Cucsat.G8748 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G8748
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Pentatricopeptide repeat-containing protein
Location	ctg1558: 2124571 .. 2125792 (+)
RNA-Seq Expression	Cucsat.G8748
Synteny	Cucsat.G8748

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TGATATGTATGCAAAATGTGGAAGCATCGTGGAGGCTCGTCAATTATTTGACTTGATGGTAGACAAGAATGTGGTAACCTGGAATGCCATGATAACTGGTTATGGTCTCCATGGACATGGCAAGGAAGCACTGAAACTCTTTTATGAGATGTTGCAATCTGGGATTCCACCGACAGGTGTTACTTTCCTTTCTATCTTGTATGCTTGCAGTCACTCTGGCTTGGTGAGTGAGGGAAATGAAATTTTCCACTCTATGGCTAATAATTATGGTTTTCAGCCCATGAGTGAGCACTATGCTTGCATGGTTGACATACTTGGGAGAGCTGGACAACTAACAAATGCCTTGGAGTTTATTGAAAGAATGCCACTGGAGCCTGGCCCAGCTGTTTGGGGTGCACTGCTTGGTGCTTGCATGATTCACAAGAATACAGAGATGGCCAATGTTGCTTCCAAAAGACTTTTTCAATTGGACCCAGAAAATGTGGGGTACTATGTTCTACTTTCTAACATATATTCTACTGACAGGAATTTCCCCAAAGCTGCTTCAGTAAGACAAGTTGTTAAGAAGAGAAAACTAGCAAAAACGCCTGGTTGCACTCTAATTGAGATTGACGATCAACAATATGTGTTCACATCGGGGGATCGATCCCATCCTCAGGCCACAGCCATTTTTGAGATGCTAGAGAAGTTAACAGGGAAAATGAGAGAGGCTGGATATCAGGCAGAAACTGTCACTACTGCTTTGCATGATGTAGAGGATGAAGAGAAGGAGTTAATGGTGAATGTCCACAGTGAAAAATTAGCAATTGCTTTTGGGCTTATTTCAACCAAGCCTGGAACTGAAATTAGGATTATCAAGAACCTCCGAGTTTGTCTAGATTGTCATACTGCAACTAAATTTATATCAAAGATCACAGAGAGAGTGATTGTTGTTAGGGATGCTAATAGATTCCATCATTTCAAAAATGGTATTTGTTCATGTGGAGACTACTGGTGAAAATAACATTCCAGTGGCAGTTAAGATTTTTGGATTGGGGGAACCATAAAAGCCGGAAGCCATTGACATTTCATGATGCAGTTGAAATAATTTATTAATTGTAGATACTATGATTATTTTCAGAAAAGGTTAAACTTAACTCAGGAGAATCATTAGATATTTATTGATATGCTATGAACCATGTCAATACAAGATTATACGGTTATTCTTGTCGGATAGAAATGT

Coding sequence (CDS)

ATGAGATGTTGCAATCTGGGATTCCACCGACAGCCCATGAGTGAGCACTATGCTTGCATGGTTGACATACTTGGGAGAGCTGGACAACTAACAAATGCCTTGGAGTTTATTGAAAGAATGCCACTGGAGCCTGGCCCAGCTGTTTGGGGTGCACTGCTTGGTGCTTGCATGATTCACAAGAATACAGAGATGGCCAATGTTGCTTCCAAAAGACTTTTTCAATTGGACCCAGAAAATGTGGGGTACTATGTTCTACTTTCTAACATATATTCTACTGACAGGAATTTCCCCAAAGCTGCTTCAGTAAGACAAGTTGTTAAGAAGAGAAAACTAGCAAAAACGCCTGGTTGCACTCTAATTGAGATTGACGATCAACAATATGTGTTCACATCGGGGGATCGATCCCATCCTCAGGCCACAGCCATTTTTGAGATGCTAGAGAAGTTAACAGGGAAAATGAGAGAGGCTGGATATCAGGCAGAAACTGTCACTACTGCTTTGCATGATGTAGAGGATGAAGAGAAGGAGTTAATGGTGAATGTCCACAGTGAAAAATTAGCAATTGCTTTTGGGCTTATTTCAACCAAGCCTGGAACTGAAATTAGGATTATCAAGAACCTCCGAGTTTGTCTAGATTGTCATACTGCAACTAAATTTATATCAAAGATCACAGAGAGAGTGATTGTTGTTAGGGATGCTAATAGATTCCATCATTTCAAAAATGGTATTTGTTCATGTGGAGACTACTGGTGA

