CSPI03G04080 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G04080
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Nuclear transcription factor Y subunit B-3-like
Location	Chr3: 3364575 .. 3365660 (+)
RNA-Seq Expression	CSPI03G04080
Synteny	CSPI03G04080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGTTTTGGAATCAAAGATTAGGTTTTGCATTGAGATATTGCATTTTAATTTGGTTAAATTAAATTTTGTTGTTCAATGATAGCAACTTGGCAACTCTCCCATTCCCATCCCCTTTACAAACATCTCTCTATCTCTCTCTCTCTCTCACACACACACACACACACACATTTCACTTCCACATCCCCTAATTTCACAAACCCTAATTCCTCTTCCCCTCTTCCATGGCGGACTCCGACAACGACTCCGGCGGTGGTTACCAGAAATCCCCATCTCCACGTGAACACGACAGACTCCTCCCGATCGCCAACGTCGGCCGGATCATGAAGAAAGCTCTCCCTGGCAACGCCAAGATCTCAAAAGACGCCAAAGAAACCGTTCAAGAATGCGTCTCCGAGTTCATCAGCTTCGTCACCGGTGAAGCATCCGACAAGTGCCACAACGAGAAACGAAAAACAATCAACGGCGACGATTTGCTCTGGGCCATGGCTACCTTAGGGTTCGAAGACTATGTGGATCCTCTCAAGCTTTATCTCCAACGGTTTCGAGAAATTGAAGGCGAGAGGACCACGCTTGCCTCACGTGACTCCGCCTCCTCCGCCGCGAACTCCGCCGCAGCTGGGAATAGTGGGTTTTTCGACGGCGGTGGGGAATTTGGGGGCGCGGGTGGGAGTGGGATGGGGATGGGAATGACGACGACGATGCCTCCAAATGTTTATGGTTCTAATGGGCCGCGTTGGGATGGGCCTGGGTTTAGTACTACCGGTCGGCCCAGGTAGATGGGCCATATCCGCCCATTGGGTTTTTATTGGGCCGAGTACTATAACACTTCTACTACAACATTCATTATGACGGCGACGGGGTATGCGAAATCTCCGTTTTATCCTCCGTAAAATGAAGATCGGTAGCTGAGGAAAGGTCAAGTCTTTTTTTCTTTTTCCTTTTTGTTTAATTTTATAAAAAAATATATAGTGACGTAGATAAATATTATTATTATTATTATTAATAATAGAGCATGAATTTAATAATGTATTTCCATTTTAATAAATATGCATTTGATAATTTTTATAACAAATATAATTATGTT

mRNA sequence

AAAGTTTTGGAATCAAAGATTAGGTTTTGCATTGAGATATTGCATTTTAATTTGGTTAAATTAAATTTTGTTGTTCAATGATAGCAACTTGGCAACTCTCCCATTCCCATCCCCTTTACAAACATCTCTCTATCTCTCTCTCTCTCTCACACACACACACACACACACATTTCACTTCCACATCCCCTAATTTCACAAACCCTAATTCCTCTTCCCCTCTTCCATGGCGGACTCCGACAACGACTCCGGCGGTGGTTACCAGAAATCCCCATCTCCACGTGAACACGACAGACTCCTCCCGATCGCCAACGTCGGCCGGATCATGAAGAAAGCTCTCCCTGGCAACGCCAAGATCTCAAAAGACGCCAAAGAAACCGTTCAAGAATGCGTCTCCGAGTTCATCAGCTTCGTCACCGGTGAAGCATCCGACAAGTGCCACAACGAGAAACGAAAAACAATCAACGGCGACGATTTGCTCTGGGCCATGGCTACCTTAGGGTTCGAAGACTATGTGGATCCTCTCAAGCTTTATCTCCAACGGTTTCGAGAAATTGAAGGCGAGAGGACCACGCTTGCCTCACGTGACTCCGCCTCCTCCGCCGCGAACTCCGCCGCAGCTGGGAATAGTGGGTTTTTCGACGGCGGTGGGGAATTTGGGGGCGCGGGTGGGAGTGGGATGGGGATGGGAATGACGACGACGATGCCTCCAAATGTTTATGGTTCTAATGGGCCGCGTTGGGATGGGCCTGGGTTTAGTACTACCGGTCGGCCCAGGTAGATGGGCCATATCCGCCCATTGGGTTTTTATTGGGCCGAGTACTATAACACTTCTACTACAACATTCATTATGACGGCGACGGGGTATGCGAAATCTCCGTTTTATCCTCCGTAAAATGAAGATCGGTAGCTGAGGAAAGGTCAAGTCTTTTTTTCTTTTTCCTTTTTGTTTAATTTTATAAAAAAATATATAGTGACGTAGATAAATATTATTATTATTATTATTAATAATAGAGCATGAATTTAATAATGTATTTCCATTTTAATAAATATGCATTTGATAATTTTTATAACAAATATAATTATGTT

