Carg01724 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg01724
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr04: 9639229 .. 9640240 (-)
RNA-Seq Expression	Carg01724
Synteny	Carg01724

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTCTTAAAGAACTTACTGATACGCTTTCACGAGATTTTACAGAAGGCCAACCAAGAGCCCTTCTCAGGTTTGAGGACTTTTGGTTTCATCTTGATTTTTCCCCTGTTTTCAGATTATTAGTGTATACATGTAGAAGAAGTGATTAATGTTCACTAATGTGCAACAATGTTGTTTAACTGGGTTGTTCTCATTATACTTTGAGAAATTGGAATTTGAAAGGACCAACATCCCTTATCTGCCCCGAGATAACCCGATTTCCATTTCCATATCTCGTGCTAGTTCGATTATGTGAAGTATAAACCTTGCCTGTGTTAGATTGTCTTGGTTTATACTTTCTATTGGGGCTAAGTTATTAATTGAATAAAGGAGATAATAGATATGAATGGTCAGATTCTCTGGATTAGATGACCTCACTTCAAAAGTTTAGATTTTATTAAGTTTGCCGTTTTTTCTTTTCCTTTTTGCCAATTTCAGAATATAAATCTCTCTTTGCTATGCCCCCAACAATTGCATAGAAAAGACGGCGTGCTATGTTGCTCATCATTTATGCGGTTGTTTTGACTTATGGCAGGTCCGCATCAACTAGATGTTAATGGGAAGAGAGATTGTCTGCTGTGCATCCTCCTGTGTCGATTCCACCATCATCCACACATTTGTTCAAGTTGTTTATCTTACATATATTCCAAGAAGGAGGCGCAATCTCTTCCTTTTCCTAAAATTTATGAATAGTTCATGTTGGCAATGAGTAAAATACCATGCAACGTTAGGACTTTTTGAGGTGTGATTACTCCTTCACACGAATAAACTACAGTATTGAGAAATTCAATTCAACTCCAGATTCTACAGAATCAATGATATGTAAGGGTCATGGAACAAAATTTTGCCCCGTAAATCACTACTATGTCGCTTCTTGTGGCTGATTATTTCTTTAGAATCACTGTTCATTCATCATCCATTCTTTTGTAGCTCACTTAAAATTAAAGTTCTAACATTTTTTTTTAAGACTTTGCC

mRNA sequence

GGTCTTAAAGAACTTACTGATACGCTTTCACGAGATTTTACAGAAGGCCAACCAAGAGCCCTTCTCAGGTCCGCATCAACTAGATGTTAATGGGAAGAGAGATTGTCTGCTGTGCATCCTCCTGTGTCGATTCCACCATCATCCACACATTTGTTCAAGTTGTTTATCTTACATATATTCCAAGAAGGAGGCGCAATCTCTTCCTTTTCCTAAAATTTATGAATAGTTCATGTTGGCAATGAGTAAAATACCATGCAACGTTAGGACTTTTTGAGGTGTGATTACTCCTTCACACGAATAAACTACAGTATTGAGAAATTCAATTCAACTCCAGATTCTACAGAATCAATGATATGTAAGGGTCATGGAACAAAATTTTGCCCCGTAAATCACTACTATGTCGCTTCTTGTGGCTGATTATTTCTTTAGAATCACTGTTCATTCATCATCCATTCTTTTGTAGCTCACTTAAAATTAAAGTTCTAACATTTTTTTTTAAGACTTTGCC

Coding sequence (CDS)

GGTCTTAAAGAACTTACTGATACGCTTTCACGAGATTTTACAGAAGGCCAACCAAGAGCCCTTCTCAGGTCCGCATCAACTAGATGTTAA

Protein sequence

GLKELTDTLSRDFTEGQPRALLRSASTRC

Homology

[Close]

BLAST of Carg01724 vs. NCBI nr
Match: XP_022957047.1 (uncharacterized protein LOC111458539 [Cucurbita moschata])

HSP 1 Score: 60.5 bits (145), Expect = 2.8e-06
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0


Query: 1   GLKELTDTLSRDFTEGQPRALLRSASTRC 30
           GLKELTDTLSRDFTEGQPRALLRSASTRC
Sbjct: 265 GLKELTDTLSRDFTEGQPRALLRSASTRC 293

[Close]

BLAST of Carg01724 vs. NCBI nr
Match: KAG7032193.1 (hypothetical protein SDJN02_06236, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 60.5 bits (145), Expect = 2.8e-06
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0


Query: 1  GLKELTDTLSRDFTEGQPRALLRSASTRC 30
          GLKELTDTLSRDFTEGQPRALLRSASTRC
Sbjct: 1  GLKELTDTLSRDFTEGQPRALLRSASTRC 29

[Close]

BLAST of Carg01724 vs. NCBI nr
Match: KAG6601413.1 (hypothetical protein SDJN03_06646, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 60.5 bits (145), Expect = 2.8e-06
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0


Query: 1   GLKELTDTLSRDFTEGQPRALLRSASTRC 30
           GLKELTDTLSRDFTEGQPRALLRSASTRC
Sbjct: 265 GLKELTDTLSRDFTEGQPRALLRSASTRC 293

[Close]

BLAST of Carg01724 vs. NCBI nr
Match: XP_023000123.1 (uncharacterized protein LOC111494386 [Cucurbita maxima])

