAATATACCACTTAACTACAAGGCTTTTACCAAAATTAAAGGAAACAAATTGCTTTCAATTTAAATGAAAAAGTAGATTCAATTAAATGTAGAAAGTGGGGAGTAAAAAGGTATTTTGTATTGTTGCCAATGTCCCATCTCATAAATTCTACTTTTGTAGACCAATATTCAACAATTCAATTTATTAAAGTAGCACTTGAAAAGAAATGTTTGTGATGTGTATTTCTACTTTTTTAGGTAAAACAAACTTATACAAAATTAGATTTAAATAACAAAATATTGAAACCCTAGGTCTATTGTTTGATCACAGCTGACAAATGAAGAGGAACAAAAGCCTAAGCCCATGGGACGTCCTAAACACAATAGGGATGGAGGAAGAGTGGTAAAGAAACAGGACCAAGAAGAAGGCCAACCTAAGGATTTTGATCAGCTCTCATTGTCTCTTTCTCTACAACCAACTAACCCTCCCATTCCTTCGCTTTCCTCTTCTAATTCAACCTCTATTGACAAAAGTTTATGGATTCAGAAATGCGAAGAAATCGATTTGGACTTATCCATATCACTTTGTCCTAACTACCGAGGATAA

mRNA sequence

TATCGCTCTCTCTCTATTTCACTTCACTTTCAAAGAAGCAAACCAAAGCAAAGCAAAGCAAAGCAAAGCAAAATGAGAGGCGTTGTTAGACAGTACGTAAGATCCAAAACGCCGCGTTTAAGATGGACTCCTCAACTCCACAACTCCTTCCTTCTTGCCATACAATCCCTGGGTGGCCATCAAAAGGCAACTCCCAAGCTTCTACTTGAGCTGATGGATGTGAAAGGTGTGTCTATATCCCATGTTAAGAGCCATCTCCAGATGTATAGAAGTATGAGAGGCGAGGACGTGAGAAGACATGGCGAGCCAAAAGGTGGAGGTGGAGAAGGAATGATGAGGAAAAGGAGCACCGCAGCCAAGGAATATACGGGACAATATCAAATCCCGTATGCATATCATTATAACGTGCAAAACCCCATGCCCAACCACATTCTTACTACAAACATGCATCATGCCACCTCGCCTTTCTCTCTCCCACTTTCACAGCTGACAAATGAAGAGGAACAAAAGCCTAAGCCCATGGGACGTCCTAAACACAATAGGGATGGAGGAAGAGTGGTAAAGAAACAGGACCAAGAAGAAGGCCAACCTAAGGATTTTGATCAGCTCTCATTGTCTCTTTCTCTACAACCAACTAACCCTCCCATTCCTTCGCTTTCCTCTTCTAATTCAACCTCTATTGACAAAAGTTTATGGATTCAGAAATGCGAAGAAATCGATTTGGACTTATCCATATCACTTTGTCCTAACTACCGAGGATAA

Coding sequence (CDS)

ATGAGAGGCGTTGTTAGACAGTACGTAAGATCCAAAACGCCGCGTTTAAGATGGACTCCTCAACTCCACAACTCCTTCCTTCTTGCCATACAATCCCTGGGTGGCCATCAAAAGGCAACTCCCAAGCTTCTACTTGAGCTGATGGATGTGAAAGGTGTGTCTATATCCCATGTTAAGAGCCATCTCCAGATGTATAGAAGTATGAGAGGCGAGGACGTGAGAAGACATGGCGAGCCAAAAGGTGGAGGTGGAGAAGGAATGATGAGGAAAAGGAGCACCGCAGCCAAGGAATATACGGGACAATATCAAATCCCGTATGCATATCATTATAACGTGCAAAACCCCATGCCCAACCACATTCTTACTACAAACATGCATCATGCCACCTCGCCTTTCTCTCTCCCACTTTCACAGCTGACAAATGAAGAGGAACAAAAGCCTAAGCCCATGGGACGTCCTAAACACAATAGGGATGGAGGAAGAGTGGTAAAGAAACAGGACCAAGAAGAAGGCCAACCTAAGGATTTTGATCAGCTCTCATTGTCTCTTTCTCTACAACCAACTAACCCTCCCATTCCTTCGCTTTCCTCTTCTAATTCAACCTCTATTGACAAAAGTTTATGGATTCAGAAATGCGAAGAAATCGATTTGGACTTATCCATATCACTTTGTCCTAACTACCGAGGATAA

