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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGTCTGCTGGAGTCGATCCTCATGATGATTGTAAGTTTGTTGGTGATAATCAAGGTAATATTGCATCCTTTGAGGAGAATGACGACAACAATGAACACAGAAAGGAAGAGGACTCTATTGAGTTTTCTAAAGATTGGGGAGTGATTGACAGTTGTGTGATGGTGAAGAAGAGAAAGTCCAAACCCCGGCTACGCATGCCTTAG mRNA sequence ATGTCTGCTGGAGTCGATCCTCATGATGATTGTAAGTTTGTTGGTGATAATCAAGGTAATATTGCATCCTTTGAGGAGAATGACGACAACAATGAACACAGAAAGGAAGAGGACTCTATTGAGTTTTCTAAAGATTGGGGAGTGATTGACAGTTGTGTGATGGTGAAGAAGAGAAAGTCCAAACCCCGGCTACGCATGCCTTAG Coding sequence (CDS) ATGTCTGCTGGAGTCGATCCTCATGATGATTGTAAGTTTGTTGGTGATAATCAAGGTAATATTGCATCCTTTGAGGAGAATGACGACAACAATGAACACAGAAAGGAAGAGGACTCTATTGAGTTTTCTAAAGATTGGGGAGTGATTGACAGTTGTGTGATGGTGAAGAAGAGAAAGTCCAAACCCCGGCTACGCATGCCTTAG Protein sequence MSAGVDPHDDCKFVGDNQGNIASFEENDDNNEHRKEEDSIEFSKDWGVIDSCVMVKKRKSKPRLRMP*
Homology
BLAST of CSPI05G12280.1 vs. ExPASy TrEMBL
Match: A0A0A0KMD4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G283480 PE=4 SV=1) HSP 1 Score: 139.0 bits (349), Expect = 7.1e-30 Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = 0
Query: 1 MSAGVDPHDDCKFVGDNQGNIASFEENDDNNEHRKEEDSIEFSKDWGVIDSCVMVKKRKS 60
MSAGVDPHDDCKFVGDNQGNIASFEEND+NNEHRKEEDSIEFSKDWGVIDSCVMVKKRKS
Sbjct: 1 MSAGVDPHDDCKFVGDNQGNIASFEENDNNNEHRKEEDSIEFSKDWGVIDSCVMVKKRKS 60
Query: 61 KPRLRMP 68
KPRLRMP
Sbjct: 61 KPRLRMP 67
BLAST of CSPI05G12280.1 vs. NCBI nr
Match: KGN50830.1 (hypothetical protein Csa_004697 [Cucumis sativus]) HSP 1 Score: 139.0 bits (349), Expect = 1.5e-29 Identity = 66/67 (98.51%), Postives = 67/67 (100.00%), Query Frame = 0
Query: 1 MSAGVDPHDDCKFVGDNQGNIASFEENDDNNEHRKEEDSIEFSKDWGVIDSCVMVKKRKS 60
MSAGVDPHDDCKFVGDNQGNIASFEEND+NNEHRKEEDSIEFSKDWGVIDSCVMVKKRKS
Sbjct: 1 MSAGVDPHDDCKFVGDNQGNIASFEENDNNNEHRKEEDSIEFSKDWGVIDSCVMVKKRKS 60
Query: 61 KPRLRMP 68
KPRLRMP
Sbjct: 61 KPRLRMP 67
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0KMD4 | 7.1e-30 | 98.51 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G283480 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KGN50830.1 | 1.5e-29 | 98.51 | hypothetical protein Csa_004697 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..40 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 26..40 |
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CSPI05G12280.1.cds1 | CSPI05G12280.1.cds1 | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CSPI05G12280.1 | CSPI05G12280.1-protein | polypeptide |
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