Carg13198 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg13198
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	COBRA-like protein
Location	Carg_Chr04: 2887830 .. 2888838 (-)
RNA-Seq Expression	Carg13198
Synteny	Carg13198

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTTACAGGTCAGGTGAAACTCCTTCTGTGTTGCAGCTTCCACATGAACACTACACTGCTGAAGTAGAACCATTGGTGAGGTGTTCACAGCATATGTGCCCAATAAGGGTGCATTGGCATGTGAAACAGAGCTATACACAGTATTGGAGGGTAAAGATAACTATCACAAATCTAAACTTTGCCAAGAACTACTCTCAATGGAGCTTAGTAGTGTTGCATCCCAACTTGAGGAATATTACTCAAGTTTTCAGCTTCAACTACAGCCCTCTCAATCAATATGGTCACATAAGTAAGTTCAACCACTGTCCATTTGATCTTACGAGTTTGAAAGACGTCCTTTTTTATGTTTGAAGACTCGACCATTTCTCTCGGTCGTATTTGAGGTACTTTTGAATCTATTGAAACCCTTTTTTAGTCATCAAACTAGCATTTCTCTCAGAAGTAATGGTAAAAATTGTACTAAAAAGGCTCTCTGAAACATGTTTTTTAAGGCTGAGTAAAGTCTTGTTGTGCTTTCTGAAGATGACACAGGGATGTTTTGGGGGATACAGTTCTACAATGATTTGATACTCACATCAGGAGAAAGAGGGAATGTTCAAACAGAGATGCTTCTCCAAAAAGATTCAGAAATTTTCACTTTCAGAGAAGGATGGGCGTTCCCAAGAAGAATTTTGTTCAATGGGGATGAATGTGTAATGCCACCTCCAGACCAATATCCAAGGCTCCCAAATGAAGCTCACAGGGCAATGGCCATGGCCGCCACGTTCAAGGTTTTATTCTTTTTTTCTCTCTGTATTCTTATAACAGAGGAATTCAGTAGATGACAGTGCAATGGAAGTTACAAGCAGCGAGTATAGCACAGGTTTGCGTTTTATTTGCATATGGTTCTGATGAGAATTTTAGCTGAGACGATAAGTTTTTCTCGTTCCCTATTATTGTCATTGTTTTTAGACATTATTCTTCGAACTTTTTTAAAGGTGACCAAAATCAGTCCCGTACAAATTGA

mRNA sequence

ATGTTTTACAGGTCAGGTGAAACTCCTTCTGTGTTGCAGCTTCCACATGAACACTACACTGCTGAAGTAGAACCATTGGTGAGGTGTTCACAGCATATGTGCCCAATAAGGGTGCATTGGCATGTGAAACAGAGCTATACACAGTATTGGAGGGTAAAGATAACTATCACAAATCTAAACTTTGCCAAGAACTACTCTCAATGGAGCTTAGTAGTGTTGCATCCCAACTTGAGGAATATTACTCAAGTTTTCAGCTTCAACTACAGCCCTCTCAATCAATATGGTCACATAAATGACACAGGGATGTTTTGGGGGATACAGTTCTACAATGATTTGATACTCACATCAGGAGAAAGAGGGAATGTTCAAACAGAGATGCTTCTCCAAAAAGATTCAGAAATTTTCACTTTCAGAGAAGGATGGGCGTTCCCAAGAAGAATTTTGTTCAATGGGGATGAATGTGTAATGCCACCTCCAGACCAATATCCAAGGCTCCCAAATGAAGCTCACAGGGCAATGGCCATGGCCGCCACGTTCAAGAGGAATTCAGTAGATGACAGTGCAATGGAAGTTACAAGCAGCGAGTATAGCACAGGTGACCAAAATCAGTCCCGTACAAATTGA

Coding sequence (CDS)

ATGTTTTACAGGTCAGGTGAAACTCCTTCTGTGTTGCAGCTTCCACATGAACACTACACTGCTGAAGTAGAACCATTGGTGAGGTGTTCACAGCATATGTGCCCAATAAGGGTGCATTGGCATGTGAAACAGAGCTATACACAGTATTGGAGGGTAAAGATAACTATCACAAATCTAAACTTTGCCAAGAACTACTCTCAATGGAGCTTAGTAGTGTTGCATCCCAACTTGAGGAATATTACTCAAGTTTTCAGCTTCAACTACAGCCCTCTCAATCAATATGGTCACATAAATGACACAGGGATGTTTTGGGGGATACAGTTCTACAATGATTTGATACTCACATCAGGAGAAAGAGGGAATGTTCAAACAGAGATGCTTCTCCAAAAAGATTCAGAAATTTTCACTTTCAGAGAAGGATGGGCGTTCCCAAGAAGAATTTTGTTCAATGGGGATGAATGTGTAATGCCACCTCCAGACCAATATCCAAGGCTCCCAAATGAAGCTCACAGGGCAATGGCCATGGCCGCCACGTTCAAGAGGAATTCAGTAGATGACAGTGCAATGGAAGTTACAAGCAGCGAGTATAGCACAGGTGACCAAAATCAGTCCCGTACAAATTGA

