CSPI05G01260 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI05G01260
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	rRNA intron-encoded homing endonuclease
Location	Chr5: 1711357 .. 1711665 (+)
RNA-Seq Expression	CSPI05G01260
Synteny	CSPI05G01260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTATGAAAAACGAACAACTGTGAAAGCATTTGCCAATGATGTTTTCATTGATCAAGAATTGAAGTTTAAGGCTCAAAGGCAACCAACTATTATCCTAGTCTCAACCATAAACGATGTTAACCAGGGATTGGCAGATATCGCTTTAAGGACTTCACCAGAACATTATGATAAATCAAAAGTCTTTGCCAAGGGGAGTATAGTTACAAAGCTGAAACTTAAAGGAATTGACAGAAGGGAGCCACGTGGAGTGGAGCTTGCGGGGGTTAGTTTGACTCAACATAGGAAAACTTACCAAGTCCAGACATAG

mRNA sequence

ATTTATGAAAAACGAACAACTGTGAAAGCATTTGCCAATGATGTTTTCATTGATCAAGAATTGAAGTTTAAGGCTCAAAGGCAACCAACTATTATCCTAGTCTCAACCATAAACGATGTTAACCAGGGATTGGCAGATATCGCTTTAAGGACTTCACCAGAACATTATGATAAATCAAAAGTCTTTGCCAAGGGGAGTATAGTTACAAAGCTGAAACTTAAAGGAATTGACAGAAGGGAGCCACGTGGAGTGGAGCTTGCGGGGGTTAGTTTGACTCAACATAGGAAAACTTACCAAGTCCAGACATAG

Coding sequence (CDS)

ATTTATGAAAAACGAACAACTGTGAAAGCATTTGCCAATGATGTTTTCATTGATCAAGAATTGAAGTTTAAGGCTCAAAGGCAACCAACTATTATCCTAGTCTCAACCATAAACGATGTTAACCAGGGATTGGCAGATATCGCTTTAAGGACTTCACCAGAACATTATGATAAATCAAAAGTCTTTGCCAAGGGGAGTATAGTTACAAAGCTGAAACTTAAAGGAATTGACAGAAGGGAGCCACGTGGAGTGGAGCTTGCGGGGGTTAGTTTGACTCAACATAGGAAAACTTACCAAGTCCAGACATAG

Protein sequence

IYEKRTTVKAFANDVFIDQELKFKAQRQPTIILVSTINDVNQGLADIALRTSPEHYDKSKVFAKGSIVTKLKLKGIDRREPRGVELAGVSLTQHRKTYQVQT*

Homology

[Close]

BLAST of CSPI05G01260 vs. ExPASy TrEMBL
Match: A0A6A1VJU8 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR5G025804 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 5.0e-19
Identity = 55/88 (62.50%), Postives = 65/88 (73.86%), Query Frame = 0


Query: 1   IYEKRTTVKAFANDVFIDQELKFKAQRQPTIILVSTINDVNQGLADIALRTSPEHYDKSK 60
           IYE+RTT KAFA DVFI+QE K  A+R+   +LVSTIND +QG AD+ALRT P  Y+KSK
Sbjct: 21  IYERRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVALRTPPAPYEKSK 80

Query: 61  VFAK-GSIVTKLKLKGIDRREPRGVELA 88
                GS+V +LKLKGID R P GVE A
Sbjct: 81  SLGSGGSMVARLKLKGIDGRAPPGVEPA 108

[Close]

BLAST of CSPI05G01260 vs. ExPASy TrEMBL
Match: A0A2P5YNP4 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA03427 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 5.0e-19
Identity = 54/86 (62.79%), Postives = 64/86 (74.42%), Query Frame = 0


Query: 1   IYEKRTTVKAFANDVFIDQELKFKAQRQPTIILVSTINDVNQGLADIALRTSPEHYDKSK 60
           IYE+RTT KAFA DVFI+QE K  A+R+   +LVSTIND +QG AD+A RT P  Y+KSK
Sbjct: 59  IYERRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVAFRTPPAPYEKSK 118

Query: 61  VFAK-GSIVTKLKLKGIDRREPRGVE 86
                GS+VT+LKLKGID R P GVE
Sbjct: 119 SLGSGGSMVTRLKLKGIDGRAPPGVE 144

[Close]

BLAST of CSPI05G01260 vs. ExPASy TrEMBL
Match: A0A6P5YFG8 (uncharacterized protein LOC111291567 OS=Durio zibethinus OX=66656 GN=LOC111291567 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 4.3e-18
Identity = 53/88 (60.23%), Postives = 63/88 (71.59%), Query Frame = 0