Protein sequence

MRGVVRQYVRSKTPRLRWTPQLHNSFLLAIQSLGGHQKATPKLLLELMDVKGVSISHVKSHLQMYRSMRGEDVRRHGEPKGGGGEGMMRKRSTAAKEYTGQYQIPYAYHYNVQNPMPNHILTTNMHHATSPFSLPLSQLTNEEEQKPKPMGRPKHNRDGGRVVKKQDQEEGQPKDFDQLSLSLSLQPTNPPIPSLSSSNSTSIDKSLWIQKCEEIDLDLSISLCPNYRG

Homology

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BLAST of Carg28099 vs. NCBI nr
Match: KAG7032464.1 (putative Myb family transcription factor [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 461.1 bits (1185), Expect = 5.7e-126
Identity = 229/229 (100.00%), Postives = 229/229 (100.00%), Query Frame = 0


Query: 1   MRGVVRQYVRSKTPRLRWTPQLHNSFLLAIQSLGGHQKATPKLLLELMDVKGVSISHVKS 60
           MRGVVRQYVRSKTPRLRWTPQLHNSFLLAIQSLGGHQKATPKLLLELMDVKGVSISHVKS
Sbjct: 1   MRGVVRQYVRSKTPRLRWTPQLHNSFLLAIQSLGGHQKATPKLLLELMDVKGVSISHVKS 60

Query: 61  HLQMYRSMRGEDVRRHGEPKGGGGEGMMRKRSTAAKEYTGQYQIPYAYHYNVQNPMPNHI 120
           HLQMYRSMRGEDVRRHGEPKGGGGEGMMRKRSTAAKEYTGQYQIPYAYHYNVQNPMPNHI
Sbjct: 61  HLQMYRSMRGEDVRRHGEPKGGGGEGMMRKRSTAAKEYTGQYQIPYAYHYNVQNPMPNHI 120

Query: 121 LTTNMHHATSPFSLPLSQLTNEEEQKPKPMGRPKHNRDGGRVVKKQDQEEGQPKDFDQLS 180
           LTTNMHHATSPFSLPLSQLTNEEEQKPKPMGRPKHNRDGGRVVKKQDQEEGQPKDFDQLS
Sbjct: 121 LTTNMHHATSPFSLPLSQLTNEEEQKPKPMGRPKHNRDGGRVVKKQDQEEGQPKDFDQLS 180

Query: 181 LSLSLQPTNPPIPSLSSSNSTSIDKSLWIQKCEEIDLDLSISLCPNYRG 230
           LSLSLQPTNPPIPSLSSSNSTSIDKSLWIQKCEEIDLDLSISLCPNYRG
Sbjct: 181 LSLSLQPTNPPIPSLSSSNSTSIDKSLWIQKCEEIDLDLSISLCPNYRG 229

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BLAST of Carg28099 vs. NCBI nr
Match: KAG6601716.1 (putative Myb family transcription factor, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 451.1 bits (1159), Expect = 5.9e-123
Identity = 227/229 (99.13%), Postives = 227/229 (99.13%), Query Frame = 0


Query: 1   MRGVVRQYVRSKTPRLRWTPQLHNSFLLAIQSLGGHQKATPKLLLELMDVKGVSISHVKS 60
           MRGVVRQYVRSKTPRLRWTPQLHNSFLLAIQSLGGHQKATPKLLLELMDVKGVSISHVKS
Sbjct: 1   MRGVVRQYVRSKTPRLRWTPQLHNSFLLAIQSLGGHQKATPKLLLELMDVKGVSISHVKS 60

Query: 61  HLQMYRSMRGEDVRRHGEPKGGGGEGMMRKRSTAAKEYTGQYQIPYAYHYNVQNPMPNHI 120
           HLQMYRSMRGEDVRRHGEPKGGGGEGMMRKRSTAAKEYTGQYQIPYAYHYNVQNPMPNHI
Sbjct: 61  HLQMYRSMRGEDVRRHGEPKGGGGEGMMRKRSTAAKEYTGQYQIPYAYHYNVQNPMPNHI 120

Query: 121 LTTNMHHATSPFSLPLSQLTNEEEQKPKPMGRPKHNRDGGRVVKKQDQEEGQPKDFDQLS 180
           LTTNMHHATSPFSLPLSQLTNEEEQKPKPMGRPKHNRDGGRVVKKQDQEEGQPKDFDQLS
Sbjct: 121 LTTNMHHATSPFSLPLSQLTNEEEQKPKPMGRPKHNRDGGRVVKKQDQEEGQPKDFDQLS 180