HSP 1 Score: 59.3 bits (142), Expect = 6.3e-06
Identity = 28/29 (96.55%), Postives = 29/29 (100.00%), Query Frame = 0


Query: 1   GLKELTDTLSRDFTEGQPRALLRSASTRC 30
           GLKELTDTLSRDFTEGQP+ALLRSASTRC
Sbjct: 265 GLKELTDTLSRDFTEGQPKALLRSASTRC 293

[Close]

BLAST of Carg01724 vs. NCBI nr
Match: XP_022968362.1 (uncharacterized protein LOC111467623 [Cucurbita maxima])

HSP 1 Score: 55.5 bits (132), Expect = 9.1e-05
Identity = 26/29 (89.66%), Postives = 28/29 (96.55%), Query Frame = 0


Query: 1   GLKELTDTLSRDFTEGQPRALLRSASTRC 30
           GLKELTDTLSRDFTE QPRALLR++STRC
Sbjct: 265 GLKELTDTLSRDFTEDQPRALLRASSTRC 293

[Close]

BLAST of Carg01724 vs. ExPASy TrEMBL
Match: A0A6J1GY34 (uncharacterized protein LOC111458539 OS=Cucurbita moschata OX=3662 GN=LOC111458539 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.4e-06
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0


Query: 1   GLKELTDTLSRDFTEGQPRALLRSASTRC 30
           GLKELTDTLSRDFTEGQPRALLRSASTRC
Sbjct: 265 GLKELTDTLSRDFTEGQPRALLRSASTRC 293

[Close]

BLAST of Carg01724 vs. ExPASy TrEMBL
Match: A0A6J1KLR1 (uncharacterized protein LOC111494386 OS=Cucurbita maxima OX=3661 GN=LOC111494386 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.1e-06
Identity = 28/29 (96.55%), Postives = 29/29 (100.00%), Query Frame = 0


Query: 1   GLKELTDTLSRDFTEGQPRALLRSASTRC 30
           GLKELTDTLSRDFTEGQP+ALLRSASTRC
Sbjct: 265 GLKELTDTLSRDFTEGQPKALLRSASTRC 293

[Close]

BLAST of Carg01724 vs. ExPASy TrEMBL
Match: A0A6J1HTC5 (uncharacterized protein LOC111467623 OS=Cucurbita maxima OX=3661 GN=LOC111467623 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 4.4e-05
Identity = 26/29 (89.66%), Postives = 28/29 (96.55%), Query Frame = 0


Query: 1   GLKELTDTLSRDFTEGQPRALLRSASTRC 30
           GLKELTDTLSRDFTE QPRALLR++STRC
Sbjct: 265 GLKELTDTLSRDFTEDQPRALLRASSTRC 293

[Close]

BLAST of Carg01724 vs. ExPASy TrEMBL
Match: A0A6J1DCD3 (uncharacterized protein LOC111019198 OS=Momordica charantia OX=3673 GN=LOC111019198 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.7e-04
Identity = 26/29 (89.66%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 1   GLKELTDTLSRDFTEGQPRALLRSASTRC 30
           GLKELTDTLSR FTE QPRALLRS STRC
Sbjct: 265 GLKELTDTLSRGFTEDQPRALLRSTSTRC 293

[Close]

BLAST of Carg01724 vs. ExPASy TrEMBL
Match: A0A6J1G0S9 (uncharacterized protein LOC111449632 OS=Cucurbita moschata OX=3662 GN=LOC111449632 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.7e-04
Identity = 25/29 (86.21%), Postives = 27/29 (93.10%), Query Frame = 0


Query: 1   GLKELTDTLSRDFTEGQPRALLRSASTRC 30
           GLKELTDTLSRDFTE QPRALLR++S RC
Sbjct: 265 GLKELTDTLSRDFTEDQPRALLRASSARC 293

The following BLAST results are available for this feature:

BLAST of Carg01724 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022957047.1	2.8e-06	100.00	uncharacterized protein LOC111458539 [Cucurbita moschata]	[more]
KAG7032193.1	2.8e-06	100.00	hypothetical protein SDJN02_06236, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6601413.1	2.8e-06	100.00	hypothetical protein SDJN03_06646, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023000123.1	6.3e-06	96.55	uncharacterized protein LOC111494386 [Cucurbita maxima]	[more]
XP_022968362.1	9.1e-05	89.66	uncharacterized protein LOC111467623 [Cucurbita maxima]	[more]

BLAST of Carg01724 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg01724 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GY34	1.4e-06	100.00	uncharacterized protein LOC111458539 OS=Cucurbita moschata OX=3662 GN=LOC1114585...	[more]
A0A6J1KLR1	3.1e-06	96.55	uncharacterized protein LOC111494386 OS=Cucurbita maxima OX=3661 GN=LOC111494386...	[more]
A0A6J1HTC5	4.4e-05	89.66	uncharacterized protein LOC111467623 OS=Cucurbita maxima OX=3661 GN=LOC111467623...	[more]
A0A6J1DCD3	1.7e-04	89.66	uncharacterized protein LOC111019198 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A6J1G0S9	1.7e-04	86.21	uncharacterized protein LOC111449632 OS=Cucurbita moschata OX=3662 GN=LOC1114496...	[more]

BLAST of Carg01724 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg01724-RA	Carg01724-RA	mRNA