Query: 1   IYEKRTTVKAFANDVFIDQELKFKAQRQPTIILVSTINDVNQGLADIALRTSPEHYDKSK 60
           IYE+RTT KAFA DVFI+QE K  A+R+   +LVSTIND +QG AD+  RT P  Y+KSK
Sbjct: 52  IYERRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVTFRTPPAPYEKSK 111

Query: 61  VFAK-GSIVTKLKLKGIDRREPRGVELA 88
                GS+V +LKLKGID R P GVE A
Sbjct: 112 SLGSGGSMVARLKLKGIDGRAPPGVEPA 139

[Close]

BLAST of CSPI05G01260 vs. ExPASy TrEMBL
Match: A0A6P5Y5P5 (uncharacterized protein LOC111289175 OS=Durio zibethinus OX=66656 GN=LOC111289175 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 4.3e-18
Identity = 53/88 (60.23%), Postives = 63/88 (71.59%), Query Frame = 0


Query: 1   IYEKRTTVKAFANDVFIDQELKFKAQRQPTIILVSTINDVNQGLADIALRTSPEHYDKSK 60
           IYE+RTT KAFA DVFI+QE K  A+R+   +LVSTIND +QG AD+  RT P  Y+KSK
Sbjct: 88  IYERRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVTFRTPPAPYEKSK 147

Query: 61  VFAK-GSIVTKLKLKGIDRREPRGVELA 88
                GS+V +LKLKGID R P GVE A
Sbjct: 148 SLGSGGSMVARLKLKGIDGRAPPGVEPA 175

[Close]

BLAST of CSPI05G01260 vs. ExPASy TrEMBL
Match: A0A0A0LDF7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G512980 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 9.5e-18
Identity = 53/84 (63.10%), Postives = 62/84 (73.81%), Query Frame = 0


Query: 5   RTTVKAFANDVFIDQELKFKAQRQPTIILVSTINDVNQGLADIALRTSPEHYDKSKVFAK 64
           RTT KAFA DVFI+QE K  A+R+   +LVSTIND +QGLAD+ALRT P  Y+KSK    
Sbjct: 28  RTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGS 87

Query: 65  -GSIVTKLKLKGIDRREPRGVELA 88
            GS+V +LKLKGID R P GVE A
Sbjct: 88  GGSMVARLKLKGIDGRAPPGVEPA 111

[Close]

BLAST of CSPI05G01260 vs. NCBI nr
Match: KAF3648179.1 (putative domain-containing protein-like [Capsicum annuum])

HSP 1 Score: 105.1 bits (261), Expect = 3.6e-19
Identity = 56/88 (63.64%), Postives = 65/88 (73.86%), Query Frame = 0


Query: 1   IYEKRTTVKAFANDVFIDQELKFKAQRQPTIILVSTINDVNQGLADIALRTSPEHYDKSK 60
           IYE RTT KAF+ DVFI+QE KF A+RQ   +LVSTIND +QG AD+A RT P  Y+KSK
Sbjct: 209 IYEIRTTAKAFSKDVFINQERKFGARRQSATVLVSTINDADQGSADVAFRTLPAPYEKSK 268

Query: 61  VFA-KGSIVTKLKLKGIDRREPRGVELA 88
               +GS+V KLKLKGID R P GVE A
Sbjct: 269 FLGFRGSMVAKLKLKGIDGRAPPGVEPA 296

[Close]

BLAST of CSPI05G01260 vs. NCBI nr
Match: KAB1212993.1 (hypothetical protein CJ030_MR5G025804 [Morella rubra])

HSP 1 Score: 103.6 bits (257), Expect = 1.0e-18
Identity = 55/88 (62.50%), Postives = 65/88 (73.86%), Query Frame = 0


Query: 1   IYEKRTTVKAFANDVFIDQELKFKAQRQPTIILVSTINDVNQGLADIALRTSPEHYDKSK 60
           IYE+RTT KAFA DVFI+QE K  A+R+   +LVSTIND +QG AD+ALRT P  Y+KSK
Sbjct: 21  IYERRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVALRTPPAPYEKSK 80

Query: 61  VFAK-GSIVTKLKLKGIDRREPRGVELA 88
                GS+V +LKLKGID R P GVE A
Sbjct: 81  SLGSGGSMVARLKLKGIDGRAPPGVEPA 108

[Close]

BLAST of CSPI05G01260 vs. NCBI nr
Match: PPS17158.1 (hypothetical protein GOBAR_AA03427 [Gossypium barbadense])

