MELO.jh101481.1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO.jh101481.1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionRab3 GTPase-activating protein catalytic subunit
Locationchr04: 20568010 .. 20570411 (+)
RNA-Seq ExpressionMELO.jh101481.1
SyntenyMELO.jh101481.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTTTCCGGTAACTATCTTCGACCATGGATGTGAATTCGCCGGTTTTCAGATCTTATCTAGTATAATATATGTATATATATAAACTCAAAATGTTCCCTAAATTGACGATTCCCAAATTGGAGATTTGAAGCAATTGTGTGTTGTGATTGAAATTTCAGGCGAGGAAGGTTCTGTGTGCTTTGAAAGGATTTGTGAAATTACAAGCAATGATGAGAGGTCATTTGGTGAGACAAAGAGCCACTGTCCATCACTTTCTTCTTCTCTCTTCATTTCTCTTCCGGTTTTGGAATCCATTTCTCTAATTTTGTTCCATTTCAGATCAAAATAAGCCCTAGCGATTTTTCTGTCTCTTGTTCGGTACGATGGGTCAGATTCAGCACTCTGAGAAGTACTTTGATGATATCTATGAGTACAGGTCTGTGATTTCTCTTCGATTCATCATGGTTTCGGTTCTTTTTCTTTTTAATTTTATTAATCTTGCAAATTTATGTTCTTAGATAGATTCATTTTGTGGATTTTAGATATGTTGATAAGATGTTTTTGAAAATTTCAGCTATGAATATGAACAAGTATTTGTCAATGTCACACGTTTATAATTACAAAAGTAGCATAAATAATAGGATATGATGTTACAATGTTAGTTTTTAGTGAAAGCTTTATTTTGAATATATAAGCAAATAGTAGGACTACATACACTCAGACAAGAATGTCTTGCTTATAAGCTCAAGACTAGTTGTAGTAGGGTATCAATATGATTTATCATGGTTAGGCAGCAAAAGTTTTTATATAATTGTTAGTTTAAACAGTTGAATAATTGTGCGTCTTCTTCATCTGGTTTTGATGCTTTTTGTGATCTTCCAGGTCAAAGATAAGTTTAGCTACTGTCGTTGGTTGTATGATGTCATTTATGTTGTGTGTATGCTTTCTTTGTCCTTCAATGGACTGCCTTTGGCATAAGTATCACTATTGCCCCAACTGCAAGGAAAAGGTATAACTATTTCCGATCGTTGTTCATTCTTTCAGTTGCTTCTTGTAATCAACATTTAGCTGTCTTGTAATTTATGTATAACTGTCTTGTAAATTATGTTGATGGATGGTTTGTAGTCTCTGCTTCCAGTGTTCATGTTTGCAAACCAAGCAGGCCTTGACATGTTTGAGACAACATTGATTTCCTTACAAGACATTACTTTGGATAAAATATTTGATGATTCAGCCTGGAAGGCTTTCTCTACTGTTTTTTTAGTCATTTAACCTCATCTTCAAATCAGTTTCACCAATTTATCTCATTCTATGTGTTTGCTTGTTTTTTCGAGTTTTAAGCAGCAGATGAAATTTTTATATCTAGCAAACATACTTATTGATTATATTAGAATTAGAATATACTAAATATTAACCTTGGTTAAATTCTTGTTAAGTACTAATAGGCTTTTTTTAGTAGTACTTAGAGTCTATCTATTCTAATATTTTGTCAAAATTTAATATGATATAGGTGAAACTTTGTTTAATTTTGTGCCACACATAACCCTTTGGATTTAATTAATGTGAAGGTGAAGATTATTGTTGTTTGTTGGATCTTTAATTAAGACTTGAATTATTCTTGTTCCTGCTCTTCTTCTTTTACTTCTTAGTCACTTGTTATTTTTAACACTGCAAACTAAATCACATTTGAATAAGTTGTTCTTAATAATTAACTTTATCTCAATAATTAGTAGTACTTTGCTTTCATTCTTACCTATACTGGTATTGAGAGTTAAAAGATGTTGCTTTGGTCAAATTTAGAAAGGAAAAGAAAATTTTTTTTGCCCAGTAAAAAGAAAAAAAGGATCTAAAGATTAGTCAAATCATAAAGAAATTGAGAGGGACCAAACAGTATATAACCTAATGTTTCCTATGTTCCTAAATTCTTAAATGATCCCTATTTCTCATGTATGTAGTTTTTGGCCAGCTTTTGTTCCAGTACATGATCCATCCAGAAAAGCATACATCGGTATCCAAAATATGGGAACAACTTTTAATAGGAGATTCGAAGCAGATCGCCTTGGTACCCAAGTGCCAATAAAACTTATGCATTTGGAAGGATTGTACGAGTTGTTTGTTTCAAAATTTATAAGTTCTTTGGGATGCTAGTATTTCTTGCTACTAATAATGAACACGTGTGATGCATGTGAAATAATATTTTTTCATCGCCAATCAAAATATATAATACTATAAAAATTATAGAAGAGCTACATATACACAACTTTGAAGATGGCAGCTGACTGTGCTCCGGTAGTGGCAACGGGTGCATCGGTGGTTATGACGGTGGCACCAATGTTGACCCCGGTTGTTGCTCCTGTCATGGCTGCAGCCACTGTTGCTACATCGATCACTGTTGTTATGGGGATTTTAGGAATTTGA