Protein sequence

MRCCNLGFHRQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFTSGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSEKLAIAFGLISTKPGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGICSCGDYW

Homology

[Close]

BLAST of Cucsat.G8748 vs. ExPASy Swiss-Prot
Match: Q9SUH6 (Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana OX=3702 GN=DYW9 PE=2 SV=1)

HSP 1 Score: 375.6 bits (963), Expect = 4.5e-103
Identity = 178/240 (74.17%), Postives = 205/240 (85.42%), Query Frame = 0


Query: 11  QPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASK 70
           +P  +HYACMVDILGRAG L  AL+FIE M +EPG +VW  LLGAC IHK+T +A   S+
Sbjct: 554 EPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSE 613

Query: 71  RLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFT 130
           +LF+LDP+NVGY+VLLSNI+S DRN+P+AA+VRQ  KKRKLAK PG TLIEI +  +VFT
Sbjct: 614 KLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFT 673

Query: 131 SGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSEKLAIAF 190
           SGD+SHPQ   I+E LEKL GKMREAGYQ ET   ALHDVE+EE+ELMV VHSE+LAIAF
Sbjct: 674 SGDQSHPQVKEIYEKLEKLEGKMREAGYQPET-ELALHDVEEEERELMVKVHSERLAIAF 733

Query: 191 GLISTKPGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGICSCGDYW 250
           GLI+T+PGTEIRIIKNLRVCLDCHT TK ISKITERVIVVRDANRFHHFK+G+CSCGDYW
Sbjct: 734 GLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792

[Close]

BLAST of Cucsat.G8748 vs. ExPASy Swiss-Prot
Match: Q9LW32 (Pentatricopeptide repeat-containing protein At3g26782, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H34 PE=2 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 1.3e-73
Identity = 127/243 (52.26%), Postives = 170/243 (69.96%), Query Frame = 0


Query: 8   FHRQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANV 67
           F  +P  EHY CMVD+LGRAG L  A + I+RM ++P   +W +LL AC IHKN E+A +
Sbjct: 418 FGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEI 477

Query: 68  ASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQY 127
           +  RLF+LD  N GYY+LLS+IY+    +     VR ++K R L K PG +L+E++ + +
Sbjct: 478 SVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVH 537

Query: 128 VFTSGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSEKLA 187
           VF  GD  HPQ   I+E L +L  K+ EAGY + T ++  HDV++EEKE+ + VHSEKLA
Sbjct: 538 VFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNT-SSVCHDVDEEEKEMTLRVHSEKLA 597

Query: 188 IAFGLISTKPGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGICSCG 247
           IAFG+++T PG+ + ++KNLRVC DCH   K ISKI +R  VVRDA RFHHFK+G CSCG
Sbjct: 598 IAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCG 657

Query: 248 DYW 251
           DYW
Sbjct: 658 DYW 659

[Close]

BLAST of Cucsat.G8748 vs. ExPASy Swiss-Prot
Match: Q9SY02 (Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H24 PE=3 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 4.5e-71
Identity = 121/239 (50.63%), Postives = 171/239 (71.55%), Query Frame = 0


Query: 12  PMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASKR 71
           P S+HYACMVD+LGRAG L +A   ++ MP EP  A+WG LLGA  +H NTE+A  A+ +
Sbjct: 544 PNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADK 603

Query: 72  LFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFTS 131
           +F ++PEN G YVLLSN+Y++   +     +R  ++ + + K PG + IEI ++ + F+ 
Sbjct: 604 IFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSV 663

