Carg08959 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg08959
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Nucleolar protein 10
Location	Carg_Chr02: 9673234 .. 9677898 (+)
RNA-Seq Expression	Carg08959
Synteny	Carg08959

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCGCGATTCCTTGTCTCCCGCCATTTCCGTTCTAGGGTTTTTCGTCTGGTATTGATTTCTAAAACCCTCGAATATTTGTATATTTCATTTACAAAATTTTCTTCGAGTTAATCATGAATGTTATGCAACTGTTCTTTGTTAAGGGCTTTTGCATGAAGTTATGTGGAATGACTTGATTTTTCTCCAAAGATTTTCAGGTTTGAGTGTTTAGCAACGATGTATCTTCAGTTTTACATAAACGATAATGGCGACAAAGTCTACACCACAAAGGTTTATTTTCCTTCCTATTTTTTAGCTTTCTGTTTAATGGTTAATCGATGACTACCTATTTTCTCTGCTGGTCCGGGTTTGATTTTTATATCTTATATGCATAAACTGCGTTTGTAGTGCTGTTTAATTGAGATATAAATGACGTTAACTTCCATTCCAACTACGGAGTATTGGTCTTATTGAGTTTCCAATAAGCAGTGATTCTATGGACCCCCTGATTTTGAAGATAAGGAAGGTTTACTGAGCTTCAGTTTGGAGATTGGAACATTTATTTAATTCTATTTGTGCAGGCCTTCTTTTAAAAAAGATAAGAGCTATACCTATGTTGAGATGGAAGTAGATAGGCTACCATCATTCAGTGCCAGTGTGCAGTTTATATTTACATTGTATACCCATCCAATGGTTGATTAAATCTATAGTGACACCTTTGCTTAGAACGTCTTGATTTTCTGCAAAGTTGGCAGTTTGCTTAGAACTTCCGATCTTCCCTTCTTTCTTTCACCATATCATGATGGTAGATTAGAGTTACCTTGATCCTTCCCTGACATTGAGTGGGGAGAAGGTATTAGATTTTAGACGCCATTCTTTCTCTACTATTGGATTGGGTTTCACCACCAATGGTCTTCCATCATCACTGGCCCATTGCTTGGGACAAGTCTCTAGAGAAAGGAGAGCCTGGGTTTTGTAAGGACACTCAACTTCAGGATTCCTGTATCCCTGATTTACTTAGAAAATTTGATGGGTTGTTGAAGACACTATGCAAGCAATACATTTCTTCTGATAAGATCATTCCCTCATCATTAATGCAGGAATTTGGATGTACTCGTTCATGGCAATGTTTTCTTGCCATCCGAGTATGGTGGTTGTTTCTCCTCAGAGGTGCTATTTTGTTACCTCATTAAATTTGTAGATCCCTTTCTTATGTACCAAGTTTTTCAAGATCTTGTGGACTCTCAAAATTCAAAGCAATTCTAAGTATTTTGGCTGGGGTCCTTGCTCTTGAGGATGGAAAGCTGCTAGTACTTTGCAATGAATGTGTTCTTTCAAGTTTTTGTCTCTTTAGTGACACATTATTTTTATGAACACCATGGGAGATATTAAGCACCATTCCCTGTACACTGTGAAGCTGTGGATGGCTTTATGAACACCTTTAGCCTCTAGCGATGCTCACCTAACTCCTTTTCTGAAGGTTTAGATAAACTTTTATGAGTGTTCCATTTCTCTGATATTTCTTCAGACCAATACATCATCAATGGAAATCTTAAGGAAGCTGGGGCTGGAGGAGTTGGAGTCCCTTTAAAACTCATTCATCTTTCGAGTTTTTTGGAGATATTTCAAGGCCTGTAGAATTTACCCTGATTCTAATTATATCAATTTATGCGTTTGAATACATGATACATGTTGGAATGCTGTAAGATAATACTATAAGACCTTCAATGGATAAATTCTCCAAAATTATTTTTCCTTACTTCCACTAACCCTGTGGTTTCCATTTCCAATTTCTTTCAATGGTACAGACCTGCTCTCGTGCTACTCTTTTTTCCCTCCTTAACTCAATTGACAACTATAACACAATGTCGTTGCAAACTGCCAGCTTTGAGGCATAGACAAGATATTTTGTAACGACCCAGATCCACCGCTAGCAGATATTGTCCTCTTTGGGCTTTCCCTTTCGGGCTTCCCCTCAAGGCTTTAAAATGCATCTACTAGGGGAAGGTTTCCACACCCTTATAAAAGTTGATTTGTTCTCCTCCCCAACCAATGTGGGACATCACAATCCACCCCCCTTTAGGGCCCAACGTCCTTACTGGCACACCGCCTCGTGTCTACCCCCTTTCAGGGAACAACGAGAAGGCTGGCACATCATTCGATGACTGGCTTTGATACCATTTGTAATGACCCAAATCCACCGCTAGCAGATATTGTCCTCTTTGGGCTTTCCCTTTTGGGCTTCCCCTCAAGGCTTTAAAACGCGTCTACTAGGGGAAGGTTTTCACACCCTTACAAAGGGTGATTTGTTCTCCTCTCCAACCAATGTGGGACATCACATATTTATTGTTTAGGGTCTGGATTTTATTCAGCACCAACTAAATTCTAATGGGCCTGTGCTGAGTTTTTAGAGTTGATAGTTATTTTTTTTTTAAATTTATTTTTCATCTTTGGTAGAATTGTACATTTTGAAATGAAAACCATTTTTTTTCAATAATATACAAATGAGTCAACCCCTGCGTAAGCTTCAAGTACCTTGTACCCATTGTTAATTTCCTTGCTCTCTTTATACTTTAATATGTGATGTATGCTAAATTATTTAGTTTTCATTTTCCTCTATTGTACAGAAAGAATCGCCTCTAGGTTTGGTCACACAATCTGCTCATCCAGGTACTCTTGTGCATTATCTTCCTAGTATTGTTCCATCTCGTTAATATCAATGATTTTGGTAGGGAGAAAGCGCATGCTTGTAATATCTTGTTATCTTTGTCTTGTGGTTTATTTGAGTTGTAGTTGTGAAGATTGCAATTATACATTCTTGAGAATAGATTTTCCCTGTTGATAACGTAATTTACACCGTGCGGATGGCATTAGAGATAACTTAATTTATTCTCTATATTGTGTGATTGGCTTAGTTCAGATTTATCCCCCCCCTCCCACCCCCCCCCCCCCCCCAATGGGCATCTTGATTTTAGCAGCTTCAAACCTGATTACCTGTTTGTACATTTTCTGACTGCAGCCCGTTTCTCCCCTGATGACAAATACTCGAGGCAGAGAGTTCTTCTTAAGAAGCGATTTGGCTTGCTACCCACGCAGCATCCACCTCCAAAGTACTAAGCCGAGTGCGTTATCAAATCAGTTGATTCTTCTGTTTAGTCACCCCCCCAAATAGTAGATCGTGACTTGATGAAAGTTTGATCTGTGGCTTGTAATCGAGCTGTAAAGCACAAACCAATGTTGAACCTTTCTTTAAGCTTGGCTTTATATTGGCATCGAACTTTATTTTACCGAAAGCAAACTTATCTACTTTGAAGAACTGGTTAATGCAAGATGATGGACCTTTTTTTCATACTTTTTTCCCCACTTTTGTACAACATTGCAGTTGTCAAGCACCAATGTCAGCTGAACCTTTCTAAAGTTGTCCTTGTATGTGTATTTAACCTGATTTGCTAACAATCAATTGAGCCTAAGCCATAAGGTGGGAGTCCCCAATTCCTTCGGTTGGTTTTGAAGTTCAAGTTCCCTCTGTCCTGGTTTGCTGTCAAGACATATGCACCTGAAATTGGACGATTACAACTTGGGAGTTCATCTTGTCCACAGCTAAGAAGGTACGCAAGGTTCATTTTGTGATCCAGTGGTTGGCTGAACTACAATTAGATTAACAGGGTTATGTGCCTTTTATGGCCAGTGAATATGCCTTTTATTTCAGGATATTAGAATTTGAACCTTGAAAATGGGTTAGGACCTGAGAGTTTGGGCCTAAGTGGCCATATAATTTTGCTGAAGTGTAGCCAAGTGGTTTGGTATGCAAGCCTTCAGCCCCACCCAAGAAATAATGAACTGAAACAGATATATCATCATCATCATCAAGTATTTTGAATGGGGTTTGATGTCTCACATAATTTTGTCTTTCATAGGACTTGTTTAATAGTTAACTTAAGTGAGAAAGATATATCACATTAGTTTAATTAAAGTTGGAACATTTTAATATAAACACAAAGCGGGCCAAAGTTGTAGAATAAAGGCACATTTTCATGTGTAATAAACCGCGTTTGTCGAATTATTGTCGAATTAAAAGCGTCTTTTGCAGAAATGACGTTGTCGGTTGCGTTCCATGGAAACATGAAAAAGGAAATGTAGAAAAAGAAGAAATAAAATGCGAAATGAATCTTGTTGAAAGGATTGGTGGTAAGATTATCTTTGTTTATAGACATTGTTTTTAGAAAAGCAGGAGGAAGAACATGGCACCCAATGAAGAAGACAAAGACCAATAGCCCTTTTCTTAAATCACAAAAGCCATTCTAACACAGATCAATTTCTTTAATCTCCAAAAGATATGATTTGATATACGTGAGTCTAAATCAGGGAGAGTTTTTGGTCAAGTAATTTAACACAATTTCTTGTTATTATTATTACAATTCAAAATTAAATTTGACACAAAGTGATTATGAATGAAAAAAATAAATTTGACACAAAGTGATGATGAATGGGGCCATTAATAGAAATTTTTTATTCGATGTTATTTTAGCTTCACATCCATCGTGATGGTGATGATCCATGAACACTTACTCTCTCTTACTTTGAACTAAATATGGTTGAAATACAACATTTTATTTTTTATAAAAAATTATGAGACAAAACTTCTGCATCTTAATAATGCATCTTAATAATCTCTCAATTTCTC