mRNA sequence

ATGGAGTTTCCGGCGAGGAAGGTTCTGTGTGCTTTGAAAGGATTTGTGAAATTACAAGCAATGATGAGAGGTCATTTGATCAAAATAAGCCCTAGCGATTTTTCTGTCTCTTGTTCGGTACGATGGGTCAGATTCAGCACTCTGAGAAGTACTTTGATGATATCTATGAGTACAGCTTTTGTTCCAGTACATGATCCATCCAGAAAAGCATACATCGGTATCCAAAATATGGGAACAACTTTTAATAGGAGATTCGAAGCAGATCGCCTTGCTGACTGTGCTCCGGTAGTGGCAACGGGTGCATCGGTGGTTATGACGGTGGCACCAATGTTGACCCCGGTTGTTGCTCCTGTCATGGCTGCAGCCACTGTTGCTACATCGATCACTGTTGTTATGGGGATTTTAGGAATTTGA

Coding sequence (CDS)

ATGGAGTTTCCGGCGAGGAAGGTTCTGTGTGCTTTGAAAGGATTTGTGAAATTACAAGCAATGATGAGAGGTCATTTGATCAAAATAAGCCCTAGCGATTTTTCTGTCTCTTGTTCGGTACGATGGGTCAGATTCAGCACTCTGAGAAGTACTTTGATGATATCTATGAGTACAGCTTTTGTTCCAGTACATGATCCATCCAGAAAAGCATACATCGGTATCCAAAATATGGGAACAACTTTTAATAGGAGATTCGAAGCAGATCGCCTTGCTGACTGTGCTCCGGTAGTGGCAACGGGTGCATCGGTGGTTATGACGGTGGCACCAATGTTGACCCCGGTTGTTGCTCCTGTCATGGCTGCAGCCACTGTTGCTACATCGATCACTGTTGTTATGGGGATTTTAGGAATTTGA

Protein sequence

MEFPARKVLCALKGFVKLQAMMRGHLIKISPSDFSVSCSVRWVRFSTLRSTLMISMSTAFVPVHDPSRKAYIGIQNMGTTFNRRFEADRLADCAPVVATGASVVMTVAPMLTPVVAPVMAAATVATSITVVMGILGI
Homology
[Close]
BLAST of MELO.jh101481.1 vs. NCBI nr
Match: KAA0068093.1 (LPS-induced tumor necrosis factor alpha factor [Cucumis melo var. makuwa] >TYK26075.1 LPS-induced tumor necrosis factor alpha factor [Cucumis melo var. makuwa])