Coding sequence (CDS)

ATGGCGGACTCCGACAACGACTCCGGCGGTGGTTACCAGAAATCCCCATCTCCACGTGAACACGACAGACTCCTCCCGATCGCCAACGTCGGCCGGATCATGAAGAAAGCTCTCCCTGGCAACGCCAAGATCTCAAAAGACGCCAAAGAAACCGTTCAAGAATGCGTCTCCGAGTTCATCAGCTTCGTCACCGGTGAAGCATCCGACAAGTGCCACAACGAGAAACGAAAAACAATCAACGGCGACGATTTGCTCTGGGCCATGGCTACCTTAGGGTTCGAAGACTATGTGGATCCTCTCAAGCTTTATCTCCAACGGTTTCGAGAAATTGAAGGCGAGAGGACCACGCTTGCCTCACGTGACTCCGCCTCCTCCGCCGCGAACTCCGCCGCAGCTGGGAATAGTGGGTTTTTCGACGGCGGTGGGGAATTTGGGGGCGCGGGTGGGAGTGGGATGGGGATGGGAATGACGACGACGATGCCTCCAAATGTTTATGGTTCTAATGGGCCGCGTTGGGATGGGCCTGGGTTTAGTACTACCGGTCGGCCCAGGTAG

Protein sequence

MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASRDSASSAANSAAAGNSGFFDGGGEFGGAGGSGMGMGMTTTMPPNVYGSNGPRWDGPGFSTTGRPR*

Homology

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BLAST of CSPI03G04080 vs. ExPASy Swiss-Prot
Match: Q9FGJ3 (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NFYB2 PE=1 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 5.1e-51
Identity = 118/192 (61.46%), Postives = 127/192 (66.15%), Query Frame = 0


Query: 1   MADSDNDSGGGY-------QKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQ 60
           M DSD DSGGG        Q S SPRE DR LPIANV RIMKKALP NAKISKDAKET+Q
Sbjct: 1   MGDSDRDSGGGQNGNNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQ 60

Query: 61  ECVSEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGE 120
           ECVSEFISFVTGEASDKC  EKRKTINGDDLLWAM TLGFEDYV+PLK+YLQRFREIEGE
Sbjct: 61  ECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGE 120

Query: 121 RTTLASRDSASSAANSAAAGNSGFFDGGGEFGGAGGSGMGMGMTTTMPPN-VYGSNGPRW 180
           RT L    +                DGGG +GG GG             N +YG+ G   
Sbjct: 121 RTGLGRPQTGGEVGEHQ---RDAVGDGGGFYGGGGGMQYHQHHQFLHQQNHMYGATGGGS 180

Query: 181 DGPGFSTTGRPR 185
           D  G + +GR R
Sbjct: 181 DSGGGAASGRTR 189

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BLAST of CSPI03G04080 vs. ExPASy Swiss-Prot
Match: O23310 (Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana OX=3702 GN=NFYB3 PE=1 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 9.5e-50
Identity = 112/162 (69.14%), Postives = 122/162 (75.31%), Query Frame = 0