Query: 181 LSLSLQPTNPPIPSLSSSNSTSIDKSLWIQKCEEIDLDLSISLCPNYRG 230
           LSLSLQPTNPPI SLSSS STSIDKSLWIQKCEEIDLDLSISLCPNYRG
Sbjct: 181 LSLSLQPTNPPISSLSSS-STSIDKSLWIQKCEEIDLDLSISLCPNYRG 228

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BLAST of Carg28099 vs. NCBI nr
Match: XP_022929947.1 (myb family transcription factor PHL6-like [Cucurbita moschata])

HSP 1 Score: 443.4 bits (1139), Expect = 1.2e-120
Identity = 221/229 (96.51%), Postives = 225/229 (98.25%), Query Frame = 0


Query: 1   MRGVVRQYVRSKTPRLRWTPQLHNSFLLAIQSLGGHQKATPKLLLELMDVKGVSISHVKS 60
           MRG VRQYVRSKTPRLRWTPQLHNSFLLAIQSLGGHQKATPKLLL+LMDVKGVS+SHVKS
Sbjct: 1   MRGAVRQYVRSKTPRLRWTPQLHNSFLLAIQSLGGHQKATPKLLLQLMDVKGVSVSHVKS 60

Query: 61  HLQMYRSMRGEDVRRHGEPKGGGGEGMMRKRSTAAKEYTGQYQIPYAYHYNVQNPMPNHI 120
           HLQMYRSMRGEDVRRHGEPKGGGGEGMMRKRSTAAKEYTGQYQIPYAYHYNVQNPMPNHI
Sbjct: 61  HLQMYRSMRGEDVRRHGEPKGGGGEGMMRKRSTAAKEYTGQYQIPYAYHYNVQNPMPNHI 120

Query: 121 LTTNMHHATSPFSLPLSQLTNEEEQKPKPMGRPKHNRDGGRVVKKQDQEEGQPKDFDQLS 180
           LTTNMHHATSPFSLPLSQLTNEEEQK KPMGRPKHNRDGGRVVKKQDQEEGQPKDFDQLS
Sbjct: 121 LTTNMHHATSPFSLPLSQLTNEEEQKSKPMGRPKHNRDGGRVVKKQDQEEGQPKDFDQLS 180

Query: 181 LSLSLQPTNPPIPSLSSSNSTSIDKSLWIQKCEEIDLDLSISLCPNYRG 230
           LSLSLQPTNPPIPSLSSS+S+SI KSL IQKCEEIDLDLSISLCPNYRG
Sbjct: 181 LSLSLQPTNPPIPSLSSSSSSSIHKSLSIQKCEEIDLDLSISLCPNYRG 229

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BLAST of Carg28099 vs. NCBI nr
Match: XP_023516803.1 (putative Myb family transcription factor At1g14600 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 428.7 bits (1101), Expect = 3.1e-116
Identity = 216/230 (93.91%), Postives = 225/230 (97.83%), Query Frame = 0


Query: 1   MRGVVRQYVRSKTPRLRWTPQLHNSFLLAIQSLGGHQKATPKLLLELMDVKGVSISHVKS 60
           MRGVVRQYVRSKTPRLRWTPQLHNSFLLAIQSLGGHQKATPKLLL+LMDVKGVSISHVKS
Sbjct: 1   MRGVVRQYVRSKTPRLRWTPQLHNSFLLAIQSLGGHQKATPKLLLQLMDVKGVSISHVKS 60

Query: 61  HLQMYRSMRGEDVRRHGEPKGGGGEGMMRKRSTAAKEYTGQYQIPYAYHYNVQNPMPNHI 120
           HLQMYRSMRGEDVRRHGEPKGGGGEGMMRKRSTAAKEYTGQYQIPYAYHYNV +PMPNHI
Sbjct: 61  HLQMYRSMRGEDVRRHGEPKGGGGEGMMRKRSTAAKEYTGQYQIPYAYHYNVHHPMPNHI 120

Query: 121 LTTNMHHA-TSPFSLPLSQLTNEEEQKPKPMGRPKHNRDGGRVVKKQDQEEGQPKDFDQL 180
           LTTNMHHA +SPFSLPLSQLTNEEEQKP+PMGRPKH RDGGRVVKKQDQEEGQP+D+DQL
Sbjct: 121 LTTNMHHASSSPFSLPLSQLTNEEEQKPRPMGRPKHTRDGGRVVKKQDQEEGQPEDYDQL 180

Query: 181 SLSLSLQPTNPPIPSLSSSNSTSIDKSLWIQKCEEIDLDLSISLCPNYRG 230
           SLSLSLQPTNPPIPSLSSS+S+SIDKSL IQK EEI+LDLSISLCPNYRG
Sbjct: 181 SLSLSLQPTNPPIPSLSSSSSSSIDKSLSIQKWEEINLDLSISLCPNYRG 230