Protein sequence

MFYRSGETPSVLQLPHEHYTAEVEPLVRCSQHMCPIRVHWHVKQSYTQYWRVKITITNLNFAKNYSQWSLVVLHPNLRNITQVFSFNYSPLNQYGHINDTGMFWGIQFYNDLILTSGERGNVQTEMLLQKDSEIFTFREGWAFPRRILFNGDECVMPPPDQYPRLPNEAHRAMAMAATFKRNSVDDSAMEVTSSEYSTGDQNQSRTN

Homology

[Close]

BLAST of Carg13198 vs. NCBI nr
Match: KAG7031032.1 (COBRA-like protein 6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 435.3 bits (1118), Expect = 3.0e-118
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0


Query: 1   MFYRSGETPSVLQLPHEHYTAEVEPLVRCSQHMCPIRVHWHVKQSYTQYWRVKITITNLN 60
           MFYRSGETPSVLQLPHEHYTAEVEPLVRCSQHMCPIRVHWHVKQSYTQYWRVKITITNLN
Sbjct: 1   MFYRSGETPSVLQLPHEHYTAEVEPLVRCSQHMCPIRVHWHVKQSYTQYWRVKITITNLN 60

Query: 61  FAKNYSQWSLVVLHPNLRNITQVFSFNYSPLNQYGHINDTGMFWGIQFYNDLILTSGERG 120
           FAKNYSQWSLVVLHPNLRNITQVFSFNYSPLNQYGHINDTGMFWGIQFYNDLILTSGERG
Sbjct: 61  FAKNYSQWSLVVLHPNLRNITQVFSFNYSPLNQYGHINDTGMFWGIQFYNDLILTSGERG 120

Query: 121 NVQTEMLLQKDSEIFTFREGWAFPRRILFNGDECVMPPPDQYPRLPNEAHRAMAMAATFK 180
           NVQTEMLLQKDSEIFTFREGWAFPRRILFNGDECVMPPPDQYPRLPNEAHRAMAMAATFK
Sbjct: 121 NVQTEMLLQKDSEIFTFREGWAFPRRILFNGDECVMPPPDQYPRLPNEAHRAMAMAATFK 180

Query: 181 RNSVDDSAMEVTSSEYSTGDQNQSRTN 208
           RNSVDDSAMEVTSSEYSTGDQNQSRTN
Sbjct: 181 RNSVDDSAMEVTSSEYSTGDQNQSRTN 207

[Close]

BLAST of Carg13198 vs. NCBI nr
Match: XP_023533604.1 (COBRA-like protein 6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 378.6 bits (971), Expect = 3.4e-101
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 5   SGETPSVLQLPHEHYTAEVEPLVRCSQHMCPIRVHWHVKQSYTQYWRVKITITNLNFAKN 64
           SGETPSVLQLPHEHYTAEVEPLVRCSQHMCPIRVHWHVKQSYTQYWRVKITITNLNFAKN
Sbjct: 271 SGETPSVLQLPHEHYTAEVEPLVRCSQHMCPIRVHWHVKQSYTQYWRVKITITNLNFAKN 330

Query: 65  YSQWSLVVLHPNLRNITQVFSFNYSPLNQYGHINDTGMFWGIQFYNDLILTSGERGNVQT 124
           YSQWSLVVLHPNLRNITQVFSFNYSPLNQYGHINDTGMFWGIQFYNDLILTSGERGNVQT
Sbjct: 331 YSQWSLVVLHPNLRNITQVFSFNYSPLNQYGHINDTGMFWGIQFYNDLILTSGERGNVQT 390

Query: 125 EMLLQKDSEIFTFREGWAFPRRILFNGDECVMPPPDQYPRLPNEAHRAMAMAATFK 181
           EMLLQKDSEIFTFREGWAFPRRILFNGDECVMPPPDQYPRLPNEAHRAMAMAATFK
Sbjct: 391 EMLLQKDSEIFTFREGWAFPRRILFNGDECVMPPPDQYPRLPNEAHRAMAMAATFK 446

[Close]

BLAST of Carg13198 vs. NCBI nr
Match: XP_022942251.1 (COBRA-like protein 6 [Cucurbita moschata])

HSP 1 Score: 378.6 bits (971), Expect = 3.4e-101
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 5   SGETPSVLQLPHEHYTAEVEPLVRCSQHMCPIRVHWHVKQSYTQYWRVKITITNLNFAKN 64
           SGETPSVLQLPHEHYTAEVEPLVRCSQHMCPIRVHWHVKQSYTQYWRVKITITNLNFAKN
Sbjct: 271 SGETPSVLQLPHEHYTAEVEPLVRCSQHMCPIRVHWHVKQSYTQYWRVKITITNLNFAKN 330

Query: 65  YSQWSLVVLHPNLRNITQVFSFNYSPLNQYGHINDTGMFWGIQFYNDLILTSGERGNVQT 124
           YSQWSLVVLHPNLRNITQVFSFNYSPLNQYGHINDTGMFWGIQFYNDLILTSGERGNVQT
Sbjct: 331 YSQWSLVVLHPNLRNITQVFSFNYSPLNQYGHINDTGMFWGIQFYNDLILTSGERGNVQT 390

