MELO3C033366.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C033366.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Reverse transcriptase Ty1/copia-type domain-containing protein
Location	chr08: 21560359 .. 21561811 (+)
RNA-Seq Expression	MELO3C033366.jh1
Synteny	MELO3C033366.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAAATGTGGTGCAGCGAAGGATAGCTGAAGAGGTAAATTTTTTCAGATAAACATCATTCTTGCTTAGGTGTCATGAGTCTTATTGAGAAGGTCAGTCTATCCAAGAATATATCCAATGTTGGGCCATTTTACCCTCAGTTAATTGGGGAATTCATTGTAAATTTACCAACTGATTTTAATGATCTTAGTAGTCCTGATTATCAGACTGTTCATATTAGAGGATTAAAATTCTAGATCTCTCCTGTTGTCATTAATGGTTTTCTGCGTAATAATGTTGGGTCTAATTACTCTCCTTCTAATCCATCTAATGAAGTTTTAACGTCTGTATTAACTGGATGGACACTATCTTCCTGGCCTGTTAATGGAATCCATGCAGTTGCTCTCAGTGTTAAATATGTCATTCTTCATAAGGTTGGTATTGCCAATTGGTTCCCGTTTTCTTATGCTTTCAGTGTGTCTGTTGCGTTGGGAACATTTCTATATCAGATATGCCATGACGACTCTATAGATACAGGATCTTTTATATATAATCAGCTGCTGAGGCATGTAGGATCGTTTGGGGTTAAAATCCCTATTGCTTTACAACGATTTTTCTCTGGTCTACTACTTCATCTGAATAATGTTGTCTTAACAATGTCTGATCCCCGGGACCTGAACCAAATACCTTATCCTTGAATTACATACTTTTTTAGGGCAGTCATGTGCCAGATATAGAACATGACTTGCGTCCTTCACGAGCTCTCGAATGTTTGACATAAATGATTGGGATGAGAGTGCTGAAGGCTTCTTTGTTGATCGAGAATCGGCTTCCAGAATAGTCAAACACACTAGCAGCTGAGTCTCAAGCTCTCTCTACTTCCATTAATTTGTTATTTGAACGAAGGATAGAGGTTGATTCACTAATTCGTCACTTAAAATCATTGGCTCCTTCTACTAGTATAGGGGAGCATGGTTTTGAGTGATATTTCTTTTTGGTCCAAAGGGGGAGTAGTAGCAAGGTTGGACGATGGTTGATGGGCAAATGTAGCTGAAGCTGGAGTGCTGTTTTGTTGACATTATATTTTGTTTTGTTTCCCCTGGTTTAAGTTTCTATTTGAAGTTGTTTAAACTTTTGCAAGTTAGTACGATTTTTTAAAAACAAAAAACTTCTGTCTTGATGTTTAAAAAAAACTACTGGAATGAAATGATGTTCAAGTTAGTTTGTTGGTGGAAGTTTATGTGTTAGTTATTGGTGTTGTATGTGTGTGAATTTGTTGTATAAGATGCCCTGATGATGATTGTGTTGATATGTTGTGCTCCTTTATCTTTGCTAGTTATCTGATCCATGAGACAGTTCTGAGAAGCGGTGTCTTAAACTAGAAAAGAAATCTCCTTTTAGACAAAAGGGGGAGTTTGTTGGGATTTTGTCTAAAAGACATTGTGAGGATTGTGTTTTTAAGGATAAGATAA

mRNA sequence

ATGAAAAATGTGGTGCAGCGAAGGATAGCTGAAGAGGTAAATTTTTTCAGATAAACATCATTCTTGCTTAGGTGTCATGAGTCTTATTGAGAAGGTCAGTCTATCCAAGAATATATCCAATGTTGGGCCATTTTACCCTCAGTTAATTGGGGAATTCATTGTAAATTTACCAACTGATTTTAATGATCTTAGTAGTCCTGATTATCAGACTGTTCATATTAGAGGATTAAAATTCTAGATCTCTCCTGTTGTCATTAATGGTTTTCTGCGTAATAATGTTGGGTCTAATTACTCTCCTTCTAATCCATCTAATGAAGTTTTAACGTCTGTATTAACTGGATGGACACTATCTTCCTGGCCTGTTAATGGAATCCATGCAGTTGCTCTCAGTGTTAAATATGTCATTCTTCATAAGGTTGGTATTGCCAATTGGTTCCCGTTTTCTTATGCTTTCAGTGTGTCTGTTGCGTTGGGAACATTTCTATATCAGATATGCCATGACGACTCTATAGATACAGGATCTTTTATATATAATCAGCTGCTGAGGCATGTAGGATCGTTTGGGGTTAAAATCCCTATTGCTTTACAACGATTTTTCTCTGGTCTACTACTTCATCTGAATAATGTTGTCTTAACAATATGCCCTGATGATGATTGTGTTGATATGTTGTGCTCCTTTATCTTTGCTAGTTATCTGATCCATGAGACAGTTCTGAGAAGCGGTGTCTTAAACTAGAAAAGAAATCTCCTTTTAGACAAAAGGGGGAGTTTGTTGGGATTTTGTCTAAAAGACATTGTGAGGATTGTGTTTTTAAGGATAAGATAA