Query: 1   MADSDNDSGGGYQ-KSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEF 60
           MADSDNDSGG     + S RE DR LPIANV RIMKKALP NAKISKDAKETVQECVSEF
Sbjct: 1   MADSDNDSGGHKDGGNASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEF 60

Query: 61  ISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLAS 120
           ISF+TGEASDKC  EKRKTINGDDLLWAM TLGFEDYV+PLK+YLQ++RE+EGE+TT A 
Sbjct: 61  ISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTTAG 120

Query: 121 RDSASSAANSAAAGNSGFFDGGGEFGGAGGSGM-GMGMTTTM 161
           R            G  G   GGG   G+GG+ M G GM TTM
Sbjct: 121 RQGDKE-------GGGG---GGGAGSGSGGAPMYGGGMVTTM 152

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BLAST of CSPI03G04080 vs. ExPASy Swiss-Prot
Match: Q75IZ7 (Nuclear transcription factor Y subunit B-8 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYB8 PE=1 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 3.1e-48
Identity = 112/176 (63.64%), Postives = 125/176 (71.02%), Query Frame = 0


Query: 1   MADSDNDSGGGYQ----KSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECV 60
           M DSDNDSGG       +  SPRE DR LPIANV RIMKKALP NAKISKDAKETVQECV
Sbjct: 1   MPDSDNDSGGPSNYAGGELSSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECV 60

Query: 61  SEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTT 120
           SEFISF+TGEASDKC  EKRKTINGDDLLWAM TLGFEDYVDPLK YL +FREIEGER  
Sbjct: 61  SEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVDPLKHYLHKFREIEGERAA 120

Query: 121 LASRDSASSAANSAAAGNSGFFDGGGEFGG--AGGSGMGMGMTTTMPPNVYGSNGP 171
            ++  + +SAA++         +  G + G  A G+G G GM   M   +YGS  P
Sbjct: 121 ASTTGAGTSAASTTPPQQQHTANAAGGYAGYAAPGAGPG-GMMMMMGQPMYGSPPP 175

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BLAST of CSPI03G04080 vs. ExPASy Swiss-Prot
Match: Q69J40 (Nuclear transcription factor Y subunit B-10 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYB10 PE=1 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 2.6e-47
Identity = 108/173 (62.43%), Postives = 121/173 (69.94%), Query Frame = 0


Query: 1   MADSDNDSGG--GYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSE 60
           M DSDN+SGG     +  S RE DR LPIANV RIMK+ALP NAKISKDAKETVQECVSE
Sbjct: 1   MPDSDNESGGPSNAGEYASAREQDRFLPIANVSRIMKRALPANAKISKDAKETVQECVSE 60

Query: 61  FISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLA 120
           FISF+TGEASDKC  EKRKTINGDDLLWAM TLGFEDY+DPLKLYL +FRE+EGE+   A
Sbjct: 61  FISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYIDPLKLYLHKFRELEGEKAIGA 120

Query: 121 SRDSASSAANSAAAGNSG----FFDGGGEFGGAGGSGMGMGMTTTMPPNVYGS 168
           +      AA+S  +G+        D     GG G  G G GM   M   +YGS
Sbjct: 121 AGSGGGGAASSGGSGSGSGSHHHQDASRNNGGYGMYGGGGGMIMMMGQPMYGS 173

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BLAST of CSPI03G04080 vs. ExPASy Swiss-Prot
Match: Q9SLG0 (Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana OX=3702 GN=NFYB1 PE=1 SV=2)

HSP 1 Score: 166.8 bits (421), Expect = 2.4e-40
Identity = 87/137 (63.50%), Postives = 102/137 (74.45%), Query Frame = 0


Query: 1   MADS-DNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEF 60
           MAD+  + +G G +   S RE DR LPIAN+ RIMKKALP N KI KDAK+TVQECVSEF
Sbjct: 1   MADTPSSPAGDGGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEF 60

Query: 61  ISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLAS 120
           ISF+T EASDKC  EKRKT+NGDDLLWAMATLGFEDY++PLK+YL R+RE+EG+     S
Sbjct: 61  ISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGDNK--GS 120