Query: 125 EMLLQKDSEIFTFREGWAFPRRILFNGDECVMPPPDQYPRLPNEAHRAMAMAATFK 181
           EMLLQKDSEIFTFREGWAFPRRILFNGDECVMPPPDQYPRLPNEAHRAMAMAATFK
Sbjct: 391 EMLLQKDSEIFTFREGWAFPRRILFNGDECVMPPPDQYPRLPNEAHRAMAMAATFK 446

[Close]

BLAST of Carg13198 vs. NCBI nr
Match: KAG6600373.1 (COBRA-like protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 377.1 bits (967), Expect = 9.8e-101
Identity = 175/176 (99.43%), Postives = 175/176 (99.43%), Query Frame = 0


Query: 5   SGETPSVLQLPHEHYTAEVEPLVRCSQHMCPIRVHWHVKQSYTQYWRVKITITNLNFAKN 64
           SGETPSVLQLPHEHYTAEVEPLVRCSQHMCPIRVHWHVKQSYTQYWRVKITITNLNFAKN
Sbjct: 211 SGETPSVLQLPHEHYTAEVEPLVRCSQHMCPIRVHWHVKQSYTQYWRVKITITNLNFAKN 270

Query: 65  YSQWSLVVLHPNLRNITQVFSFNYSPLNQYGHINDTGMFWGIQFYNDLILTSGERGNVQT 124
           YSQWSLVVLHPN RNITQVFSFNYSPLNQYGHINDTGMFWGIQFYNDLILTSGERGNVQT
Sbjct: 271 YSQWSLVVLHPNFRNITQVFSFNYSPLNQYGHINDTGMFWGIQFYNDLILTSGERGNVQT 330

Query: 125 EMLLQKDSEIFTFREGWAFPRRILFNGDECVMPPPDQYPRLPNEAHRAMAMAATFK 181
           EMLLQKDSEIFTFREGWAFPRRILFNGDECVMPPPDQYPRLPNEAHRAMAMAATFK
Sbjct: 331 EMLLQKDSEIFTFREGWAFPRRILFNGDECVMPPPDQYPRLPNEAHRAMAMAATFK 386

[Close]

BLAST of Carg13198 vs. NCBI nr
Match: XP_022980772.1 (COBRA-like protein 6 [Cucurbita maxima])

HSP 1 Score: 375.6 bits (963), Expect = 2.8e-100
Identity = 175/176 (99.43%), Postives = 175/176 (99.43%), Query Frame = 0


Query: 5   SGETPSVLQLPHEHYTAEVEPLVRCSQHMCPIRVHWHVKQSYTQYWRVKITITNLNFAKN 64
           SGETPSVLQLPHEHYTAEVEPLVRCSQHMCPIRVHWHVKQSYTQYWRVKITITNLNFAKN
Sbjct: 271 SGETPSVLQLPHEHYTAEVEPLVRCSQHMCPIRVHWHVKQSYTQYWRVKITITNLNFAKN 330

Query: 65  YSQWSLVVLHPNLRNITQVFSFNYSPLNQYGHINDTGMFWGIQFYNDLILTSGERGNVQT 124
           YSQWSLVVLHPNLRNITQVFSFNYSPLNQYGHINDTGMFWGIQFYNDLILTSGERGNVQT
Sbjct: 331 YSQWSLVVLHPNLRNITQVFSFNYSPLNQYGHINDTGMFWGIQFYNDLILTSGERGNVQT 390

Query: 125 EMLLQKDSEIFTFREGWAFPRRILFNGDECVMPPPDQYPRLPNEAHRAMAMAATFK 181
           EMLLQKDSEIFTFREGWAFPRRILFNGDECVMPPPDQYPRLPNEA RAMAMAATFK
Sbjct: 391 EMLLQKDSEIFTFREGWAFPRRILFNGDECVMPPPDQYPRLPNEARRAMAMAATFK 446

[Close]

BLAST of Carg13198 vs. ExPASy Swiss-Prot
Match: O04500 (COBRA-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=COBL6 PE=2 SV=2)

HSP 1 Score: 250.0 bits (637), Expect = 2.4e-65
Identity = 114/182 (62.64%), Postives = 137/182 (75.27%), Query Frame = 0


Query: 4   RSGETPSVLQLPHEHYTAEVEPLVRCSQHMCPIRVHWHVKQSYTQYWRVKITITNLNFAK 63
           + GE P  L+  H+    EV P+V+CS HMCPIR+HWHVK +Y +YWRVKIT TN N  K
Sbjct: 261 KDGELPPYLEQKHDP-DEEVSPVVKCSDHMCPIRIHWHVKVNYREYWRVKITATNFNTMK 320

Query: 64  NYSQWSLVVLHPNLRNITQVFSFNYSPLNQY-GHINDTGMFWGIQFYNDLILTSGERGNV 123
           NY+ W+LVVLHPNL+++ QVFSFNY  L  Y   INDTGMFWG+QFYND++L  G+ GNV
Sbjct: 321 NYTNWNLVVLHPNLKSVQQVFSFNYKSLTPYQNSINDTGMFWGVQFYNDVLLQEGKIGNV 380