mRNA sequence

CTTCGCGATTCCTTGTCTCCCGCCATTTCCGTTCTAGGGTTTTTCGTCTGGAATTTGGATGTACTCGTTCATGGCAATGTTTTCTTGCCATCCGAGTATGGTGGTTGTTTCTCCTCAGAGAAAGAATCGCCTCTAGGTTTGGTCACACAATCTGCTCATCCAGCCCGTTTCTCCCCTGATGACAAATACTCGAGGCAGAGAGTTCTTCTTAAGAAGCGATTTGGCTTGCTACCCACGCAGCATCCACCTCCAAAGTACTAAGCCGAGTGCGTTATCAAATCAGTTGATTCTTCTGTTTAGTCACCCCCCCAAATAGTAGATCGTGACTTGATGAAAGTTTGATCTGTGGCTTGTAATCGAGCTGTAAAGCACAAACCAATGTTGAACCTTTCTTTAAGCTTGGCTTTATATTGGCATCGAACTTTATTTTACCGAAAGCAAACTTATCTACTTTGAAGAACTGGTTAATGCAAGATGATGGACCTTTTTTTCATACTTTTTTCCCCACTTTTGTACAACATTGCAGTTGTCAAGCACCAATGTCAGCTGAACCTTTCTAAAGTTGTCCTTGTATGTGTATTTAACCTGATTTGCTAACAATCAATTGAGCCTAAGCCATAAGGTGGGAGTCCCCAATTCCTTCGGTTGGTTTTGAAGTTCAAGTTCCCTCTGTCCTGGTTTGCTGTCAAGACATATGCACCTGAAATTGGACGATTACAACTTGGGAGTTCATCTTGTCCACAGCTAAGAAGGTACGCAAGGTTCATTTTGTGATCCAGTGGTTGGCTGAACTACAATTAGATTAACAGGGTTATGTGCCTTTTATGGCCAGTGAATATGCCTTTTATTTCAGGATATTAGAATTTGAACCTTGAAAATGGGTTAGGACCTGAGAGTTTGGGCCTAAGTGGCCATATAATTTTGCTGAAGTGTAGCCAAGTGGTTTGGTATGCAAGCCTTCAGCCCCACCCAAGAAATAATGAACTGAAACAGATATATCATCATCATCATCAAGTATTTTGAATGGGGTTTGATGTCTCACATAATTTTGTCTTTCATAGGACTTGTTTAATAGTTAACTTAAGTGAGAAAGATATATCACATTAGTTTAATTAAAGTTGGAACATTTTAATATAAACACAAAGCGGGCCAAAGTTGTAGAATAAAGGCACATTTTCATGTGTAATAAACCGCGTTTGTCGAATTATTGTCGAATTAAAAGCGTCTTTTGCAGAAATGACGTTGTCGGTTGCGTTCCATGGAAACATGAAAAAGGAAATGTAGAAAAAGAAGAAATAAAATGCGAAATGAATCTTGTTGAAAGGATTGGTGGTAAGATTATCTTTGTTTATAGACATTGTTTTTAGAAAAGCAGGAGGAAGAACATGGCACCCAATGAAGAAGACAAAGACCAATAGCCCTTTTCTTAAATCACAAAAGCCATTCTAACACAGATCAATTTCTTTAATCTCCAAAAGATATGATTTGATATACGTGAGTCTAAATCAGGGAGAGTTTTTGGTCAAGTAATTTAACACAATTTCTTGTTATTATTATTACAATTCAAAATTAAATTTGACACAAAGTGATTATGAATGAAAAAAATAAATTTGACACAAAGTGATGATGAATGGGGCCATTAATAGAAATTTTTTATTCGATGTTATTTTAGCTTCACATCCATCGTGATGGTGATGATCCATGAACACTTACTCTCTCTTACTTTGAACTAAATATGGTTGAAATACAACATTTTATTTTTTATAAAAAATTATGAGACAAAACTTCTGCATCTTAATAATGCATCTTAATAATCTCTCAATTTCTC

Coding sequence (CDS)

CTTCGCGATTCCTTGTCTCCCGCCATTTCCGTTCTAGGGTTTTTCGTCTGGAATTTGGATGTACTCGTTCATGGCAATGTTTTCTTGCCATCCGAGTATGGTGGTTGTTTCTCCTCAGAGAAAGAATCGCCTCTAGGTTTGGTCACACAATCTGCTCATCCAGCCCGTTTCTCCCCTGATGACAAATACTCGAGGCAGAGAGTTCTTCTTAAGAAGCGATTTGGCTTGCTACCCACGCAGCATCCACCTCCAAAGTACTAA

Protein sequence

LRDSLSPAISVLGFFVWNLDVLVHGNVFLPSEYGGCFSSEKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPPPKY

Homology

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BLAST of Carg08959 vs. NCBI nr
Match: KAG7036310.1 (H/ACA ribonucleoprotein complex subunit 3-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 183.0 bits (463), Expect = 1.1e-42
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  LRDSLSPAISVLGFFVWNLDVLVHGNVFLPSEYGGCFSSEKESPLGLVTQSAHPARFSPD 60
          LRDSLSPAISVLGFFVWNLDVLVHGNVFLPSEYGGCFSSEKESPLGLVTQSAHPARFSPD
Sbjct: 1  LRDSLSPAISVLGFFVWNLDVLVHGNVFLPSEYGGCFSSEKESPLGLVTQSAHPARFSPD 60

Query: 61 DKYSRQRVLLKKRFGLLPTQHPPPKY 87
          DKYSRQRVLLKKRFGLLPTQHPPPKY
Sbjct: 61 DKYSRQRVLLKKRFGLLPTQHPPPKY 86

[Close]