Query: 121 RDSASSAANSAAAGNSG 137
             S   +   A  G SG
Sbjct: 121 GKSGDGSNRDAGGGVSG 135

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BLAST of CSPI03G04080 vs. ExPASy TrEMBL
Match: A0A0A0L4U4 (CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G047800 PE=3 SV=1)

HSP 1 Score: 367.5 bits (942), Expect = 3.4e-98
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0


Query: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60
           MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI
Sbjct: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60

Query: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR 120
           SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR
Sbjct: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR 120

Query: 121 DSASSAANSAAAGNSGFFDGGGEFGGAGGSGMGMGMTTTMPPNVYGSNGPRWDGPGFSTT 180
           DSASSAANSAAAGNSGFFDGGGEFGGAGGSGMGMGMTTTMPPNVYGSNGPRWDGPGFSTT
Sbjct: 121 DSASSAANSAAAGNSGFFDGGGEFGGAGGSGMGMGMTTTMPPNVYGSNGPRWDGPGFSTT 180

Query: 181 GRPR 185
           GRPR
Sbjct: 181 GRPR 184

[Close]

BLAST of CSPI03G04080 vs. ExPASy TrEMBL
Match: A0A5A7VDK6 (Nuclear transcription factor Y subunit B-3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00130 PE=3 SV=1)

HSP 1 Score: 346.3 bits (887), Expect = 8.0e-92
Identity = 176/185 (95.14%), Postives = 177/185 (95.68%), Query Frame = 0


Query: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60
           MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI
Sbjct: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60

Query: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR 120
           SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR
Sbjct: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR 120

Query: 121 DS-ASSAANSAAAGNSGFFDGGGEFGGAGGSGMGMGMTTTMPPNVYGSNGPRWDGPGFST 180
           DS ASSA NSA AGNSGFFDGGGEFGG  G GMGMGMT  MPPNVYGS+GPRWDGPGFST
Sbjct: 121 DSAASSAPNSAVAGNSGFFDGGGEFGGGMGMGMGMGMTMAMPPNVYGSDGPRWDGPGFST 180

Query: 181 TGRPR 185
           TGRPR
Sbjct: 181 TGRPR 185

[Close]

BLAST of CSPI03G04080 vs. ExPASy TrEMBL
Match: A0A1S3BL47 (nuclear transcription factor Y subunit B-3-like OS=Cucumis melo OX=3656 GN=LOC103491025 PE=3 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 1.5e-90
Identity = 177/189 (93.65%), Postives = 178/189 (94.18%), Query Frame = 0


Query: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60
           MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI
Sbjct: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60

Query: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR 120
           SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR
Sbjct: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR 120

Query: 121 DS-ASSAANSAAAGNSGFFDGGGEFGG----AGGSGMGMGMTTTMPPNVYGSNGPRWDGP 180
           DS ASSA NSAAAGNSGFFDGGGEFGG      G GMGMGMT  MPPNVYGS+GPRWDGP
Sbjct: 121 DSAASSAPNSAAAGNSGFFDGGGEFGGGMGMGMGMGMGMGMTMAMPPNVYGSDGPRWDGP 180

Query: 181 GFSTTGRPR 185
           GFSTTGRPR
Sbjct: 181 GFSTTGRPR 189

[Close]

BLAST of CSPI03G04080 vs. ExPASy TrEMBL
Match: A0A6J1HQB9 (nuclear transcription factor Y subunit B-3-like OS=Cucurbita maxima OX=3661 GN=LOC111465124 PE=3 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 6.6e-86
Identity = 168/188 (89.36%), Postives = 171/188 (90.96%), Query Frame = 0


Query: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60
           MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKE VQECVSEFI
Sbjct: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKEIVQECVSEFI 60

Query: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR 120
           SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERT LASR
Sbjct: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTALASR 120