Query: 124 QTEMLLQKDSEIFTFREGWAFPRRILFNGDECVMPPPDQYPRLPNEAHRAMAMAATFKRN 183
           QTE+LL+KD   FTFREGWAFPRRILFNGDECVMP PD +PRLP  AH + + +A     
Sbjct: 381 QTELLLKKDMGNFTFREGWAFPRRILFNGDECVMPSPDDFPRLPKSAHSSSSSSAVISSV 440

Query: 184 SV 185
           SV
Sbjct: 441 SV 441

[Close]

BLAST of Carg13198 vs. ExPASy Swiss-Prot
Match: Q6Z4G8 (COBRA-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=BC1L6 PE=2 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 1.6e-61
Identity = 100/169 (59.17%), Postives = 128/169 (75.74%), Query Frame = 0


Query: 6   GETPSVLQLPHEHYTAEVEPLVRCSQHMCPIRVHWHVKQSYTQYWRVKITITNLNFAKNY 65
           G +P +  + + H    + PLV+C+ HMCPIRVHWHVK +Y +YWRVKIT+TN N+  NY
Sbjct: 258 GNSPYLASVVNTHNKDSLTPLVQCTSHMCPIRVHWHVKVNYKEYWRVKITVTNFNYRMNY 317

Query: 66  SQWSLVVLHPNLRNITQVFSFNYSPLNQYGHINDTGMFWGIQFYNDLILTSGERGNVQTE 125
           SQW+LV  HP+  N+T +FSFNY  LN YG INDT M WGI++YNDL++T+G  GNVQ+E
Sbjct: 318 SQWNLVTQHPSFDNLTTIFSFNYKSLNPYGVINDTAMLWGIKYYNDLLMTAGPDGNVQSE 377

Query: 126 MLLQKDSEIFTFREGWAFPRRILFNGDECVMPPPDQYPRLPNEAHRAMA 175
           +L +KD + FTF +GWAFPRR+ FNGD CVMPPPD YP LPN + R M+
Sbjct: 378 LLFKKDPKSFTFEKGWAFPRRVYFNGDNCVMPPPDAYPWLPNASTRVMS 426

[Close]

BLAST of Carg13198 vs. ExPASy Swiss-Prot
Match: Q9SRT7 (COBRA-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=COBL1 PE=2 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 2.7e-61
Identity = 99/154 (64.29%), Postives = 122/154 (79.22%), Query Frame = 0


Query: 14  LPHEHYTAEVEPLVRCSQHMCPIRVHWHVKQSYTQYWRVKITITNLNFAKNYSQWSLVVL 73
           +P+    A + PLV+C++HMCP+R+HWHVK +Y QYWRVK+TITN N+  NYSQW+LVV 
Sbjct: 273 IPNPGKNAYIPPLVQCTKHMCPVRIHWHVKVNYKQYWRVKVTITNFNYNMNYSQWNLVVQ 332

Query: 74  HPNLRNITQVFSFNYSPLNQYGHINDTGMFWGIQFYNDLILTSGERGNVQTEMLLQKDSE 133
           HPN  N+TQ FSFNY PL  Y  INDTG+ WGI+FYNDL++ +G  GNVQ+E+L QK++ 
Sbjct: 333 HPNFDNLTQTFSFNYKPLTPYASINDTGILWGIKFYNDLLMQAGPFGNVQSELLFQKEAS 392

Query: 134 IFTFREGWAFPRRILFNGDECVMPPPDQYPRLPN 168
            FTF +GWAFPRRI FNGD CVMPPPD YP LPN
Sbjct: 393 AFTFEKGWAFPRRIYFNGDNCVMPPPDSYPWLPN 426

[Close]

BLAST of Carg13198 vs. ExPASy Swiss-Prot
Match: Q7XR91 (COBRA-like protein 7 OS=Oryza sativa subsp. japonica OX=39947 GN=BC1LP1 PE=3 SV=2)

HSP 1 Score: 230.7 bits (587), Expect = 1.5e-59
Identity = 102/155 (65.81%), Postives = 123/155 (79.35%), Query Frame = 0


Query: 23  VEPLVRCSQHMCPIRVHWHVKQSYTQYWRVKITITNLNFAKNYSQWSLVVLHPNLRNITQ 82
           V P+ RC+ HMCP+RVHWHVK SY +YWRVK+TITN N  KNYS W+LVV HPNLR++TQ
Sbjct: 271 VAPVFRCTDHMCPVRVHWHVKISYREYWRVKVTITNYNQVKNYSDWNLVVQHPNLRSLTQ 330

Query: 83  VFSFNYSPLNQYGHINDTGMFWGIQFYNDLILTSGERGNVQTEMLLQKDSEIFTFREGWA 142
           +FSFNY PL +YG +NDTGMFWGIQ+YN+++L   + GNVQTEM+L+KD   FTF  GWA
Sbjct: 331 LFSFNYQPLIEYGTLNDTGMFWGIQYYNEMML---QDGNVQTEMILKKDKSDFTFSGGWA 390

Query: 143 FPRRILFNGDECVMPPPDQYPRLPNEAHRAMAMAA 178
           FPRR+ F+G ECVMPPPDQYP LPN    +   AA
Sbjct: 391 FPRRVYFDGHECVMPPPDQYPLLPNGGPDSRVSAA 422

[Close]