HSP 1 Score: 137 bits (344), Expect = 2.63e-37
Identity = 77/79 (97.47%), Postives = 78/79 (98.73%), Query Frame = 0 

Query: 59  AFVPVHDPSRKAYIGIQNMGTTFNRRFEADRLADCAPVVATGASVVMTVAPMLTPVVAPV 118
           AFVPVHDPSRKAYIGIQNMGTTFNRRFEA+RLADCAPVVATGASVVMTVAPMLTPVVAPV
Sbjct: 150 AFVPVHDPSRKAYIGIQNMGTTFNRRFEAERLADCAPVVATGASVVMTVAPMLTPVVAPV 209

Query: 119 MAAATVATSITVVMGILGI 137
           MAAATVATSIT VMGILGI
Sbjct: 210 MAAATVATSITGVMGILGI 228

[Close]
BLAST of MELO.jh101481.1 vs. NCBI nr
Match: RVX23017.1 (Rab3 GTPase-activating protein catalytic subunit [Vitis vinifera])

HSP 1 Score: 69.3 bits (168), Expect = 3.24e-11
Identity = 36/57 (63.16%), Postives = 40/57 (70.18%), Query Frame = 0 

Query: 46  STLRSTLMISMST------AFVPVHDPSRKAYIGIQNMGTTFNRRFEADRLADCAPV 96
           S L S + I++S       AFVPVHDPSRKAYIGIQNMGT F RRFEADR+    PV
Sbjct: 127 SKLLSAIAIALSNCSSLWPAFVPVHDPSRKAYIGIQNMGTVFTRRFEADRIGSQVPV 183

[Close]
BLAST of MELO.jh101481.1 vs. NCBI nr
Match: XP_042509865.1 (rab3 GTPase-activating protein catalytic subunit-like isoform X3 [Macadamia integrifolia] >XP_042509866.1 rab3 GTPase-activating protein catalytic subunit-like isoform X3 [Macadamia integrifolia])

HSP 1 Score: 68.9 bits (167), Expect = 4.01e-11
Identity = 36/57 (63.16%), Postives = 40/57 (70.18%), Query Frame = 0 

Query: 46  STLRSTLMISMST------AFVPVHDPSRKAYIGIQNMGTTFNRRFEADRLADCAPV 96
           S L S + I++S       AFVPVHDPSRKAYIGIQNMGT F RRFEADR+    PV
Sbjct: 117 SKLLSAVSIALSNCGSTWPAFVPVHDPSRKAYIGIQNMGTVFTRRFEADRIGSQVPV 173

[Close]
BLAST of MELO.jh101481.1 vs. NCBI nr
Match: XP_042509864.1 (rab3 GTPase-activating protein catalytic subunit-like isoform X2 [Macadamia integrifolia])

HSP 1 Score: 68.9 bits (167), Expect = 4.59e-11
Identity = 36/57 (63.16%), Postives = 40/57 (70.18%), Query Frame = 0 

Query: 46  STLRSTLMISMST------AFVPVHDPSRKAYIGIQNMGTTFNRRFEADRLADCAPV 96
           S L S + I++S       AFVPVHDPSRKAYIGIQNMGT F RRFEADR+    PV
Sbjct: 134 SKLLSAVSIALSNCGSTWPAFVPVHDPSRKAYIGIQNMGTVFTRRFEADRIGSQVPV 190

[Close]
BLAST of MELO.jh101481.1 vs. NCBI nr
Match: XP_042509855.1 (rab3 GTPase-activating protein catalytic subunit-like isoform X1 [Macadamia integrifolia] >XP_042509856.1 rab3 GTPase-activating protein catalytic subunit-like isoform X1 [Macadamia integrifolia] >XP_042509857.1 rab3 GTPase-activating protein catalytic subunit-like isoform X1 [Macadamia integrifolia] >XP_042509858.1 rab3 GTPase-activating protein catalytic subunit-like isoform X1 [Macadamia integrifolia] >XP_042509859.1 rab3 GTPase-activating protein catalytic subunit-like isoform X1 [Macadamia integrifolia] >XP_042509860.1 rab3 GTPase-activating protein catalytic subunit-like isoform X1 [Macadamia integrifolia] >XP_042509861.1 rab3 GTPase-activating protein catalytic subunit-like isoform X1 [Macadamia integrifolia] >XP_042509862.1 rab3 GTPase-activating protein catalytic subunit-like isoform X1 [Macadamia integrifolia] >XP_042509863.1 rab3 GTPase-activating protein catalytic subunit-like isoform X1 [Macadamia integrifolia])