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BLAST of Carg28099 vs. NCBI nr
Match: XP_022991492.1 (putative Myb family transcription factor At1g14600 [Cucurbita maxima])

HSP 1 Score: 422.5 bits (1085), Expect = 2.2e-114
Identity = 213/229 (93.01%), Postives = 220/229 (96.07%), Query Frame = 0


Query: 1   MRGVVRQYVRSKTPRLRWTPQLHNSFLLAIQSLGGHQKATPKLLLELMDVKGVSISHVKS 60
           MRGVVRQYVRSKTPRLRWTPQLHNSFLLAIQSLGGHQKATPKLLL+LMDVKGVSISHVKS
Sbjct: 1   MRGVVRQYVRSKTPRLRWTPQLHNSFLLAIQSLGGHQKATPKLLLQLMDVKGVSISHVKS 60

Query: 61  HLQMYRSMRGEDVRRHGEPKGGGGEGMMRKRSTAAKEYTGQYQIPYAYHYNVQNPMPNHI 120
           HLQMYRSMRGEDVRRH EPK GGGEGMMRKRSTAAKEYTGQYQIPYAYHYNV +PMPNHI
Sbjct: 61  HLQMYRSMRGEDVRRHAEPKAGGGEGMMRKRSTAAKEYTGQYQIPYAYHYNVHHPMPNHI 120

Query: 121 LTTNMHHATSPFSLPLSQLTNEEEQKPKPMGRPKHNRDGGRVVKKQDQEEGQPKDFDQLS 180
           LTTNMHHATSPFSLPLSQLTNEEEQK KPMGRPKH RDGGRVVKKQD+EEGQ KDFDQLS
Sbjct: 121 LTTNMHHATSPFSLPLSQLTNEEEQKHKPMGRPKHTRDGGRVVKKQDREEGQHKDFDQLS 180

Query: 181 LSLSLQPTNPPIPSLSSSNSTSIDKSLWIQKCEEIDLDLSISLCPNYRG 230
           LSLSLQPTNPPIPSLSSS+ TS+DKSL IQK +EIDLDLSISLCPNY+G
Sbjct: 181 LSLSLQPTNPPIPSLSSSSLTSLDKSLPIQKHQEIDLDLSISLCPNYQG 229

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BLAST of Carg28099 vs. ExPASy Swiss-Prot
Match: A3AWH5 (Myb family transcription factor MOF1 OS=Oryza sativa subsp. japonica OX=39947 GN=MOF1 PE=1 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 5.2e-21
Identity = 56/99 (56.57%), Postives = 67/99 (67.68%), Query Frame = 0


Query: 3   GVVRQYVRSKTPRLRWTPQLHNSFLLAIQSLGGHQKATPKLLLELMDVKGVSISHVKSHL 62
           G VRQY+RSK PRLRWT +LH SF+ AI+ LGG  KATPKL+L+LM VKG++ISHVKSHL
Sbjct: 12  GAVRQYIRSKVPRLRWTGELHCSFVQAIEFLGGQDKATPKLILQLMGVKGLTISHVKSHL 71

Query: 63  QMYRSMR----GEDVRRHGEPKGGGGEGMMRKRSTAAKE 98
           QMYR  R    G   R   +P+      + RK S  A E
Sbjct: 72  QMYRCSRLGSHGTGRRSEMQPQ------LQRKHSCGADE 104

[Close]

BLAST of Carg28099 vs. ExPASy Swiss-Prot
Match: Q700D9 (Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana OX=3702 GN=At1g14600 PE=2 SV=2)

HSP 1 Score: 100.5 bits (249), Expect = 2.6e-20
Identity = 51/89 (57.30%), Postives = 63/89 (70.79%), Query Frame = 0


Query: 3  GVVRQYVRSKTPRLRWTPQLHNSFLLAIQSLGGHQKATPKLLLELMDVKGVSISHVKSHL 62
          G VR YVRS  PRLRWTP+LH SF+ A+  LGG  KATPKL+L++MDVKG++ISHVKSHL
Sbjct: 13 GGVRPYVRSPVPRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHL 72

Query: 63 QMYRSMRGEDVRRHGEPKGGGGEGMMRKR 92
          QMY   RG  +   G+P+        R+R
Sbjct: 73 QMY---RGSRITLLGKPEESSSPSSRRRR 98

[Close]

BLAST of Carg28099 vs. ExPASy Swiss-Prot
Match: A0A0P0X0C0 (Myb family transcription factor MPH1 OS=Oryza sativa subsp. japonica OX=39947 GN=MPH1 PE=2 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 7.0e-18
Identity = 41/63 (65.08%), Postives = 52/63 (82.54%), Query Frame = 0