Query: 121 DSASSAA----NSAAAGNSGFFDGGGEFGGAGGSGMGMGMTTTMPPNVYGSNGPRWDGPG 180
           DS+SSAA     +A A NS FFDGGGEFGG      GMGMT TMPPNVYGSNGPRWDGPG
Sbjct: 121 DSSSSAAATATAAAGAANSAFFDGGGEFGG------GMGMTMTMPPNVYGSNGPRWDGPG 180

Query: 181 FSTTGRPR 185
           F+TTGRPR
Sbjct: 181 FTTTGRPR 182

[Close]

BLAST of CSPI03G04080 vs. ExPASy TrEMBL
Match: A0A6J1F1D9 (nuclear transcription factor Y subunit B-3-like OS=Cucurbita moschata OX=3662 GN=LOC111438720 PE=3 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 8.9e-83
Identity = 166/188 (88.30%), Postives = 169/188 (89.89%), Query Frame = 0


Query: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60
           MADSDNDSGGGYQKSPSPREHD LLPIANVGRIMKKALPGNAKISKDAKE VQECVSEFI
Sbjct: 1   MADSDNDSGGGYQKSPSPREHDGLLPIANVGRIMKKALPGNAKISKDAKEIVQECVSEFI 60

Query: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR 120
           SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERT LASR
Sbjct: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTALASR 120

Query: 121 DSASS----AANSAAAGNSGFFDGGGEFGGAGGSGMGMGMTTTMPPNVYGSNGPRWDGPG 180
           DS+SS    AA +A A NS FFDGGGEFGG      GMGM  TMPPNVYGSNGPRWDGPG
Sbjct: 121 DSSSSASAVAAAAAGAANSTFFDGGGEFGG------GMGM--TMPPNVYGSNGPRWDGPG 180

Query: 181 FSTTGRPR 185
           F+TTGRPR
Sbjct: 181 FTTTGRPR 180

[Close]

BLAST of CSPI03G04080 vs. NCBI nr
Match: XP_004148262.1 (nuclear transcription factor Y subunit B-3 [Cucumis sativus] >KGN56019.1 hypothetical protein Csa_009503 [Cucumis sativus])

HSP 1 Score: 367.5 bits (942), Expect = 6.9e-98
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0


Query: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60
           MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI
Sbjct: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60

Query: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR 120
           SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR
Sbjct: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR 120

Query: 121 DSASSAANSAAAGNSGFFDGGGEFGGAGGSGMGMGMTTTMPPNVYGSNGPRWDGPGFSTT 180
           DSASSAANSAAAGNSGFFDGGGEFGGAGGSGMGMGMTTTMPPNVYGSNGPRWDGPGFSTT
Sbjct: 121 DSASSAANSAAAGNSGFFDGGGEFGGAGGSGMGMGMTTTMPPNVYGSNGPRWDGPGFSTT 180

Query: 181 GRPR 185
           GRPR
Sbjct: 181 GRPR 184

[Close]

BLAST of CSPI03G04080 vs. NCBI nr
Match: KAA0065728.1 (nuclear transcription factor Y subunit B-3-like [Cucumis melo var. makuwa] >TYK13754.1 nuclear transcription factor Y subunit B-3-like [Cucumis melo var. makuwa])

HSP 1 Score: 346.3 bits (887), Expect = 1.7e-91
Identity = 176/185 (95.14%), Postives = 177/185 (95.68%), Query Frame = 0


Query: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60
           MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI
Sbjct: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60

Query: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR 120
           SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR
Sbjct: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR 120

Query: 121 DS-ASSAANSAAAGNSGFFDGGGEFGGAGGSGMGMGMTTTMPPNVYGSNGPRWDGPGFST 180
           DS ASSA NSA AGNSGFFDGGGEFGG  G GMGMGMT  MPPNVYGS+GPRWDGPGFST
Sbjct: 121 DSAASSAPNSAVAGNSGFFDGGGEFGGGMGMGMGMGMTMAMPPNVYGSDGPRWDGPGFST 180

Query: 181 TGRPR 185
           TGRPR
Sbjct: 181 TGRPR 185

[Close]