Coding sequence (CDS)

ATGAGTCTTATTGAGAAGGTCAGTCTATCCAAGAATATATCCAATGTTGGGCCATTTTACCCTCAGTTAATTGGGGAATTCATTGTAAATTTACCAACTGATTTTAATGATCTTAGTAGTCCTGATTATCAGACTGTTCATATTAGAGGATTAAAATTCTAG

Protein sequence

MSLIEKVSLSKNISNVGPFYPQLIGEFIVNLPTDFNDLSSPDYQTVHIRGLKF

Homology

[Close]

BLAST of MELO3C033366.jh1 vs. NCBI nr
Match: XP_008442287.1 (PREDICTED: uncharacterized protein LOC103486195 [Cucumis melo] >KAA0041309.1 uncharacterized protein E6C27_scaffold128G003060 [Cucumis melo var. makuwa] >TYK02768.1 uncharacterized protein E5676_scaffold145G00250 [Cucumis melo var. makuwa])

HSP 1 Score: 109 bits (273), Expect = 7.99e-27
Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 1   MSLIEKVSLSKNISNVGPFYPQLIGEFIVNLPTDFNDLSSPDYQTVHIRGLKF 53
           MSLIEKV LSKNISNVGPFYPQLIGEFIVNLPTDFNDLSSPDYQTVHIRGLKF
Sbjct: 191 MSLIEKVGLSKNISNVGPFYPQLIGEFIVNLPTDFNDLSSPDYQTVHIRGLKF 243

[Close]

BLAST of MELO3C033366.jh1 vs. NCBI nr
Match: XP_016903164.1 (PREDICTED: uncharacterized protein LOC107992057 [Cucumis melo])

HSP 1 Score: 96.7 bits (239), Expect = 5.33e-22
Identity = 45/53 (84.91%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 1  MSLIEKVSLSKNISNVGPFYPQLIGEFIVNLPTDFNDLSSPDYQTVHIRGLKF 53
          MSLIEKV LSK ISNVGPFYPQLI +FIVNLPTDFND SSPD+QT+HIRG KF
Sbjct: 1  MSLIEKVGLSKTISNVGPFYPQLIRKFIVNLPTDFNDPSSPDFQTIHIRGFKF 53

[Close]

BLAST of MELO3C033366.jh1 vs. NCBI nr
Match: XP_008457126.1 (PREDICTED: uncharacterized protein LOC103496872 [Cucumis melo])

HSP 1 Score: 91.3 bits (225), Expect = 1.73e-20
Identity = 42/53 (79.25%), Postives = 44/53 (83.02%), Query Frame = 0


Query: 1  MSLIEKVSLSKNISNVGPFYPQLIGEFIVNLPTDFNDLSSPDYQTVHIRGLKF 53
          M LIE+  L+K ISNVGPFYPQLI EFIVN P DFND SSPDYQTVHIRG KF
Sbjct: 1  MDLIERAGLTKTISNVGPFYPQLIREFIVNFPNDFNDPSSPDYQTVHIRGFKF 53

[Close]

BLAST of MELO3C033366.jh1 vs. NCBI nr
Match: XP_008456217.1 (PREDICTED: uncharacterized protein LOC103496220 [Cucumis melo])

HSP 1 Score: 90.5 bits (223), Expect = 3.19e-20
Identity = 41/52 (78.85%), Postives = 46/52 (88.46%), Query Frame = 0


Query: 1  MSLIEKVSLSKNISNVGPFYPQLIGEFIVNLPTDFNDLSSPDYQTVHIRGLK 52
          M+LIEK  LSK IS+VGPFYPQLI EF+VNLPTDFND SSP+YQT+HIRG K
Sbjct: 1  MNLIEKAGLSKTISDVGPFYPQLIREFVVNLPTDFNDPSSPNYQTIHIRGFK 52

[Close]

BLAST of MELO3C033366.jh1 vs. NCBI nr
Match: TYK02780.1 (uncharacterized protein E5676_scaffold145G00390 [Cucumis melo var. makuwa])

HSP 1 Score: 89.0 bits (219), Expect = 3.30e-20
Identity = 41/53 (77.36%), Postives = 45/53 (84.91%), Query Frame = 0


Query: 1  MSLIEKVSLSKNISNVGPFYPQLIGEFIVNLPTDFNDLSSPDYQTVHIRGLKF 53
          M+LI K  LSK IS+V PFYPQLI EF+VNLPTDFND SSPDYQT+HIRG KF
Sbjct: 1  MNLIAKSGLSKTISDVDPFYPQLIREFVVNLPTDFNDPSSPDYQTIHIRGFKF 53

[Close]

BLAST of MELO3C033366.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TIX5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold145G00250 PE=4 SV=1)