Query: 5  VRQYVRSKTPRLRWTPQLHNSFLLAIQSLGGHQKATPKLLLELMDVKGVSISHVKSHLQM 64
          VRQY RS+ PR+RWT ++H  F+ A++ LGG  +ATPK +L+LM VKGVSISH+KSHLQM
Sbjct: 9  VRQYNRSEVPRMRWTEEMHRQFVEAVECLGGQDEATPKRILQLMGVKGVSISHIKSHLQM 68

Query: 65 YRS 68
          YRS
Sbjct: 69 YRS 71

[Close]

BLAST of Carg28099 vs. ExPASy Swiss-Prot
Match: Q9FJV5 (Probable transcription factor KAN4 OS=Arabidopsis thaliana OX=3702 GN=KAN4 PE=1 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.1e-15
Identity = 41/81 (50.62%), Postives = 58/81 (71.60%), Query Frame = 0


Query: 12  KTPRLRWTPQLHNSFLLAIQSLGGHQKATPKLLLELMDVKGVSISHVKSHLQMYRSMRGE 71
           + PR+RWT  LH  F+ A+Q LGGH++ATPK +LELM+VK ++++HVKSHLQMYR+++  
Sbjct: 104 RAPRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKCT 163

Query: 72  DVRRHGEPKGGGGEGMMRKRS 93
           D       KG  GEG + K +
Sbjct: 164 D-------KGSPGEGKVEKEA 177

[Close]

BLAST of Carg28099 vs. ExPASy Swiss-Prot
Match: Q0J235 (Probable transcription factor RL9 OS=Oryza sativa subsp. japonica OX=39947 GN=RL9 PE=2 SV=2)

HSP 1 Score: 83.6 bits (205), Expect = 3.2e-15
Identity = 38/75 (50.67%), Postives = 53/75 (70.67%), Query Frame = 0


Query: 12  KTPRLRWTPQLHNSFLLAIQSLGGHQKATPKLLLELMDVKGVSISHVKSHLQMYRSMRGE 71
           + PR+RWT  LH  F+ A++ LGGH++ATPK +LELMDVK ++++HVKSHLQMYR+++  
Sbjct: 323 RAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKST 382

Query: 72  DVRRHGEPKGGGGEG 87
           D          GG G
Sbjct: 383 DKPAASSGPADGGSG 397

[Close]

BLAST of Carg28099 vs. ExPASy TrEMBL
Match: A0A6J1EP17 (myb family transcription factor PHL6-like OS=Cucurbita moschata OX=3662 GN=LOC111436407 PE=4 SV=1)

HSP 1 Score: 443.4 bits (1139), Expect = 6.0e-121
Identity = 221/229 (96.51%), Postives = 225/229 (98.25%), Query Frame = 0


Query: 1   MRGVVRQYVRSKTPRLRWTPQLHNSFLLAIQSLGGHQKATPKLLLELMDVKGVSISHVKS 60
           MRG VRQYVRSKTPRLRWTPQLHNSFLLAIQSLGGHQKATPKLLL+LMDVKGVS+SHVKS
Sbjct: 1   MRGAVRQYVRSKTPRLRWTPQLHNSFLLAIQSLGGHQKATPKLLLQLMDVKGVSVSHVKS 60

Query: 61  HLQMYRSMRGEDVRRHGEPKGGGGEGMMRKRSTAAKEYTGQYQIPYAYHYNVQNPMPNHI 120
           HLQMYRSMRGEDVRRHGEPKGGGGEGMMRKRSTAAKEYTGQYQIPYAYHYNVQNPMPNHI
Sbjct: 61  HLQMYRSMRGEDVRRHGEPKGGGGEGMMRKRSTAAKEYTGQYQIPYAYHYNVQNPMPNHI 120

Query: 121 LTTNMHHATSPFSLPLSQLTNEEEQKPKPMGRPKHNRDGGRVVKKQDQEEGQPKDFDQLS 180
           LTTNMHHATSPFSLPLSQLTNEEEQK KPMGRPKHNRDGGRVVKKQDQEEGQPKDFDQLS
Sbjct: 121 LTTNMHHATSPFSLPLSQLTNEEEQKSKPMGRPKHNRDGGRVVKKQDQEEGQPKDFDQLS 180

Query: 181 LSLSLQPTNPPIPSLSSSNSTSIDKSLWIQKCEEIDLDLSISLCPNYRG 230
           LSLSLQPTNPPIPSLSSS+S+SI KSL IQKCEEIDLDLSISLCPNYRG
Sbjct: 181 LSLSLQPTNPPIPSLSSSSSSSIHKSLSIQKCEEIDLDLSISLCPNYRG 229