BLAST of CSPI03G04080 vs. NCBI nr
Match: XP_008449032.2 (PREDICTED: nuclear transcription factor Y subunit B-3-like [Cucumis melo])

HSP 1 Score: 342.0 bits (876), Expect = 3.1e-90
Identity = 177/189 (93.65%), Postives = 178/189 (94.18%), Query Frame = 0


Query: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60
           MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI
Sbjct: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60

Query: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR 120
           SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR
Sbjct: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR 120

Query: 121 DS-ASSAANSAAAGNSGFFDGGGEFGG----AGGSGMGMGMTTTMPPNVYGSNGPRWDGP 180
           DS ASSA NSAAAGNSGFFDGGGEFGG      G GMGMGMT  MPPNVYGS+GPRWDGP
Sbjct: 121 DSAASSAPNSAAAGNSGFFDGGGEFGGGMGMGMGMGMGMGMTMAMPPNVYGSDGPRWDGP 180

Query: 181 GFSTTGRPR 185
           GFSTTGRPR
Sbjct: 181 GFSTTGRPR 189

[Close]

BLAST of CSPI03G04080 vs. NCBI nr
Match: XP_022965194.1 (nuclear transcription factor Y subunit B-3-like [Cucurbita maxima])

HSP 1 Score: 326.6 bits (836), Expect = 1.4e-85
Identity = 168/188 (89.36%), Postives = 171/188 (90.96%), Query Frame = 0


Query: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60
           MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKE VQECVSEFI
Sbjct: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKEIVQECVSEFI 60

Query: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR 120
           SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERT LASR
Sbjct: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTALASR 120

Query: 121 DSASSAA----NSAAAGNSGFFDGGGEFGGAGGSGMGMGMTTTMPPNVYGSNGPRWDGPG 180
           DS+SSAA     +A A NS FFDGGGEFGG      GMGMT TMPPNVYGSNGPRWDGPG
Sbjct: 121 DSSSSAAATATAAAGAANSAFFDGGGEFGG------GMGMTMTMPPNVYGSNGPRWDGPG 180

Query: 181 FSTTGRPR 185
           F+TTGRPR
Sbjct: 181 FTTTGRPR 182

[Close]

BLAST of CSPI03G04080 vs. NCBI nr
Match: XP_038905070.1 (nuclear transcription factor Y subunit B-3-like [Benincasa hispida])

HSP 1 Score: 325.5 bits (833), Expect = 3.0e-85
Identity = 167/184 (90.76%), Postives = 171/184 (92.93%), Query Frame = 0


Query: 1   MADSDNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60
           MADSDNDSGGG QKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI
Sbjct: 1   MADSDNDSGGGCQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFI 60

Query: 61  SFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLASR 120
           SFVTGEAS+KCHNEKRKTINGDDLLWAMATLGFEDYVDPLK YLQRFREIEGERTTLASR
Sbjct: 61  SFVTGEASEKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKFYLQRFREIEGERTTLASR 120

Query: 121 DSASSAANSAAAGNSGFFDGGGEFGGAGGSGMGMGMTTTMPPNVYGSNGPRWDGPGFSTT 180
           DSA++AANSAAA NS FFDGGGEF    G GMGM   T MPPNVYGSNGPRWDGPGF+TT
Sbjct: 121 DSANAAANSAAAANSTFFDGGGEF----GDGMGM---TMMPPNVYGSNGPRWDGPGFTTT 177

Query: 181 GRPR 185
           GRPR
Sbjct: 181 GRPR 177

[Close]

BLAST of CSPI03G04080 vs. TAIR 10
Match: AT5G47640.1 (nuclear factor Y, subunit B2 )

HSP 1 Score: 202.2 bits (513), Expect = 3.6e-52
Identity = 118/192 (61.46%), Postives = 127/192 (66.15%), Query Frame = 0


Query: 1   MADSDNDSGGGY-------QKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQ 60
           M DSD DSGGG        Q S SPRE DR LPIANV RIMKKALP NAKISKDAKET+Q
Sbjct: 1   MGDSDRDSGGGQNGNNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQ 60