BLAST of Carg13198 vs. ExPASy Swiss-Prot
Match: Q60E70 (COBRA-like protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=BC1L4 PE=2 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 4.3e-59
Identity = 97/145 (66.90%), Postives = 118/145 (81.38%), Query Frame = 0


Query: 24  EPLVRCSQHMCPIRVHWHVKQSYTQYWRVKITITNLNFAKNYSQWSLVVLHPNLRNITQV 83
           +PLV+C+ HMCPIR+HWHVK +Y +YWRVKITITN N+  NY+QW+LV  HPN  NITQ+
Sbjct: 286 QPLVQCTSHMCPIRIHWHVKLNYKEYWRVKITITNFNYRMNYTQWNLVAQHPNFNNITQL 345

Query: 84  FSFNYSPLNQYG-HINDTGMFWGIQFYNDLILTSGERGNVQTEMLLQKDSEIFTFREGWA 143
           FSFNY PL  YG  INDT MFWG++FYNDL++ +G  GN Q+E+LL+KDS+ FTF +GWA
Sbjct: 346 FSFNYKPLTPYGSKINDTAMFWGVKFYNDLLMQAGPLGNAQSELLLRKDSKDFTFDKGWA 405

Query: 144 FPRRILFNGDECVMPPPDQYPRLPN 168
           FP R+ FNGD CVMPPPD YP LPN
Sbjct: 406 FPHRVYFNGDNCVMPPPDAYPWLPN 430

[Close]

BLAST of Carg13198 vs. ExPASy TrEMBL
Match: A0A6J1FND0 (COBRA-like protein OS=Cucurbita moschata OX=3662 GN=LOC111447357 PE=3 SV=1)

HSP 1 Score: 378.6 bits (971), Expect = 1.6e-101
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 5   SGETPSVLQLPHEHYTAEVEPLVRCSQHMCPIRVHWHVKQSYTQYWRVKITITNLNFAKN 64
           SGETPSVLQLPHEHYTAEVEPLVRCSQHMCPIRVHWHVKQSYTQYWRVKITITNLNFAKN
Sbjct: 271 SGETPSVLQLPHEHYTAEVEPLVRCSQHMCPIRVHWHVKQSYTQYWRVKITITNLNFAKN 330

Query: 65  YSQWSLVVLHPNLRNITQVFSFNYSPLNQYGHINDTGMFWGIQFYNDLILTSGERGNVQT 124
           YSQWSLVVLHPNLRNITQVFSFNYSPLNQYGHINDTGMFWGIQFYNDLILTSGERGNVQT
Sbjct: 331 YSQWSLVVLHPNLRNITQVFSFNYSPLNQYGHINDTGMFWGIQFYNDLILTSGERGNVQT 390

Query: 125 EMLLQKDSEIFTFREGWAFPRRILFNGDECVMPPPDQYPRLPNEAHRAMAMAATFK 181
           EMLLQKDSEIFTFREGWAFPRRILFNGDECVMPPPDQYPRLPNEAHRAMAMAATFK
Sbjct: 391 EMLLQKDSEIFTFREGWAFPRRILFNGDECVMPPPDQYPRLPNEAHRAMAMAATFK 446

[Close]

BLAST of Carg13198 vs. ExPASy TrEMBL
Match: A0A6J1IS70 (COBRA-like protein OS=Cucurbita maxima OX=3661 GN=LOC111480058 PE=3 SV=1)

HSP 1 Score: 375.6 bits (963), Expect = 1.4e-100
Identity = 175/176 (99.43%), Postives = 175/176 (99.43%), Query Frame = 0


Query: 5   SGETPSVLQLPHEHYTAEVEPLVRCSQHMCPIRVHWHVKQSYTQYWRVKITITNLNFAKN 64
           SGETPSVLQLPHEHYTAEVEPLVRCSQHMCPIRVHWHVKQSYTQYWRVKITITNLNFAKN
Sbjct: 271 SGETPSVLQLPHEHYTAEVEPLVRCSQHMCPIRVHWHVKQSYTQYWRVKITITNLNFAKN 330

Query: 65  YSQWSLVVLHPNLRNITQVFSFNYSPLNQYGHINDTGMFWGIQFYNDLILTSGERGNVQT 124
           YSQWSLVVLHPNLRNITQVFSFNYSPLNQYGHINDTGMFWGIQFYNDLILTSGERGNVQT
Sbjct: 331 YSQWSLVVLHPNLRNITQVFSFNYSPLNQYGHINDTGMFWGIQFYNDLILTSGERGNVQT 390

Query: 125 EMLLQKDSEIFTFREGWAFPRRILFNGDECVMPPPDQYPRLPNEAHRAMAMAATFK 181
           EMLLQKDSEIFTFREGWAFPRRILFNGDECVMPPPDQYPRLPNEA RAMAMAATFK
Sbjct: 391 EMLLQKDSEIFTFREGWAFPRRILFNGDECVMPPPDQYPRLPNEARRAMAMAATFK 446

[Close]

BLAST of Carg13198 vs. ExPASy TrEMBL
Match: A0A6J1C3M6 (COBRA-like protein OS=Momordica charantia OX=3673 GN=LOC111008188 PE=3 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 6.9e-92
Identity = 155/171 (90.64%), Postives = 168/171 (98.25%), Query Frame = 0