[Close]

BLAST of Carg28099 vs. ExPASy TrEMBL
Match: A0A6J1JLZ1 (putative Myb family transcription factor At1g14600 OS=Cucurbita maxima OX=3661 GN=LOC111488089 PE=4 SV=1)

HSP 1 Score: 422.5 bits (1085), Expect = 1.1e-114
Identity = 213/229 (93.01%), Postives = 220/229 (96.07%), Query Frame = 0


Query: 1   MRGVVRQYVRSKTPRLRWTPQLHNSFLLAIQSLGGHQKATPKLLLELMDVKGVSISHVKS 60
           MRGVVRQYVRSKTPRLRWTPQLHNSFLLAIQSLGGHQKATPKLLL+LMDVKGVSISHVKS
Sbjct: 1   MRGVVRQYVRSKTPRLRWTPQLHNSFLLAIQSLGGHQKATPKLLLQLMDVKGVSISHVKS 60

Query: 61  HLQMYRSMRGEDVRRHGEPKGGGGEGMMRKRSTAAKEYTGQYQIPYAYHYNVQNPMPNHI 120
           HLQMYRSMRGEDVRRH EPK GGGEGMMRKRSTAAKEYTGQYQIPYAYHYNV +PMPNHI
Sbjct: 61  HLQMYRSMRGEDVRRHAEPKAGGGEGMMRKRSTAAKEYTGQYQIPYAYHYNVHHPMPNHI 120

Query: 121 LTTNMHHATSPFSLPLSQLTNEEEQKPKPMGRPKHNRDGGRVVKKQDQEEGQPKDFDQLS 180
           LTTNMHHATSPFSLPLSQLTNEEEQK KPMGRPKH RDGGRVVKKQD+EEGQ KDFDQLS
Sbjct: 121 LTTNMHHATSPFSLPLSQLTNEEEQKHKPMGRPKHTRDGGRVVKKQDREEGQHKDFDQLS 180

Query: 181 LSLSLQPTNPPIPSLSSSNSTSIDKSLWIQKCEEIDLDLSISLCPNYRG 230
           LSLSLQPTNPPIPSLSSS+ TS+DKSL IQK +EIDLDLSISLCPNY+G
Sbjct: 181 LSLSLQPTNPPIPSLSSSSLTSLDKSLPIQKHQEIDLDLSISLCPNYQG 229

[Close]

BLAST of Carg28099 vs. ExPASy TrEMBL
Match: A0A2Z6NR42 (HTH myb-type domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_16470 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 4.7e-25
Identity = 57/73 (78.08%), Postives = 67/73 (91.78%), Query Frame = 0


Query: 3  GVVRQYVRSKTPRLRWTPQLHNSFLLAIQSLGGHQKATPKLLLELMDVKGVSISHVKSHL 62
          GVVRQYVRSK PRLRWTP+LH  F+ AI++LGGHQKATPKL+L+LMDVKG++ISHVKSHL
Sbjct: 8  GVVRQYVRSKVPRLRWTPELHRCFVYAIETLGGHQKATPKLVLQLMDVKGLTISHVKSHL 67

Query: 63 QMYRSMRGEDVRR 76
          QMYRSMRGE  ++
Sbjct: 68 QMYRSMRGESCKQ 80

[Close]

BLAST of Carg28099 vs. ExPASy TrEMBL
Match: A0A072TFN8 (Myb-like DNA-binding domain, shaqkyf class protein OS=Medicago truncatula OX=3880 GN=25480675 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.0e-24
Identity = 56/73 (76.71%), Postives = 67/73 (91.78%), Query Frame = 0


Query: 3  GVVRQYVRSKTPRLRWTPQLHNSFLLAIQSLGGHQKATPKLLLELMDVKGVSISHVKSHL 62
          GVVRQYVRSK PRLRWTP+LH  F+ AI++LGGHQKATPKL+L+LMDVKG++ISHVKSHL
Sbjct: 8  GVVRQYVRSKVPRLRWTPELHRCFVYAIETLGGHQKATPKLVLQLMDVKGLTISHVKSHL 67

Query: 63 QMYRSMRGEDVRR 76
          QMYRSMRG+  ++
Sbjct: 68 QMYRSMRGDSCKQ 80

[Close]

BLAST of Carg28099 vs. ExPASy TrEMBL
Match: A0A1P8C4J4 (MYB12 OS=Eriobotrya japonica OX=32224 PE=2 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.4e-24
Identity = 56/73 (76.71%), Postives = 66/73 (90.41%), Query Frame = 0