Query: 61  ECVSEFISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGE 120
           ECVSEFISFVTGEASDKC  EKRKTINGDDLLWAM TLGFEDYV+PLK+YLQRFREIEGE
Sbjct: 61  ECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGE 120

Query: 121 RTTLASRDSASSAANSAAAGNSGFFDGGGEFGGAGGSGMGMGMTTTMPPN-VYGSNGPRW 180
           RT L    +                DGGG +GG GG             N +YG+ G   
Sbjct: 121 RTGLGRPQTGGEVGEHQ---RDAVGDGGGFYGGGGGMQYHQHHQFLHQQNHMYGATGGGS 180

Query: 181 DGPGFSTTGRPR 185
           D  G + +GR R
Sbjct: 181 DSGGGAASGRTR 189

[Close]

BLAST of CSPI03G04080 vs. TAIR 10
Match: AT4G14540.1 (nuclear factor Y, subunit B3 )

HSP 1 Score: 198.0 bits (502), Expect = 6.8e-51
Identity = 112/162 (69.14%), Postives = 122/162 (75.31%), Query Frame = 0


Query: 1   MADSDNDSGGGYQ-KSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEF 60
           MADSDNDSGG     + S RE DR LPIANV RIMKKALP NAKISKDAKETVQECVSEF
Sbjct: 1   MADSDNDSGGHKDGGNASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEF 60

Query: 61  ISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLAS 120
           ISF+TGEASDKC  EKRKTINGDDLLWAM TLGFEDYV+PLK+YLQ++RE+EGE+TT A 
Sbjct: 61  ISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTTAG 120

Query: 121 RDSASSAANSAAAGNSGFFDGGGEFGGAGGSGM-GMGMTTTM 161
           R            G  G   GGG   G+GG+ M G GM TTM
Sbjct: 121 RQGDKE-------GGGG---GGGAGSGSGGAPMYGGGMVTTM 152

[Close]

BLAST of CSPI03G04080 vs. TAIR 10
Match: AT2G38880.2 (nuclear factor Y, subunit B1 )

HSP 1 Score: 166.8 bits (421), Expect = 1.7e-41
Identity = 87/137 (63.50%), Postives = 102/137 (74.45%), Query Frame = 0


Query: 1   MADS-DNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEF 60
           MAD+  + +G G +   S RE DR LPIAN+ RIMKKALP N KI KDAK+TVQECVSEF
Sbjct: 1   MADTPSSPAGDGGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEF 60

Query: 61  ISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLAS 120
           ISF+T EASDKC  EKRKT+NGDDLLWAMATLGFEDY++PLK+YL R+RE+EG+     S
Sbjct: 61  ISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGDNK--GS 120

Query: 121 RDSASSAANSAAAGNSG 137
             S   +   A  G SG
Sbjct: 121 GKSGDGSNRDAGGGVSG 135

[Close]

BLAST of CSPI03G04080 vs. TAIR 10
Match: AT2G38880.3 (nuclear factor Y, subunit B1 )

HSP 1 Score: 166.8 bits (421), Expect = 1.7e-41
Identity = 87/137 (63.50%), Postives = 102/137 (74.45%), Query Frame = 0


Query: 1   MADS-DNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEF 60
           MAD+  + +G G +   S RE DR LPIAN+ RIMKKALP N KI KDAK+TVQECVSEF
Sbjct: 1   MADTPSSPAGDGGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEF 60

Query: 61  ISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLAS 120
           ISF+T EASDKC  EKRKT+NGDDLLWAMATLGFEDY++PLK+YL R+RE+EG+     S
Sbjct: 61  ISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGDNK--GS 120

Query: 121 RDSASSAANSAAAGNSG 137
             S   +   A  G SG
Sbjct: 121 GKSGDGSNRDAGGGVSG 135

[Close]

BLAST of CSPI03G04080 vs. TAIR 10
Match: AT2G38880.1 (nuclear factor Y, subunit B1 )