BLAST of Carg08959 vs. NCBI nr
Match: KAG6606368.1 (H/ACA ribonucleoprotein complex subunit 3-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 102.1 bits (253), Expect = 2.5e-18
Identity = 46/50 (92.00%), Postives = 50/50 (100.00%), Query Frame = 0


Query: 37 FSSEKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPPPKY 87
          ++++KESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPPPKY
Sbjct: 40 YTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPPPKY 89

[Close]

BLAST of Carg08959 vs. NCBI nr
Match: XP_022931219.1 (H/ACA ribonucleoprotein complex subunit 3-like protein [Cucurbita moschata] >XP_022931220.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Cucurbita moschata] >XP_022996157.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Cucurbita maxima] >XP_022996158.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Cucurbita maxima] >XP_023534613.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Cucurbita pepo subsp. pepo] >XP_023534614.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 102.1 bits (253), Expect = 2.5e-18
Identity = 46/50 (92.00%), Postives = 50/50 (100.00%), Query Frame = 0


Query: 37 FSSEKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPPPKY 87
          ++++KESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPPPKY
Sbjct: 15 YTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPPPKY 64

[Close]

BLAST of Carg08959 vs. NCBI nr
Match: KAG4913253.1 (hypothetical protein JHK86_053686 [Glycine max] >KAG4928150.1 hypothetical protein JHK85_054636 [Glycine max] >KAG5086439.1 hypothetical protein JHK82_053836 [Glycine max] >KRG95691.1 hypothetical protein GLYMA_19G165900v4 [Glycine max] >RZB48261.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Glycine soja])

HSP 1 Score: 100.5 bits (249), Expect = 7.3e-18
Identity = 51/90 (56.67%), Postives = 67/90 (74.44%), Query Frame = 0


Query: 4   SLSPAI-SVLGFFVWNLDVLVHGNV------FLPSEYGGCFSSEKESPLGLVTQSAHPAR 63
           +L+P + S+ GF+++   +L  G+V      ++       ++++K+SPLGL TQSAHPAR
Sbjct: 31  TLNPFLASIAGFYLYCCSLLRLGSVTMYLQFYINDNGDKVYTTKKDSPLGLPTQSAHPAR 90

Query: 64  FSPDDKYSRQRVLLKKRFGLLPTQHPPPKY 87
           FSPDDKYSRQRVLLKKRFGLLPTQ PPPKY
Sbjct: 91  FSPDDKYSRQRVLLKKRFGLLPTQQPPPKY 120

[Close]

BLAST of Carg08959 vs. NCBI nr
Match: XP_030543963.1 (H/ACA ribonucleoprotein complex subunit 3-like protein [Rhodamnia argentea] >XP_030543964.1 H/ACA ribonucleoprotein complex subunit 3-like protein [Rhodamnia argentea])

HSP 1 Score: 99.8 bits (247), Expect = 1.3e-17
Identity = 45/50 (90.00%), Postives = 49/50 (98.00%), Query Frame = 0


Query: 37 FSSEKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPPPKY 87
          ++++KESPLGL TQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPPPKY
Sbjct: 15 YTTKKESPLGLPTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPPPKY 64

[Close]

BLAST of Carg08959 vs. ExPASy Swiss-Prot
Match: Q93XX8 (H/ACA ribonucleoprotein complex subunit 3-like protein OS=Arabidopsis thaliana OX=3702 GN=At2g20490 PE=3 SV=2)

HSP 1 Score: 87.0 bits (214), Expect = 1.1e-16
Identity = 39/50 (78.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 37 FSSEKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPPPKY 87
          ++++KESPLGL T+SAHPARFSPDDKYS+QRVLLKKRFGLLPTQ+ P +Y
Sbjct: 15 YTTKKESPLGLATESAHPARFSPDDKYSKQRVLLKKRFGLLPTQNAPLQY 64

[Close]