Query: 3  GVVRQYVRSKTPRLRWTPQLHNSFLLAIQSLGGHQKATPKLLLELMDVKGVSISHVKSHL 62
          G VRQYVRSK PRLRWTP+LH  FL AI+ LGGH+KATPKL+L+LMDVKG++ISHVKSHL
Sbjct: 11 GAVRQYVRSKVPRLRWTPELHRCFLQAIERLGGHKKATPKLVLQLMDVKGLTISHVKSHL 70

Query: 63 QMYRSMRGEDVRR 76
          QMYRSM+G+ +RR
Sbjct: 71 QMYRSMKGDPIRR 83

[Close]

BLAST of Carg28099 vs. TAIR 10
Match: AT2G40260.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 101.7 bits (252), Expect = 8.2e-22
Identity = 47/70 (67.14%), Postives = 59/70 (84.29%), Query Frame = 0


Query: 3   GVVRQYVRSKTPRLRWTPQLHNSFLLAIQSLGGHQKATPKLLLELMDVKGVSISHVKSHL 62
           G VR Y RSKTPRLRWTP+LH  FL A++ LGG  +ATPKL+L+LM+VKG+SI+HVKSHL
Sbjct: 72  GSVRPYNRSKTPRLRWTPELHICFLQAVERLGGPDRATPKLVLQLMNVKGLSIAHVKSHL 131

Query: 63  QMYRSMRGED 73
           QMYRS + ++
Sbjct: 132 QMYRSKKTDE 141

[Close]

BLAST of Carg28099 vs. TAIR 10
Match: AT2G42660.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 101.3 bits (251), Expect = 1.1e-21
Identity = 48/73 (65.75%), Postives = 59/73 (80.82%), Query Frame = 0


Query: 5   VRQYVRSKTPRLRWTPQLHNSFLLAIQSLGGHQKATPKLLLELMDVKGVSISHVKSHLQM 64
           VRQY+RS  PRLRWTP LH SF+ A+Q LGG  +ATPKL+LE+M++KG+SI+HVKSHLQM
Sbjct: 42  VRQYIRSNMPRLRWTPDLHLSFVRAVQRLGGPDRATPKLVLEMMNLKGLSIAHVKSHLQM 101

Query: 65  YRSMRGEDVRRHG 78
           YRS + E   R G
Sbjct: 102 YRSKKLEPSSRPG 114

[Close]

BLAST of Carg28099 vs. TAIR 10
Match: AT1G14600.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 100.5 bits (249), Expect = 1.8e-21
Identity = 51/89 (57.30%), Postives = 63/89 (70.79%), Query Frame = 0


Query: 3  GVVRQYVRSKTPRLRWTPQLHNSFLLAIQSLGGHQKATPKLLLELMDVKGVSISHVKSHL 62
          G VR YVRS  PRLRWTP+LH SF+ A+  LGG  KATPKL+L++MDVKG++ISHVKSHL
Sbjct: 13 GGVRPYVRSPVPRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHL 72

Query: 63 QMYRSMRGEDVRRHGEPKGGGGEGMMRKR 92
          QMY   RG  +   G+P+        R+R
Sbjct: 73 QMY---RGSRITLLGKPEESSSPSSRRRR 98

[Close]

BLAST of Carg28099 vs. TAIR 10
Match: AT2G38300.1 (myb-like HTH transcriptional regulator family protein )

HSP 1 Score: 97.1 bits (240), Expect = 2.0e-20
Identity = 43/68 (63.24%), Postives = 57/68 (83.82%), Query Frame = 0


Query: 5   VRQYVRSKTPRLRWTPQLHNSFLLAIQSLGGHQKATPKLLLELMDVKGVSISHVKSHLQM 64
           VR YVRSK PRLRWTP LH  F+ A++ LGG ++ATPKL+ ++M++KG+SI+HVKSHLQM
Sbjct: 46  VRPYVRSKVPRLRWTPDLHLRFVRAVERLGGQERATPKLVRQMMNIKGLSIAHVKSHLQM 105

Query: 65  YRSMRGED 73
           YRS + +D
Sbjct: 106 YRSKKIDD 113

[Close]

BLAST of Carg28099 vs. TAIR 10
Match: AT2G02060.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 85.5 bits (210), Expect = 6.1e-17
Identity = 82/252 (32.54%), Postives = 119/252 (47.22%), Query Frame = 0