HSP 1 Score: 68.9 bits (167), Expect = 5.14e-11
Identity = 36/57 (63.16%), Postives = 40/57 (70.18%), Query Frame = 0 

Query: 46  STLRSTLMISMST------AFVPVHDPSRKAYIGIQNMGTTFNRRFEADRLADCAPV 96
           S L S + I++S       AFVPVHDPSRKAYIGIQNMGT F RRFEADR+    PV
Sbjct: 134 SKLLSAVSIALSNCGSTWPAFVPVHDPSRKAYIGIQNMGTVFTRRFEADRIGSQVPV 190

[Close]
BLAST of MELO.jh101481.1 vs. ExPASy TrEMBL
Match: A0A5D3DRF6 (LPS-induced tumor necrosis factor alpha factor OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1185G00340 PE=4 SV=1)

HSP 1 Score: 137 bits (344), Expect = 1.27e-37
Identity = 77/79 (97.47%), Postives = 78/79 (98.73%), Query Frame = 0 

Query: 59  AFVPVHDPSRKAYIGIQNMGTTFNRRFEADRLADCAPVVATGASVVMTVAPMLTPVVAPV 118
           AFVPVHDPSRKAYIGIQNMGTTFNRRFEA+RLADCAPVVATGASVVMTVAPMLTPVVAPV
Sbjct: 150 AFVPVHDPSRKAYIGIQNMGTTFNRRFEAERLADCAPVVATGASVVMTVAPMLTPVVAPV 209

Query: 119 MAAATVATSITVVMGILGI 137
           MAAATVATSIT VMGILGI
Sbjct: 210 MAAATVATSITGVMGILGI 228

[Close]
BLAST of MELO.jh101481.1 vs. ExPASy TrEMBL
Match: A0A438KP90 (Rab3 GTPase-activating protein catalytic subunit OS=Vitis vinifera OX=29760 GN=RAB3GAP1 PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.57e-11
Identity = 36/57 (63.16%), Postives = 40/57 (70.18%), Query Frame = 0 

Query: 46  STLRSTLMISMST------AFVPVHDPSRKAYIGIQNMGTTFNRRFEADRLADCAPV 96
           S L S + I++S       AFVPVHDPSRKAYIGIQNMGT F RRFEADR+    PV
Sbjct: 127 SKLLSAIAIALSNCSSLWPAFVPVHDPSRKAYIGIQNMGTVFTRRFEADRIGSQVPV 183

[Close]
BLAST of MELO.jh101481.1 vs. ExPASy TrEMBL
Match: Q9FGH0 (Rab3 GTPase-activating protein catalytic subunit OS=Arabidopsis thaliana OX=3702 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.54e-11
Identity = 34/54 (62.96%), Postives = 40/54 (74.07%), Query Frame = 0 

Query: 44  RFSTLRSTLMISM-STAFVPVHDPSRKAYIGIQNMGTTFNRRFEADRLADCAPV 96
           R+  L S + ++  S+ FVPVHDPSRKAYIGIQNMGT F RRFEADR+    PV
Sbjct: 183 RYDILASNITLAFASSTFVPVHDPSRKAYIGIQNMGTVFTRRFEADRVGSQVPV 236

[Close]
BLAST of MELO.jh101481.1 vs. ExPASy TrEMBL
Match: A0A453IAB2 (Rab3 GTPase-activating protein catalytic subunit OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.82e-11
Identity = 30/38 (78.95%), Postives = 32/38 (84.21%), Query Frame = 0 