BLAST of Carg08959 vs. ExPASy Swiss-Prot
Match: Q6BQP3 (H/ACA ribonucleoprotein complex subunit NOP10 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=NOP10 PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.4e-11
Identity = 32/44 (72.73%), Postives = 37/44 (84.09%), Query Frame = 0


Query: 37 FSSEKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQ 81
          ++  K +  G +T+SAHPARFSPDDKYSRQRV LKKRFGLLPTQ
Sbjct: 15 YTLNKTTSDGEITKSAHPARFSPDDKYSRQRVTLKKRFGLLPTQ 58

[Close]

BLAST of Carg08959 vs. ExPASy Swiss-Prot
Match: Q54J26 (H/ACA ribonucleoprotein complex subunit 3 OS=Dictyostelium discoideum OX=44689 GN=nop10 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 6.9e-11
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 0


Query: 37 FSSEKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPPPKY 87
          ++ +KESP    T SAHPARFS DDKYSR+R+ LKKRFGLL TQ PP ++
Sbjct: 15 YTLKKESPNHEATYSAHPARFSVDDKYSRERIALKKRFGLLLTQQPPLEF 64

[Close]

BLAST of Carg08959 vs. ExPASy Swiss-Prot
Match: Q9P7M5 (H/ACA ribonucleoprotein complex subunit nop10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=nop10 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 9.0e-11
Identity = 35/64 (54.69%), Postives = 43/64 (67.19%), Query Frame = 0


Query: 23 VHGNVFLPSEYGGCFSSEKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHP 82
          +H   +L  E    ++ +K SP G VT+S+HPARFSPDDKYSRQR  LKKRF +L TQ P
Sbjct: 1  MHLMYYLNDEGKRVYTLKKVSPDGRVTKSSHPARFSPDDKYSRQRYTLKKRFHVLLTQLP 60

Query: 83 PPKY 87
             Y
Sbjct: 61 AKPY 64

[Close]

BLAST of Carg08959 vs. ExPASy Swiss-Prot
Match: Q6DRH5 (H/ACA ribonucleoprotein complex subunit 3 OS=Danio rerio OX=7955 GN=nop10 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.5e-10
Identity = 31/48 (64.58%), Postives = 36/48 (75.00%), Query Frame = 0


Query: 37 FSSEKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPPP 85
          ++ +K  P G  T SAHPARFSPDDK+SR RV +KKRFGLL TQ P P
Sbjct: 15 YTLKKVDPSGQPTSSAHPARFSPDDKFSRHRVTIKKRFGLLLTQQPRP 62

[Close]

BLAST of Carg08959 vs. ExPASy TrEMBL
Match: A0A6J1KA21 (Nucleolar protein 10 OS=Cucurbita maxima OX=3661 GN=LOC111491467 PE=3 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.2e-18
Identity = 46/50 (92.00%), Postives = 50/50 (100.00%), Query Frame = 0


Query: 37 FSSEKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPPPKY 87
          ++++KESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPPPKY
Sbjct: 15 YTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPPPKY 64

[Close]

BLAST of Carg08959 vs. ExPASy TrEMBL
Match: A0A6J1EYV1 (Nucleolar protein 10 OS=Cucurbita moschata OX=3662 GN=LOC111437463 PE=3 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.2e-18
Identity = 46/50 (92.00%), Postives = 50/50 (100.00%), Query Frame = 0


Query: 37 FSSEKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPPPKY 87
          ++++KESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPPPKY
Sbjct: 15 YTTKKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPPPKY 64

[Close]

BLAST of Carg08959 vs. ExPASy TrEMBL
Match: K7MYQ3 (Nucleolar protein 10 OS=Glycine max OX=3847 GN=GLYMA_19G165900 PE=3 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 3.6e-18
Identity = 51/90 (56.67%), Postives = 67/90 (74.44%), Query Frame = 0


Query: 4   SLSPAI-SVLGFFVWNLDVLVHGNV------FLPSEYGGCFSSEKESPLGLVTQSAHPAR 63
           +L+P + S+ GF+++   +L  G+V      ++       ++++K+SPLGL TQSAHPAR
Sbjct: 31  TLNPFLASIAGFYLYCCSLLRLGSVTMYLQFYINDNGDKVYTTKKDSPLGLPTQSAHPAR 90