Query: 4   RSGETPSVLQLPHEHYTAEVEPLVRCSQHMCPIRVHWHVKQSYTQYWRVKITITNLNFAK 63
           + GETPSVLQLPHEH+T+EVEPLVRCSQHMCPIRVHWHVKQSYTQYWRVKITITNLNFAK
Sbjct: 254 KPGETPSVLQLPHEHHTSEVEPLVRCSQHMCPIRVHWHVKQSYTQYWRVKITITNLNFAK 313

Query: 64  NYSQWSLVVLHPNLRNITQVFSFNYSPLNQYGHINDTGMFWGIQFYNDLILTSGERGNVQ 123
           NYSQW+LVV+HPNLRN+TQVFSFNYSPLNQYG+INDTGMFWGI FYNDL+LTSG+ GNVQ
Sbjct: 314 NYSQWNLVVMHPNLRNVTQVFSFNYSPLNQYGNINDTGMFWGIHFYNDLLLTSGDTGNVQ 373

Query: 124 TEMLLQKDSEIFTFREGWAFPRRILFNGDECVMPPPDQYPRLPNEAHRAMA 175
           +EMLL+KDSEIFTFREGWAFPRRILFNGDECVMPPPDQYPRLPN+AH+AMA
Sbjct: 374 SEMLLRKDSEIFTFREGWAFPRRILFNGDECVMPPPDQYPRLPNKAHKAMA 424

[Close]

BLAST of Carg13198 vs. ExPASy TrEMBL
Match: A0A0A0L6L8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G225840 PE=3 SV=1)

HSP 1 Score: 344.4 bits (882), Expect = 3.4e-91
Identity = 156/170 (91.76%), Postives = 165/170 (97.06%), Query Frame = 0


Query: 4   RSGETPSVLQLPHEHYTAEVEPLVRCSQHMCPIRVHWHVKQSYTQYWRVKITITNLNFAK 63
           +SGE PSVLQLPHEH TAEVE LVRCSQHMCPIRVHWHVKQSYTQYWRVKITITNLNFAK
Sbjct: 170 KSGEAPSVLQLPHEHNTAEVEALVRCSQHMCPIRVHWHVKQSYTQYWRVKITITNLNFAK 229

Query: 64  NYSQWSLVVLHPNLRNITQVFSFNYSPLNQYGHINDTGMFWGIQFYNDLILTSGERGNVQ 123
           NYS W+LVV+HPNLRNITQVFSFNYSPLNQYG+INDTGMFWGI FYNDL+LTSGERGNVQ
Sbjct: 230 NYSDWNLVVMHPNLRNITQVFSFNYSPLNQYGNINDTGMFWGIHFYNDLLLTSGERGNVQ 289

Query: 124 TEMLLQKDSEIFTFREGWAFPRRILFNGDECVMPPPDQYPRLPNEAHRAM 174
           TE+LLQKDSEIFTFREGWAFPRRI+FNGDECVMPPPDQYPRLPN+AHR+M
Sbjct: 290 TEILLQKDSEIFTFREGWAFPRRIMFNGDECVMPPPDQYPRLPNKAHRSM 339

[Close]

BLAST of Carg13198 vs. ExPASy TrEMBL
Match: A0A5D3CLA0 (COBRA-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G00360 PE=3 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 1.3e-90
Identity = 156/168 (92.86%), Postives = 162/168 (96.43%), Query Frame = 0


Query: 6   GETPSVLQLPHEHYTAEVEPLVRCSQHMCPIRVHWHVKQSYTQYWRVKITITNLNFAKNY 65
           GE PSVLQLPHEH TAEVEPLVRCSQHMCPIRVHWHVKQSYT YWR KITITNLNFAKNY
Sbjct: 215 GEAPSVLQLPHEHNTAEVEPLVRCSQHMCPIRVHWHVKQSYTLYWRAKITITNLNFAKNY 274

Query: 66  SQWSLVVLHPNLRNITQVFSFNYSPLNQYGHINDTGMFWGIQFYNDLILTSGERGNVQTE 125
           S W+LVV+HPNLRNITQVFSFNYSPLNQYG+INDTGMFWGI FYNDL+LTSGERGNVQTE
Sbjct: 275 SDWNLVVMHPNLRNITQVFSFNYSPLNQYGNINDTGMFWGIHFYNDLLLTSGERGNVQTE 334

Query: 126 MLLQKDSEIFTFREGWAFPRRILFNGDECVMPPPDQYPRLPNEAHRAM 174
           +LLQKDSEIFTFREGWAFPRRILFNGDECVMPPPDQYPRLPN+AHRAM
Sbjct: 335 ILLQKDSEIFTFREGWAFPRRILFNGDECVMPPPDQYPRLPNKAHRAM 382

[Close]

BLAST of Carg13198 vs. TAIR 10
Match: AT1G09790.1 (COBRA-like protein 6 precursor )

HSP 1 Score: 250.0 bits (637), Expect = 1.7e-66
Identity = 114/182 (62.64%), Postives = 137/182 (75.27%), Query Frame = 0