HSP 1 Score: 103.6 bits (257), Expect = 1.0e-18
Identity = 54/86 (62.79%), Postives = 64/86 (74.42%), Query Frame = 0


Query: 1   IYEKRTTVKAFANDVFIDQELKFKAQRQPTIILVSTINDVNQGLADIALRTSPEHYDKSK 60
           IYE+RTT KAFA DVFI+QE K  A+R+   +LVSTIND +QG AD+A RT P  Y+KSK
Sbjct: 59  IYERRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVAFRTPPAPYEKSK 118

Query: 61  VFAK-GSIVTKLKLKGIDRREPRGVE 86
                GS+VT+LKLKGID R P GVE
Sbjct: 119 SLGSGGSMVTRLKLKGIDGRAPPGVE 144

[Close]

BLAST of CSPI05G01260 vs. NCBI nr
Match: KAF3660097.1 (putative domain-containing protein-like [Capsicum annuum])

HSP 1 Score: 102.8 bits (255), Expect = 1.8e-18
Identity = 55/88 (62.50%), Postives = 64/88 (72.73%), Query Frame = 0


Query: 1   IYEKRTTVKAFANDVFIDQELKFKAQRQPTIILVSTINDVNQGLADIALRTSPEHYDKSK 60
           IYE RTT KAF+ DVFI+QE K  A+RQ   +LVSTIND +QG AD+A RT P  Y+KSK
Sbjct: 209 IYEIRTTAKAFSKDVFINQERKLGARRQSATVLVSTINDADQGSADVAFRTLPAPYEKSK 268

Query: 61  VFA-KGSIVTKLKLKGIDRREPRGVELA 88
               +GS+V KLKLKGID R P GVE A
Sbjct: 269 FLGFRGSMVAKLKLKGIDGRAPPGVEPA 296

[Close]

BLAST of CSPI05G01260 vs. NCBI nr
Match: XP_022735763.1 (uncharacterized protein LOC111289175 [Durio zibethinus])

HSP 1 Score: 100.5 bits (249), Expect = 8.8e-18
Identity = 53/88 (60.23%), Postives = 63/88 (71.59%), Query Frame = 0


Query: 1   IYEKRTTVKAFANDVFIDQELKFKAQRQPTIILVSTINDVNQGLADIALRTSPEHYDKSK 60
           IYE+RTT KAFA DVFI+QE K  A+R+   +LVSTIND +QG AD+  RT P  Y+KSK
Sbjct: 88  IYERRTTAKAFAKDVFINQERKLGARRRSDTVLVSTINDADQGSADVTFRTPPAPYEKSK 147

Query: 61  VFAK-GSIVTKLKLKGIDRREPRGVELA 88
                GS+V +LKLKGID R P GVE A
Sbjct: 148 SLGSGGSMVARLKLKGIDGRAPPGVEPA 175

The following BLAST results are available for this feature:

BLAST of CSPI05G01260 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI05G01260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6A1VJU8	5.0e-19	62.50	Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR5G025804 PE=4 SV=1	[more]
A0A2P5YNP4	5.0e-19	62.79	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA03427 PE=4 SV...	[more]
A0A6P5YFG8	4.3e-18	60.23	uncharacterized protein LOC111291567 OS=Durio zibethinus OX=66656 GN=LOC11129156...	[more]
A0A6P5Y5P5	4.3e-18	60.23	uncharacterized protein LOC111289175 OS=Durio zibethinus OX=66656 GN=LOC11128917...	[more]
A0A0A0LDF7	9.5e-18	63.10	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G512980 PE=4 SV=1	[more]

BLAST of CSPI05G01260 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF3648179.1	3.6e-19	63.64	putative domain-containing protein-like [Capsicum annuum]	[more]
KAB1212993.1	1.0e-18	62.50	hypothetical protein CJ030_MR5G025804 [Morella rubra]	[more]
PPS17158.1	1.0e-18	62.79	hypothetical protein GOBAR_AA03427 [Gossypium barbadense]	[more]
KAF3660097.1	1.8e-18	62.50	putative domain-containing protein-like [Capsicum annuum]	[more]
XP_022735763.1	8.8e-18	60.23	uncharacterized protein LOC111289175 [Durio zibethinus]	[more]

BLAST of CSPI05G01260 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34410	INTRON-ENCODED HOMING ENDONUCLEASE, PUTATIVE-RELATED	coord: 3..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G01260.1	CSPI05G01260.1	mRNA