HSP 1 Score: 109 bits (273), Expect = 3.87e-27
Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 1   MSLIEKVSLSKNISNVGPFYPQLIGEFIVNLPTDFNDLSSPDYQTVHIRGLKF 53
           MSLIEKV LSKNISNVGPFYPQLIGEFIVNLPTDFNDLSSPDYQTVHIRGLKF
Sbjct: 191 MSLIEKVGLSKNISNVGPFYPQLIGEFIVNLPTDFNDLSSPDYQTVHIRGLKF 243

[Close]

BLAST of MELO3C033366.jh1 vs. ExPASy TrEMBL
Match: A0A1S3B4V9 (uncharacterized protein LOC103486195 OS=Cucumis melo OX=3656 GN=LOC103486195 PE=4 SV=1)

HSP 1 Score: 109 bits (273), Expect = 3.87e-27
Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 1   MSLIEKVSLSKNISNVGPFYPQLIGEFIVNLPTDFNDLSSPDYQTVHIRGLKF 53
           MSLIEKV LSKNISNVGPFYPQLIGEFIVNLPTDFNDLSSPDYQTVHIRGLKF
Sbjct: 191 MSLIEKVGLSKNISNVGPFYPQLIGEFIVNLPTDFNDLSSPDYQTVHIRGLKF 243

[Close]

BLAST of MELO3C033366.jh1 vs. ExPASy TrEMBL
Match: A0A1S4E4L2 (uncharacterized protein LOC107992057 OS=Cucumis melo OX=3656 GN=LOC107992057 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.58e-22
Identity = 45/53 (84.91%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 1  MSLIEKVSLSKNISNVGPFYPQLIGEFIVNLPTDFNDLSSPDYQTVHIRGLKF 53
          MSLIEKV LSK ISNVGPFYPQLI +FIVNLPTDFND SSPD+QT+HIRG KF
Sbjct: 1  MSLIEKVGLSKTISNVGPFYPQLIRKFIVNLPTDFNDPSSPDFQTIHIRGFKF 53

[Close]

BLAST of MELO3C033366.jh1 vs. ExPASy TrEMBL
Match: A0A1S3C633 (uncharacterized protein LOC103496872 OS=Cucumis melo OX=3656 GN=LOC103496872 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 8.36e-21
Identity = 42/53 (79.25%), Postives = 44/53 (83.02%), Query Frame = 0


Query: 1  MSLIEKVSLSKNISNVGPFYPQLIGEFIVNLPTDFNDLSSPDYQTVHIRGLKF 53
          M LIE+  L+K ISNVGPFYPQLI EFIVN P DFND SSPDYQTVHIRG KF
Sbjct: 1  MDLIERAGLTKTISNVGPFYPQLIREFIVNFPNDFNDPSSPDYQTVHIRGFKF 53

[Close]

BLAST of MELO3C033366.jh1 vs. ExPASy TrEMBL
Match: A0A1S3C400 (uncharacterized protein LOC103496220 OS=Cucumis melo OX=3656 GN=LOC103496220 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.54e-20
Identity = 41/52 (78.85%), Postives = 46/52 (88.46%), Query Frame = 0


Query: 1  MSLIEKVSLSKNISNVGPFYPQLIGEFIVNLPTDFNDLSSPDYQTVHIRGLK 52
          M+LIEK  LSK IS+VGPFYPQLI EF+VNLPTDFND SSP+YQT+HIRG K
Sbjct: 1  MNLIEKAGLSKTISDVGPFYPQLIREFVVNLPTDFNDPSSPNYQTIHIRGFK 52

The following BLAST results are available for this feature:

BLAST of MELO3C033366.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008442287.1	7.99e-27	98.11	PREDICTED: uncharacterized protein LOC103486195 [Cucumis melo] >KAA0041309.1 unc...	[more]
XP_016903164.1	5.33e-22	84.91	PREDICTED: uncharacterized protein LOC107992057 [Cucumis melo]	[more]
XP_008457126.1	1.73e-20	79.25	PREDICTED: uncharacterized protein LOC103496872 [Cucumis melo]	[more]
XP_008456217.1	3.19e-20	78.85	PREDICTED: uncharacterized protein LOC103496220 [Cucumis melo]	[more]
TYK02780.1	3.30e-20	77.36	uncharacterized protein E5676_scaffold145G00390 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C033366.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C033366.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TIX5	3.87e-27	98.11	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B4V9	3.87e-27	98.11	uncharacterized protein LOC103486195 OS=Cucumis melo OX=3656 GN=LOC103486195 PE=...	[more]
A0A1S4E4L2	2.58e-22	84.91	uncharacterized protein LOC107992057 OS=Cucumis melo OX=3656 GN=LOC107992057 PE=...	[more]
A0A1S3C633	8.36e-21	79.25	uncharacterized protein LOC103496872 OS=Cucumis melo OX=3656 GN=LOC103496872 PE=...	[more]
A0A1S3C400	1.54e-20	78.85	uncharacterized protein LOC103496220 OS=Cucumis melo OX=3656 GN=LOC103496220 PE=...	[more]

BLAST of MELO3C033366.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C033366.jh1.t1	MELO3C033366.jh1.t1	mRNA