Query: 4   RSGETPSVLQLPHEHYTAEVEPLVRCSQHMCPIRVHWHVKQSYTQYWRVKITITNLNFAK 63
           + GE P  L+  H+    EV P+V+CS HMCPIR+HWHVK +Y +YWRVKIT TN N  K
Sbjct: 261 KDGELPPYLEQKHDP-DEEVSPVVKCSDHMCPIRIHWHVKVNYREYWRVKITATNFNTMK 320

Query: 64  NYSQWSLVVLHPNLRNITQVFSFNYSPLNQY-GHINDTGMFWGIQFYNDLILTSGERGNV 123
           NY+ W+LVVLHPNL+++ QVFSFNY  L  Y   INDTGMFWG+QFYND++L  G+ GNV
Sbjct: 321 NYTNWNLVVLHPNLKSVQQVFSFNYKSLTPYQNSINDTGMFWGVQFYNDVLLQEGKIGNV 380

Query: 124 QTEMLLQKDSEIFTFREGWAFPRRILFNGDECVMPPPDQYPRLPNEAHRAMAMAATFKRN 183
           QTE+LL+KD   FTFREGWAFPRRILFNGDECVMP PD +PRLP  AH + + +A     
Sbjct: 381 QTELLLKKDMGNFTFREGWAFPRRILFNGDECVMPSPDDFPRLPKSAHSSSSSSAVISSV 440

Query: 184 SV 185
           SV
Sbjct: 441 SV 441

[Close]

BLAST of Carg13198 vs. TAIR 10
Match: AT3G02210.1 (COBRA-like protein 1 precursor )

HSP 1 Score: 236.5 bits (602), Expect = 1.9e-62
Identity = 99/154 (64.29%), Postives = 122/154 (79.22%), Query Frame = 0


Query: 14  LPHEHYTAEVEPLVRCSQHMCPIRVHWHVKQSYTQYWRVKITITNLNFAKNYSQWSLVVL 73
           +P+    A + PLV+C++HMCP+R+HWHVK +Y QYWRVK+TITN N+  NYSQW+LVV 
Sbjct: 273 IPNPGKNAYIPPLVQCTKHMCPVRIHWHVKVNYKQYWRVKVTITNFNYNMNYSQWNLVVQ 332

Query: 74  HPNLRNITQVFSFNYSPLNQYGHINDTGMFWGIQFYNDLILTSGERGNVQTEMLLQKDSE 133
           HPN  N+TQ FSFNY PL  Y  INDTG+ WGI+FYNDL++ +G  GNVQ+E+L QK++ 
Sbjct: 333 HPNFDNLTQTFSFNYKPLTPYASINDTGILWGIKFYNDLLMQAGPFGNVQSELLFQKEAS 392

Query: 134 IFTFREGWAFPRRILFNGDECVMPPPDQYPRLPN 168
            FTF +GWAFPRRI FNGD CVMPPPD YP LPN
Sbjct: 393 AFTFEKGWAFPRRIYFNGDNCVMPPPDSYPWLPN 426

[Close]

BLAST of Carg13198 vs. TAIR 10
Match: AT5G60920.1 (COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family )

HSP 1 Score: 229.2 bits (583), Expect = 3.1e-60
Identity = 101/163 (61.96%), Postives = 123/163 (75.46%), Query Frame = 0


Query: 10  SVLQLPHEHYTAEVEPLVRCSQHMCPIRVHWHVKQSYTQYWRVKITITNLNFAKNYSQWS 69
           SV+  P +  T  + PLV+C++HMCPIRVHWHVKQ+Y +YWRVKITITN N+  NY+QW+
Sbjct: 275 SVVSPPTKKGTV-LPPLVQCTRHMCPIRVHWHVKQNYKEYWRVKITITNFNYRLNYTQWN 334

Query: 70  LVVLHPNLRNITQVFSFNYSPLNQYGHINDTGMFWGIQFYNDLILTSGERGNVQTEMLLQ 129
           LV  HPNL NITQ+FSFNY  L  Y  +NDT M WG++FYND +  +G  GNVQ+E+L +
Sbjct: 335 LVAQHPNLDNITQIFSFNYKSLTPYAGLNDTAMLWGVKFYNDFLSEAGPLGNVQSEILFR 394

Query: 130 KDSEIFTFREGWAFPRRILFNGDECVMPPPDQYPRLPNEAHRA 173
           KD   FTF +GWAFPRRI FNGD CVMPPPD YP LPN   R+
Sbjct: 395 KDQSTFTFEKGWAFPRRIYFNGDNCVMPPPDSYPFLPNGGSRS 436

[Close]

BLAST of Carg13198 vs. TAIR 10
Match: AT3G29810.1 (COBRA-like protein 2 precursor )

HSP 1 Score: 228.4 bits (581), Expect = 5.2e-60
Identity = 98/145 (67.59%), Postives = 117/145 (80.69%), Query Frame = 0


Query: 23  VEPLVRCSQHMCPIRVHWHVKQSYTQYWRVKITITNLNFAKNYSQWSLVVLHPNLRNITQ 82
           +EPL++C+QHMCPIRVHWHVK SY +YWRVK+ ITN N+  NYSQW+LVV HPN  N+T+
Sbjct: 273 LEPLLQCTQHMCPIRVHWHVKTSYKEYWRVKVAITNFNYNMNYSQWNLVVQHPNFDNLTK 332