Query: 5   VRQYVRSKTPRLRWTPQLHNSFLLAIQSLGGHQKATPKLLLELMDVKGVSISHVKSHLQM 64
           VR YVRS  PRLRWTP LH  F+ A++ LGG  +ATPKL+L++MDVKG++ISHVKSHLQM
Sbjct: 21  VRPYVRSPVPRLRWTPDLHRCFVHAVEILGGQHRATPKLVLKMMDVKGLTISHVKSHLQM 80

Query: 65  YRSMRGEDVRRHGEPKGGGGEGMMRKRSTAAKEYTGQYQIPYAYHYNVQNPMPNHILTTN 124
           Y   RG       +P+      + R++ +         +  Y  H N+     N  L   
Sbjct: 81  Y---RGGSKLTLEKPEESSSSSIRRRQDS---------EEDYYLHDNLSLHTRNDCL-LG 140

Query: 125 MHHATSPFSLPLSQLTN--------EEEQKPKPMGRPKHNRDGGRVVKKQD--------- 184
            H      S PLS  ++         +EQ+    G    + D   + K  D         
Sbjct: 141 FH------SFPLSSHSSFRGGGGGRTKEQQTSESGGYDDDADFLHIKKMNDTTTFLSHHF 200

Query: 185 -------QEEGQPKDFDQLSLSLSL-----QPTNPPIPSLSSSNSTSIDKSLWIQK---- 224
                  +E+   ++ + LSLSLSL     +     + S +S  + S   + ++ K    
Sbjct: 201 PKGTEEWREQEHEEEEEDLSLSLSLNHHHWRSNGSSVVSETSEAAVSTCSAPFVSKDCFG 253

The following BLAST results are available for this feature:

BLAST of Carg28099 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7032464.1	5.7e-126	100.00	putative Myb family transcription factor [Cucurbita argyrosperma subsp. argyrosp...	[more]
KAG6601716.1	5.9e-123	99.13	putative Myb family transcription factor, partial [Cucurbita argyrosperma subsp....	[more]
XP_022929947.1	1.2e-120	96.51	myb family transcription factor PHL6-like [Cucurbita moschata]	[more]
XP_023516803.1	3.1e-116	93.91	putative Myb family transcription factor At1g14600 [Cucurbita pepo subsp. pepo]	[more]
XP_022991492.1	2.2e-114	93.01	putative Myb family transcription factor At1g14600 [Cucurbita maxima]	[more]

BLAST of Carg28099 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A3AWH5	5.2e-21	56.57	Myb family transcription factor MOF1 OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]
Q700D9	2.6e-20	57.30	Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana OX=37...	[more]
A0A0P0X0C0	7.0e-18	65.08	Myb family transcription factor MPH1 OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]
Q9FJV5	1.1e-15	50.62	Probable transcription factor KAN4 OS=Arabidopsis thaliana OX=3702 GN=KAN4 PE=1 ...	[more]
Q0J235	3.2e-15	50.67	Probable transcription factor RL9 OS=Oryza sativa subsp. japonica OX=39947 GN=RL...	[more]

BLAST of Carg28099 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EP17	6.0e-121	96.51	myb family transcription factor PHL6-like OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A6J1JLZ1	1.1e-114	93.01	putative Myb family transcription factor At1g14600 OS=Cucurbita maxima OX=3661 G...	[more]
A0A2Z6NR42	4.7e-25	78.08	HTH myb-type domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD...	[more]
A0A072TFN8	1.0e-24	76.71	Myb-like DNA-binding domain, shaqkyf class protein OS=Medicago truncatula OX=388...	[more]
A0A1P8C4J4	1.4e-24	76.71	MYB12 OS=Eriobotrya japonica OX=32224 PE=2 SV=1	[more]

BLAST of Carg28099 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G40260.1	8.2e-22	67.14	Homeodomain-like superfamily protein	[more]
AT2G42660.1	1.1e-21	65.75	Homeodomain-like superfamily protein	[more]
AT1G14600.1	1.8e-21	57.30	Homeodomain-like superfamily protein	[more]
AT2G38300.1	2.0e-20	63.24	myb-like HTH transcriptional regulator family protein	[more]
AT2G02060.1	6.1e-17	32.54	Homeodomain-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.10.60		coord: 13..69 e-value: 3.2E-23 score: 83.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..85
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 140..174
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 145..174
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..92
None	No IPR available	PANTHER	PTHR31314:SF93	OS02G0672300 PROTEIN	coord: 2..222
IPR006447	Myb domain, plants	TIGRFAM	TIGR01557	TIGR01557	coord: 14..67 e-value: 2.2E-21 score: 73.9
IPR044848	PHR1-like	PANTHER	PTHR31314	MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE	coord: 2..222
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 11..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg28099-RA	Carg28099-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity