Carg19333 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg19333
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr03: 10066781 .. 10068142 (-)
RNA-Seq Expression	Carg19333
Synteny	Carg19333

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGGCGGTTTGAAAAAGAGAAAGGGGAGACGGAAAACCGAGTCTAATCAACCGAACACGTGGGCGGTGGAGATTGGTAGACCCAATCATCTGCTGGCTGAGCCGGAGCCGACGTGGTCGCACGTAGCCGGCCACAATCTTTTGGTAAGGGGACACGTGTTGGTACCCTTTGATTGTATCGTCAACGCTATTCAACTCCGTCGCGCCGGAGGCGGTTTCCGAAAGTGGACTTCTGCGGACAGCAGCTCCCTTGTCAACGTCACTGCGAGTTCCACCAAGTAAAGATTATTTTATCCGCAAATTCCATCGAGTTTGCTCCTAATCAATCGTGCCGCCCAATTGTTTCTAATTGCACAATTCACTCAACACTAATCAATTTGCTTTATCCGCACCTGAATTGACTACTCAATTTGTTATTCCCATTCCATTTCTTTTGGATTTTTTTCTTTTTCTAATCTCCGTGGAGCAAGCGGATCACCTACTGCAACGAATACTGGCTTCAAAAGCACTTCTCCCACAGAGAAACAGAGAGAGAAGAGACACCCAGGGTTAAGGCTCCGATCATCAACAGTGCTCTTTTGGTCGTCTTCTTCCCCGAGGTTATTTTGTTTCCCTATTTTTGGTTTGGGGACGCGATGGGGGGTACATACATTTTATTTTCTTTTTTGGATGGTTCTTTATAGATTACGAGCAGTTATTGATTTAACGTATGGGCCTTCATCGGTGTTGTTATGATTATTGCTCTTTTAATTCTGAAGAAACATAATTGATTGTGTTCTTCTTGTTGCTGCTAGTTGTTTCCTGTTGCGCTTGGACGTTTTTATGTAATATGTATTTGCCGAAGCAGTATATGGTCAATCATGGCAGCTTGTGATCAAGACTCGAGAGAATTTGAATTTGAGGGATCTAATTTTATAAGAAAATTTCATGAACATGCATCATAGAGCTATCTGGTTTGTAAGGATATAAATTTTGGGAACAGGTAGGATTATCAGCGTCAAGAAATTTATAAACTTAATCCGCATCCCTGCAATCCTTTGCGCGGAACTTTCTTTTATAGGTTGGCGAGTGCGGGAAGAATAATTTGGTGAACCTAAGTAAATTACCAGAATATAGTGATCATTTGGGGTTCTTGCGCCTTCTACTGTCATAGGGATGGCTTCAGAATTCTCAATCTATTTCGTATCATGAGACATTTGTTTTCTTTTGTATTGCACAGTTTCATCATTGGCAGATTTTTCTCTATTTTTGGTGTTTTATCCTTGTTCTTCATCAACATGAAATGATCCAATTATATCATGAAACAATAACCATTATTGTATTTCTCTATATAAGCAGGTGGAAAATAATAATGCCTGA

mRNA sequence

ATGGAAGGCGGTTTGAAAAAGAGAAAGGGGAGACGGAAAACCGAGTCTAATCAACCGAACACGTGGGCGGTGGAGATTGGTAGACCCAATCATCTGCTGGCTGAGCCGGAGCCGACGTGGTCGCACGTAGCCGGCCACAATCTTTTGGTAAGGGGACACGTGTTGGTACCCTTTGATTGTATCGTCAACGCTATTCAACTCCGTCGCGCCGGAGGCGGTTTCCGAAAGTGGACTTCTGCGGACAGCAGCTCCCTTGTCAACGTCACTGCGAGTTCCACCAACAAGCGGATCACCTACTGCAACGAATACTGGCTTCAAAAGCACTTCTCCCACAGAGAAACAGAGAGAGAAGAGACACCCAGGGTTAAGGCTCCGATCATCAACAGTGCTCTTTTGGTCGTCTTCTTCCCCGAGGTGGAAAATAATAATGCCTGA

Coding sequence (CDS)

ATGGAAGGCGGTTTGAAAAAGAGAAAGGGGAGACGGAAAACCGAGTCTAATCAACCGAACACGTGGGCGGTGGAGATTGGTAGACCCAATCATCTGCTGGCTGAGCCGGAGCCGACGTGGTCGCACGTAGCCGGCCACAATCTTTTGGTAAGGGGACACGTGTTGGTACCCTTTGATTGTATCGTCAACGCTATTCAACTCCGTCGCGCCGGAGGCGGTTTCCGAAAGTGGACTTCTGCGGACAGCAGCTCCCTTGTCAACGTCACTGCGAGTTCCACCAACAAGCGGATCACCTACTGCAACGAATACTGGCTTCAAAAGCACTTCTCCCACAGAGAAACAGAGAGAGAAGAGACACCCAGGGTTAAGGCTCCGATCATCAACAGTGCTCTTTTGGTCGTCTTCTTCCCCGAGGTGGAAAATAATAATGCCTGA

Protein sequence

MEGGLKKRKGRRKTESNQPNTWAVEIGRPNHLLAEPEPTWSHVAGHNLLVRGHVLVPFDCIVNAIQLRRAGGGFRKWTSADSSSLVNVTASSTNKRITYCNEYWLQKHFSHRETEREETPRVKAPIINSALLVVFFPEVENNNA

Homology

[Close]

BLAST of Carg19333 vs. NCBI nr
Match: KAG7034782.1 (hypothetical protein SDJN02_04514, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 300.4 bits (768), Expect = 8.1e-78
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MEGGLKKRKGRRKTESNQPNTWAVEIGRPNHLLAEPEPTWSHVAGHNLLVRGHVLVPFDC 60
           MEGGLKKRKGRRKTESNQPNTWAVEIGRPNHLLAEPEPTWSHVAGHNLLVRGHVLVPFDC
Sbjct: 1   MEGGLKKRKGRRKTESNQPNTWAVEIGRPNHLLAEPEPTWSHVAGHNLLVRGHVLVPFDC 60

Query: 61  IVNAIQLRRAGGGFRKWTSADSSSLVNVTASSTNKRITYCNEYWLQKHFSHRETEREETP 120
           IVNAIQLRRAGGGFRKWTSADSSSLVNVTASSTNKRITYCNEYWLQKHFSHRETEREETP
Sbjct: 61  IVNAIQLRRAGGGFRKWTSADSSSLVNVTASSTNKRITYCNEYWLQKHFSHRETEREETP 120

Query: 121 RVKAPIINSALLVVFFPEVENNNA 145
           RVKAPIINSALLVVFFPEVENNNA
Sbjct: 121 RVKAPIINSALLVVFFPEVENNNA 144

[Close]

BLAST of Carg19333 vs. NCBI nr
Match: KAG6581494.1 (hypothetical protein SDJN03_21496, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 243.0 bits (619), Expect = 1.5e-60
Identity = 124/144 (86.11%), Postives = 125/144 (86.81%), Query Frame = 0


Query: 1   MEGGLKKRKGRRKTESNQPNTWAVEIGRPNHLLAEPEPTWSHVAGHNLLVRGHVLVPFDC 60
           MEGGLKKRKGRRKTESNQPNTWAVEIGRPNHLLAEPEPTWSHVAGHNLLVRGHVLV FDC
Sbjct: 1   MEGGLKKRKGRRKTESNQPNTWAVEIGRPNHLLAEPEPTWSHVAGHNLLVRGHVLVSFDC 60

Query: 61  IVNAIQLRRAGGGFRKWTSADSSSLVNVTASSTNKRITYCNEYWLQKHFSHRETEREETP 120
           IVNAIQLRRAGGGFRKWTSADSSSLVNVTASST                  +ETEREETP
Sbjct: 61  IVNAIQLRRAGGGFRKWTSADSSSLVNVTASST------------------KETEREETP 120

Query: 121 RVKAPIINSALLVVFFPEVENNNA 145
           RVKAPIINSALLVVFFPEVENNNA
Sbjct: 121 RVKAPIINSALLVVFFPEVENNNA 126

The following BLAST results are available for this feature:

BLAST of Carg19333 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7034782.1	8.1e-78	100.00	hypothetical protein SDJN02_04514, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6581494.1	1.5e-60	86.11	hypothetical protein SDJN03_21496, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Carg19333 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg19333 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg19333 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19333-RA	Carg19333-RA	mRNA