Query: 83  VFSFNYSPLNQYGHINDTGMFWGIQFYNDLILTSGERGNVQTEMLLQKDSEIFTFREGWA 142
           +FSFNY PLN Y +INDT M WGI+FYND +  +G  GNVQ+E+L QK+   FTF +GWA
Sbjct: 333 LFSFNYKPLNPYLNINDTAMLWGIKFYNDFLSQAGPVGNVQSELLFQKNPLEFTFEKGWA 392

Query: 143 FPRRILFNGDECVMPPPDQYPRLPN 168
           FPRRI FNGD CVMPPPD YP LPN
Sbjct: 393 FPRRIYFNGDNCVMPPPDSYPWLPN 417

[Close]

BLAST of Carg13198 vs. TAIR 10
Match: AT5G15630.1 (COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family )

HSP 1 Score: 228.0 bits (580), Expect = 6.8e-60
Identity = 92/145 (63.45%), Postives = 120/145 (82.76%), Query Frame = 0


Query: 25  PLVRCSQHMCPIRVHWHVKQSYTQYWRVKITITNLNFAKNYSQWSLVVLHPNLRNITQVF 84
           PL++C+ HMCP+RVHWHVK +Y  YWRVKI ITN N+  N++ W+L + HPNL N+TQVF
Sbjct: 267 PLLQCTHHMCPVRVHWHVKTNYKDYWRVKIAITNFNYRMNHTLWTLAIQHPNLNNVTQVF 326

Query: 85  SFNYSPLNQYGHINDTGMFWGIQFYNDLILTSGERGNVQTEMLLQKDSEIFTFREGWAFP 144
           SF+Y P++ YG INDTGMF+G +FYNDL++ +G  GNVQ+E+LLQKD + FTF++GWAFP
Sbjct: 327 SFDYKPVSPYGSINDTGMFYGTKFYNDLLMEAGPSGNVQSEVLLQKDQKTFTFKQGWAFP 386

Query: 145 RRILFNGDECVMPPPDQYPRLPNEA 170
           R++ FNGDEC++PPPD YP LPN A
Sbjct: 387 RKVYFNGDECMLPPPDSYPFLPNSA 411

The following BLAST results are available for this feature:

BLAST of Carg13198 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7031032.1	3.0e-118	100.00	COBRA-like protein 6, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023533604.1	3.4e-101	100.00	COBRA-like protein 6 [Cucurbita pepo subsp. pepo]	[more]
XP_022942251.1	3.4e-101	100.00	COBRA-like protein 6 [Cucurbita moschata]	[more]
KAG6600373.1	9.8e-101	99.43	COBRA-like protein 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022980772.1	2.8e-100	99.43	COBRA-like protein 6 [Cucurbita maxima]	[more]

BLAST of Carg13198 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O04500	2.4e-65	62.64	COBRA-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=COBL6 PE=2 SV=2	[more]
Q6Z4G8	1.6e-61	59.17	COBRA-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=BC1L6 PE=2 SV=1	[more]
Q9SRT7	2.7e-61	64.29	COBRA-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=COBL1 PE=2 SV=1	[more]
Q7XR91	1.5e-59	65.81	COBRA-like protein 7 OS=Oryza sativa subsp. japonica OX=39947 GN=BC1LP1 PE=3 SV=...	[more]
Q60E70	4.3e-59	66.90	COBRA-like protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=BC1L4 PE=2 SV=1	[more]

BLAST of Carg13198 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FND0	1.6e-101	100.00	COBRA-like protein OS=Cucurbita moschata OX=3662 GN=LOC111447357 PE=3 SV=1	[more]
A0A6J1IS70	1.4e-100	99.43	COBRA-like protein OS=Cucurbita maxima OX=3661 GN=LOC111480058 PE=3 SV=1	[more]
A0A6J1C3M6	6.9e-92	90.64	COBRA-like protein OS=Momordica charantia OX=3673 GN=LOC111008188 PE=3 SV=1	[more]
A0A0A0L6L8	3.4e-91	91.76	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G225840 PE=3 SV=1	[more]
A0A5D3CLA0	1.3e-90	92.86	COBRA-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G0...	[more]

BLAST of Carg13198 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G09790.1	1.7e-66	62.64	COBRA-like protein 6 precursor	[more]
AT3G02210.1	1.9e-62	64.29	COBRA-like protein 1 precursor	[more]
AT5G60920.1	3.1e-60	61.96	COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family	[more]
AT3G29810.1	5.2e-60	67.59	COBRA-like protein 2 precursor	[more]
AT5G15630.1	6.8e-60	63.45	COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 186..207
None	No IPR available	PANTHER	PTHR31673:SF30	COBRA-LIKE PROTEIN 6	coord: 21..173
IPR006918	COBRA, plant	PANTHER	PTHR31673	PROTEIN COBRA	coord: 21..173

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg13198-RA	Carg13198-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010215	cellulose microfibril organization
biological_process	GO:0052324	plant-type cell wall cellulose biosynthetic process
cellular_component	GO:0046658	anchored component of plasma membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0031225	anchored component of membrane
molecular_function	GO:0030246	carbohydrate binding