MELO.jh024751.1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO.jh024751.1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	mediator of RNA polymerase II transcription subunit 12-like isoform X1
Location	chr11: 22970866 .. 22971195 (-)
RNA-Seq Expression	MELO.jh024751.1
Synteny	MELO.jh024751.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ACGATTAGTCCTCTCATATGTTTCTACATTGGTGAGTGGCATCATCCTGATAGAGTACTTAGACAGTTCGGTATTCAACAAGCTGTTCCACGTGACTGTAATACTGAACCACTGTTGCACAACATTGACCTGAGGACTGCTGATTGGTCAGATAGAGTTGCTCATTTAGTGATGCGATGACATAATCGCAGAAGGTTTACTGCTACGGGACCTCCAATTGAGCAGTTTGATATGGATGTAACTCAAGAATACATCCATTGGTACAAAAACATTAGCAAGCTCTATATCACCCAACCGGGAGCTGCTATGAGTCATCTGGTATACATTTAA

mRNA sequence

ACGATTAGTCCTCTCATATGTTTCTACATTGGTGAGTGGCATCATCCTGATAGAGTACTTAGACAGTTCGGTATTCAACAAGCTGTTCCACGTGACTGTAATACTGAACCACTGTTGCACAACATTGACCTGAGGACTGCTGATTGGTCAGATAGAGTTGCTCATTTAGTGATGCGATGACATAATCGCAGAAGGTTTACTGCTACGGGACCTCCAATTGAGCAGTTTGATATGGATGTAACTCAAGAATACATCCATTGGTACAAAAACATTAGCAAGCTCTATATCACCCAACCGGGAGCTGCTATGAGTCATCTGGTATACATTTAA

Coding sequence (CDS)

ATGGATGTAACTCAAGAATACATCCATTGGTACAAAAACATTAGCAAGCTCTATATCACCCAACCGGGAGCTGCTATGAGTCATCTGGTATACATTTAA

Protein sequence

MDVTQEYIHWYKNISKLYITQPGAAMSHLVYI

Homology

[Close]

BLAST of MELO.jh024751.1 vs. NCBI nr
Match: XP_016900498.1 (PREDICTED: GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo])

HSP 1 Score: 65.5 bits (158), Expect = 2.38e-11
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0


Query: 1  MDVTQEYIHWYKNISKLYITQPGAAMSHL 29
          MDVTQEYIHWYKNISKLYITQPGAAMSHL
Sbjct: 1  MDVTQEYIHWYKNISKLYITQPGAAMSHL 29

[Close]

BLAST of MELO.jh024751.1 vs. NCBI nr
Match: XP_008449513.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo])

HSP 1 Score: 65.5 bits (158), Expect = 2.88e-11
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0


Query: 1  MDVTQEYIHWYKNISKLYITQPGAAMSHL 29
          MDVTQEYIHWYKNISKLYITQPGAAMSHL
Sbjct: 21 MDVTQEYIHWYKNISKLYITQPGAAMSHL 49

[Close]

BLAST of MELO.jh024751.1 vs. NCBI nr
Match: KAA0055863.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa] >TYK24087.1 serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 62.4 bits (150), Expect = 3.41e-11
Identity = 28/29 (96.55%), Postives = 28/29 (96.55%), Query Frame = 0


Query: 1  MDVTQEYIHWYKNISKLYITQPGAAMSHL 29
          MDVTQEYIHWYKNISKLYITQP AAMSHL
Sbjct: 64 MDVTQEYIHWYKNISKLYITQPRAAMSHL 92

[Close]

BLAST of MELO.jh024751.1 vs. NCBI nr
Match: TYJ95836.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 4.96e-11
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0


Query: 1    MDVTQEYIHWYKNISKLYITQPGAAMSHL 29
            MDVTQEYIHWYKNISKLYITQPGAAMSHL
Sbjct: 1034 MDVTQEYIHWYKNISKLYITQPGAAMSHL 1062

[Close]

BLAST of MELO.jh024751.1 vs. NCBI nr
Match: TYK27427.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 4.97e-11
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0


Query: 1   MDVTQEYIHWYKNISKLYITQPGAAMSHL 29
           MDVTQEYIHWYKNISKLYITQPGAAMSHL
Sbjct: 764 MDVTQEYIHWYKNISKLYITQPGAAMSHL 792

[Close]

BLAST of MELO.jh024751.1 vs. ExPASy TrEMBL
Match: A0A1S4DWZ9 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491376 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.15e-11
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0


Query: 1  MDVTQEYIHWYKNISKLYITQPGAAMSHL 29
          MDVTQEYIHWYKNISKLYITQPGAAMSHL
Sbjct: 1  MDVTQEYIHWYKNISKLYITQPGAAMSHL 29

[Close]

BLAST of MELO.jh024751.1 vs. ExPASy TrEMBL
Match: A0A1S3BLK4 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491376 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.40e-11
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0


Query: 1  MDVTQEYIHWYKNISKLYITQPGAAMSHL 29
          MDVTQEYIHWYKNISKLYITQPGAAMSHL
Sbjct: 21 MDVTQEYIHWYKNISKLYITQPGAAMSHL 49

[Close]

BLAST of MELO.jh024751.1 vs. ExPASy TrEMBL
Match: A0A5D3DKG5 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold943G00590 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.65e-11
Identity = 28/29 (96.55%), Postives = 28/29 (96.55%), Query Frame = 0


Query: 1  MDVTQEYIHWYKNISKLYITQPGAAMSHL 29
          MDVTQEYIHWYKNISKLYITQP AAMSHL
Sbjct: 64 MDVTQEYIHWYKNISKLYITQPRAAMSHL 92

[Close]

BLAST of MELO.jh024751.1 vs. ExPASy TrEMBL
Match: A0A5D3BAB0 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001240 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.40e-11
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0


Query: 1    MDVTQEYIHWYKNISKLYITQPGAAMSHL 29
            MDVTQEYIHWYKNISKLYITQPGAAMSHL
Sbjct: 1034 MDVTQEYIHWYKNISKLYITQPGAAMSHL 1062

[Close]

BLAST of MELO.jh024751.1 vs. ExPASy TrEMBL
Match: A0A5D3DUI1 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G001210 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.41e-11
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0


Query: 1   MDVTQEYIHWYKNISKLYITQPGAAMSHL 29
           MDVTQEYIHWYKNISKLYITQPGAAMSHL
Sbjct: 764 MDVTQEYIHWYKNISKLYITQPGAAMSHL 792

The following BLAST results are available for this feature:

BLAST of MELO.jh024751.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016900498.1	2.38e-11	100.00	PREDICTED: GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumi...	[more]
XP_008449513.1	2.88e-11	100.00	PREDICTED: mediator of RNA polymerase II transcription subunit 12-like isoform X...	[more]
KAA0055863.1	3.41e-11	96.55	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]
TYJ95836.1	4.96e-11	100.00	serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var....	[more]
TYK27427.1	4.97e-11	100.00	mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ...	[more]

BLAST of MELO.jh024751.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO.jh024751.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DWZ9	1.15e-11	100.00	GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo OX...	[more]
A0A1S3BLK4	1.40e-11	100.00	mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]
A0A5D3DKG5	1.65e-11	96.55	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]
A0A5D3BAB0	2.40e-11	100.00	Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va...	[more]
A0A5D3DUI1	2.41e-11	100.00	Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi...	[more]

BLAST of MELO.jh024751.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO.jh024751.1.t1	MELO.jh024751.1.t1	mRNA