HSP 1 Score: 166.8 bits (421), Expect = 1.7e-41
Identity = 87/137 (63.50%), Postives = 102/137 (74.45%), Query Frame = 0


Query: 1   MADS-DNDSGGGYQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEF 60
           MAD+  + +G G +   S RE DR LPIAN+ RIMKKALP N KI KDAK+TVQECVSEF
Sbjct: 1   MADTPSSPAGDGGESGGSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEF 60

Query: 61  ISFVTGEASDKCHNEKRKTINGDDLLWAMATLGFEDYVDPLKLYLQRFREIEGERTTLAS 120
           ISF+T EASDKC  EKRKT+NGDDLLWAMATLGFEDY++PLK+YL R+RE+EG+     S
Sbjct: 61  ISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGDNK--GS 120

Query: 121 RDSASSAANSAAAGNSG 137
             S   +   A  G SG
Sbjct: 121 GKSGDGSNRDAGGGVSG 135

The following BLAST results are available for this feature:

BLAST of CSPI03G04080 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FGJ3	5.1e-51	61.46	Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
O23310	9.5e-50	69.14	Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q75IZ7	3.1e-48	63.64	Nuclear transcription factor Y subunit B-8 OS=Oryza sativa subsp. japonica OX=39...	[more]
Q69J40	2.6e-47	62.43	Nuclear transcription factor Y subunit B-10 OS=Oryza sativa subsp. japonica OX=3...	[more]
Q9SLG0	2.4e-40	63.50	Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]

BLAST of CSPI03G04080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4U4	3.4e-98	100.00	CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G0478...	[more]
A0A5A7VDK6	8.0e-92	95.14	Nuclear transcription factor Y subunit B-3-like OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S3BL47	1.5e-90	93.65	nuclear transcription factor Y subunit B-3-like OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1HQB9	6.6e-86	89.36	nuclear transcription factor Y subunit B-3-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1F1D9	8.9e-83	88.30	nuclear transcription factor Y subunit B-3-like OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of CSPI03G04080 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004148262.1	6.9e-98	100.00	nuclear transcription factor Y subunit B-3 [Cucumis sativus] >KGN56019.1 hypothe...	[more]
KAA0065728.1	1.7e-91	95.14	nuclear transcription factor Y subunit B-3-like [Cucumis melo var. makuwa] >TYK1...	[more]
XP_008449032.2	3.1e-90	93.65	PREDICTED: nuclear transcription factor Y subunit B-3-like [Cucumis melo]	[more]
XP_022965194.1	1.4e-85	89.36	nuclear transcription factor Y subunit B-3-like [Cucurbita maxima]	[more]
XP_038905070.1	3.0e-85	90.76	nuclear transcription factor Y subunit B-3-like [Benincasa hispida]	[more]

BLAST of CSPI03G04080 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G47640.1	3.6e-52	61.46	nuclear factor Y, subunit B2	[more]
AT4G14540.1	6.8e-51	69.14	nuclear factor Y, subunit B3	[more]
AT2G38880.2	1.7e-41	63.50	nuclear factor Y, subunit B1	[more]
AT2G38880.3	1.7e-41	63.50	nuclear factor Y, subunit B1	[more]
AT2G38880.1	1.7e-41	63.50	nuclear factor Y, subunit B1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00615	CCAATSUBUNTA	coord: 52..70 score: 52.03 coord: 71..89 score: 39.11 coord: 90..108 score: 37.44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 153..184
None	No IPR available	PANTHER	PTHR11064:SF129	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2	coord: 1..157
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 24..88 e-value: 2.0E-27 score: 95.2
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 11..135 e-value: 4.8E-45 score: 154.8
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 22..124
IPR027113	Transcription factor NFYB/HAP3	PANTHER	PTHR11064	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	coord: 1..157
IPR003956	Transcription factor, NFYB/HAP3, conserved site	PROSITE	PS00685	NFYB_HAP3	coord: 55..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G04080.1	CSPI03G04080.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016602	CCAAT-binding factor complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding
molecular_function	GO:0043565	sequence-specific DNA binding