Query: 59 AFVPVHDPSRKAYIGIQNMGTTFNRRFEADRLADCAPV 96
          AFVPVHDPSRKAYIGIQNMGT F RRFEADR+    P+
Sbjct: 5  AFVPVHDPSRKAYIGIQNMGTVFTRRFEADRIGSQVPI 42

[Close]
BLAST of MELO.jh101481.1 vs. ExPASy TrEMBL
Match: A0A0Q3HHC1 (Rab3 GTPase-activating protein catalytic subunit OS=Brachypodium distachyon OX=15368 GN=100825139 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 5.03e-11
Identity = 35/55 (63.64%), Postives = 41/55 (74.55%), Query Frame = 0 

Query: 48  LRSTLMISMST------AFVPVHDPSRKAYIGIQNMGTTFNRRFEADRLADCAPV 96
           L S++ I++S       AFVPVHDPSRKAYIGIQNMGT F RRFEADR+A   P+
Sbjct: 191 LLSSIAIALSNCGSNWPAFVPVHDPSRKAYIGIQNMGTVFTRRFEADRIASQVPI 245

[Close]
BLAST of MELO.jh101481.1 vs. TAIR 10
Match: AT5G58510.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G55060.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 68.9 bits (167), Expect = 3.5e-12
Identity = 36/57 (63.16%), Postives = 40/57 (70.18%), Query Frame = 0 

Query: 46  STLRSTLMISMST------AFVPVHDPSRKAYIGIQNMGTTFNRRFEADRLADCAPV 97
           S L S + I++S       AFVPVHDPSRKAYIGIQNMGT F RRFEADR+    PV
Sbjct: 138 SKLLSAVAIALSNCGSLWPAFVPVHDPSRKAYIGIQNMGTVFTRRFEADRVGSQVPV 194

The following BLAST results are available for this feature:
BLAST of MELO.jh101481.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0068093.12.63e-3797.47LPS-induced tumor necrosis factor alpha factor [Cucumis melo var. makuwa] >TYK26... [more]
RVX23017.13.24e-1163.16Rab3 GTPase-activating protein catalytic subunit [Vitis vinifera][more]
XP_042509865.14.01e-1163.16rab3 GTPase-activating protein catalytic subunit-like isoform X3 [Macadamia inte... [more]
XP_042509864.14.59e-1163.16rab3 GTPase-activating protein catalytic subunit-like isoform X2 [Macadamia inte... [more]
XP_042509855.15.14e-1163.16rab3 GTPase-activating protein catalytic subunit-like isoform X1 [Macadamia inte... [more]
BLAST of MELO.jh101481.1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO.jh101481.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DRF61.27e-3797.47LPS-induced tumor necrosis factor alpha factor OS=Cucumis melo var. makuwa OX=11... [more]
A0A438KP901.57e-1163.16Rab3 GTPase-activating protein catalytic subunit OS=Vitis vinifera OX=29760 GN=R... [more]
Q9FGH03.54e-1162.96Rab3 GTPase-activating protein catalytic subunit OS=Arabidopsis thaliana OX=3702... [more]
A0A453IAB23.82e-1178.95Rab3 GTPase-activating protein catalytic subunit OS=Aegilops tauschii subsp. str... [more]
A0A0Q3HHC15.03e-1163.64Rab3 GTPase-activating protein catalytic subunit OS=Brachypodium distachyon OX=1... [more]
BLAST of MELO.jh101481.1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G58510.13.5e-1263.16unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026147Rab3 GTPase-activating protein catalytic subunitPANTHERPTHR21422RAB3 GTPASE-ACTIVATING PROTEIN CATALYTIC SUBUNITcoord: 55..95
NoneNo IPR availablePANTHERPTHR21422:SF13BNAANNG16370D PROTEINcoord: 55..95

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO.jh101481.1.t1MELO.jh101481.1.t1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005096 GTPase activator activity