Query: 64  FSPDDKYSRQRVLLKKRFGLLPTQHPPPKY 87
           FSPDDKYSRQRVLLKKRFGLLPTQ PPPKY
Sbjct: 91  FSPDDKYSRQRVLLKKRFGLLPTQQPPPKY 120

[Close]

BLAST of Carg08959 vs. ExPASy TrEMBL
Match: A0A445FHI3 (Nucleolar protein 10 OS=Glycine soja OX=3848 GN=D0Y65_051693 PE=3 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 3.6e-18
Identity = 51/90 (56.67%), Postives = 67/90 (74.44%), Query Frame = 0


Query: 4   SLSPAI-SVLGFFVWNLDVLVHGNV------FLPSEYGGCFSSEKESPLGLVTQSAHPAR 63
           +L+P + S+ GF+++   +L  G+V      ++       ++++K+SPLGL TQSAHPAR
Sbjct: 31  TLNPFLASIAGFYLYCCSLLRLGSVTMYLQFYINDNGDKVYTTKKDSPLGLPTQSAHPAR 90

Query: 64  FSPDDKYSRQRVLLKKRFGLLPTQHPPPKY 87
           FSPDDKYSRQRVLLKKRFGLLPTQ PPPKY
Sbjct: 91  FSPDDKYSRQRVLLKKRFGLLPTQQPPPKY 120

[Close]

BLAST of Carg08959 vs. ExPASy TrEMBL
Match: A0A4D6M8M9 (Nucleolar protein 10 OS=Vigna unguiculata OX=3917 GN=DEO72_LG6g2464 PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.4e-17
Identity = 48/82 (58.54%), Postives = 60/82 (73.17%), Query Frame = 0


Query: 5   LSPAISVLGFFVWNLDVLVHGNVFLPSEYGGCFSSEKESPLGLVTQSAHPARFSPDDKYS 64
           LS ++S+       L V+++   ++       ++++KESPLGL TQSAHPARFSPDDKYS
Sbjct: 35  LSLSLSLFISISEKLSVIMYLQFYINDNGDKVYTTKKESPLGLATQSAHPARFSPDDKYS 94

Query: 65  RQRVLLKKRFGLLPTQHPPPKY 87
           RQRV LKKRFGLLPTQ PPPKY
Sbjct: 95  RQRVTLKKRFGLLPTQQPPPKY 116

[Close]

BLAST of Carg08959 vs. TAIR 10
Match: AT2G20490.1 (nucleolar RNA-binding Nop10p family protein )

HSP 1 Score: 87.0 bits (214), Expect = 7.8e-18
Identity = 39/50 (78.00%), Postives = 47/50 (94.00%), Query Frame = 0


Query: 37 FSSEKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPPPKY 87
          ++++KESPLGL T+SAHPARFSPDDKYS+QRVLLKKRFGLLPTQ+ P +Y
Sbjct: 15 YTTKKESPLGLATESAHPARFSPDDKYSKQRVLLKKRFGLLPTQNAPLQY 64

[Close]

BLAST of Carg08959 vs. TAIR 10
Match: AT2G20490.2 (nucleolar RNA-binding Nop10p family protein )

HSP 1 Score: 85.9 bits (211), Expect = 1.7e-17
Identity = 41/56 (73.21%), Postives = 47/56 (83.93%), Query Frame = 0


Query: 31 SEYGGCFSSEKESPLGLVTQSAHPARFSPDDKYSRQRVLLKKRFGLLPTQHPPPKY 87
          +E G    + KESPLGL T+SAHPARFSPDDKYS+QRVLLKKRFGLLPTQ+ P +Y
Sbjct: 8  NEKGEKVYTTKESPLGLATESAHPARFSPDDKYSKQRVLLKKRFGLLPTQNAPLQY 63

The following BLAST results are available for this feature:

BLAST of Carg08959 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7036310.1	1.1e-42	100.00	H/ACA ribonucleoprotein complex subunit 3-like protein, partial [Cucurbita argyr...	[more]
KAG6606368.1	2.5e-18	92.00	H/ACA ribonucleoprotein complex subunit 3-like protein, partial [Cucurbita argyr...	[more]
XP_022931219.1	2.5e-18	92.00	H/ACA ribonucleoprotein complex subunit 3-like protein [Cucurbita moschata] >XP_...	[more]
KAG4913253.1	7.3e-18	56.67	hypothetical protein JHK86_053686 [Glycine max] >KAG4928150.1 hypothetical prote...	[more]
XP_030543963.1	1.3e-17	90.00	H/ACA ribonucleoprotein complex subunit 3-like protein [Rhodamnia argentea] >XP_...	[more]

BLAST of Carg08959 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93XX8	1.1e-16	78.00	H/ACA ribonucleoprotein complex subunit 3-like protein OS=Arabidopsis thaliana O...	[more]
Q6BQP3	2.4e-11	72.73	H/ACA ribonucleoprotein complex subunit NOP10 OS=Debaryomyces hansenii (strain A...	[more]
Q54J26	6.9e-11	64.00	H/ACA ribonucleoprotein complex subunit 3 OS=Dictyostelium discoideum OX=44689 G...	[more]
Q9P7M5	9.0e-11	54.69	H/ACA ribonucleoprotein complex subunit nop10 OS=Schizosaccharomyces pombe (stra...	[more]
Q6DRH5	1.5e-10	64.58	H/ACA ribonucleoprotein complex subunit 3 OS=Danio rerio OX=7955 GN=nop10 PE=3 S...	[more]

BLAST of Carg08959 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KA21	1.2e-18	92.00	Nucleolar protein 10 OS=Cucurbita maxima OX=3661 GN=LOC111491467 PE=3 SV=1	[more]
A0A6J1EYV1	1.2e-18	92.00	Nucleolar protein 10 OS=Cucurbita moschata OX=3662 GN=LOC111437463 PE=3 SV=1	[more]
K7MYQ3	3.6e-18	56.67	Nucleolar protein 10 OS=Glycine max OX=3847 GN=GLYMA_19G165900 PE=3 SV=1	[more]
A0A445FHI3	3.6e-18	56.67	Nucleolar protein 10 OS=Glycine soja OX=3848 GN=D0Y65_051693 PE=3 SV=1	[more]
A0A4D6M8M9	1.4e-17	58.54	Nucleolar protein 10 OS=Vigna unguiculata OX=3917 GN=DEO72_LG6g2464 PE=3 SV=1	[more]

BLAST of Carg08959 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G20490.1	7.8e-18	78.00	nucleolar RNA-binding Nop10p family protein	[more]
AT2G20490.2	1.7e-17	73.21	nucleolar RNA-binding Nop10p family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007264	H/ACA ribonucleoprotein complex, subunit Nop10	PFAM	PF04135	Nop10p	coord: 43..74 e-value: 2.2E-13 score: 50.0
IPR007264	H/ACA ribonucleoprotein complex, subunit Nop10	PANTHER	PTHR13305	RIBOSOME BIOGENESIS PROTEIN NOP10	coord: 36..86
None	No IPR available	GENE3D	2.20.28.40	H/ACA ribonucleoprotein complex, subunit Nop10	coord: 35..76 e-value: 3.2E-11 score: 45.0
None	No IPR available	PANTHER	PTHR13305:SF1	H/ACA RIBONUCLEOPROTEIN COMPLEX, SUBUNIT NOP10-RELATED	coord: 36..86
IPR036756	H/ACA ribonucleoprotein complex, subunit Nop10 superfamily	SUPERFAMILY	144210	Nop10-like SnoRNP	coord: 35..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg08959-RA	Carg08959-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0001522	pseudouridine synthesis
biological_process	GO:0006364	rRNA processing
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0030515	snoRNA binding