Query: 132 GDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSEKLAIAFG 191
           GD  HP+   IF  LE+L  +M++AGY ++T +  LHDVE+EEKE MV  HSE+LA+A+G
Sbjct: 664 GDEFHPEKDEIFAFLEELDLRMKKAGYVSKT-SVVLHDVEEEEKERMVRYHSERLAVAYG 723

Query: 192 LISTKPGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGICSCGDYW 251
           ++    G  IR+IKNLRVC DCH A K++++IT R+I++RD NRFHHFK+G CSCGDYW
Sbjct: 724 IMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRDNNRFHHFKDGSCSCGDYW 781

[Close]

BLAST of Cucsat.G8748 vs. ExPASy Swiss-Prot
Match: O81767 (Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana OX=3702 GN=EMB2758 PE=3 SV=2)

HSP 1 Score: 269.2 bits (687), Expect = 4.5e-71
Identity = 124/239 (51.88%), Postives = 171/239 (71.55%), Query Frame = 0


Query: 12  PMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASKR 71
           P  +HY CMVD+ GRAGQL  AL+FI+ M L+P  ++WGALL AC +H N ++  +AS+ 
Sbjct: 586 PSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEH 645

Query: 72  LFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFTS 131
           LF+++PE+VGY+VLLSN+Y++   +     +R +   + L KTPG + +E+D++  VF +
Sbjct: 646 LFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYT 705

Query: 132 GDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSEKLAIAFG 191
           G+++HP    ++  L  L  K++  GY  +     L DVED+EKE ++  HSE+LAIAF 
Sbjct: 706 GNQTHPMYEEMYRELTALQAKLKMIGYVPDH-RFVLQDVEDDEKEHILMSHSERLAIAFA 765

Query: 192 LISTKPGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGICSCGDYW 251
           LI+T   T IRI KNLRVC DCH+ TKFISKITER I+VRD+NRFHHFKNG+CSCGDYW
Sbjct: 766 LIATPAKTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823

[Close]

BLAST of Cucsat.G8748 vs. ExPASy Swiss-Prot
Match: Q56XI1 (Pentatricopeptide repeat-containing protein At1g09410, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H18 PE=1 SV=2)

HSP 1 Score: 267.7 bits (683), Expect = 1.3e-70
Identity = 120/244 (49.18%), Postives = 175/244 (71.72%), Query Frame = 0


Query: 8   FHRQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANV 67
           F  +P++ HYACMVD+LGRAG+   A+E I+ M +EP  AVWG+LLGAC  H   ++A  
Sbjct: 463 FGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGACRTHSQLDVAEF 522

Query: 68  ASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQY 127
            +K+L +++PEN G Y+LLSN+Y++   +   A +R+++K R + K+PGC+  E++++ +
Sbjct: 523 CAKKLIEIEPENSGTYILLSNMYASQGRWADVAELRKLMKTRLVRKSPGCSWTEVENKVH 582

Query: 128 VFTSGD-RSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSEKL 187
            FT G   SHP+  +I ++L++L G +REAGY  +  + ALHDV++EEK   +  HSE+L
Sbjct: 583 AFTRGGINSHPEQESILKILDELDGLLREAGYNPD-CSYALHDVDEEEKVNSLKYHSERL 642

Query: 188 AIAFGLISTKPGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGICSC 247
           A+A+ L+    G  IR++KNLRVC DCHTA K ISK+ ER I++RDANRFHHF+NG CSC
Sbjct: 643 AVAYALLKLSEGIPIRVMKNLRVCSDCHTAIKIISKVKEREIILRDANRFHHFRNGECSC 702

Query: 248 GDYW 251
            DYW
Sbjct: 703 KDYW 705

[Close]

BLAST of Cucsat.G8748 vs. NCBI nr
Match: KGN61216.1 (hypothetical protein Csa_006224 [Cucumis sativus])

HSP 1 Score: 493 bits (1268), Expect = 9.12e-168
Identity = 243/246 (98.78%), Postives = 243/246 (98.78%), Query Frame = 0


Query: 5   NLGFHRQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEM 64
           N GF  QPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEM
Sbjct: 541 NYGF--QPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEM 600

Query: 65  ANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDD 124
           ANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDD
Sbjct: 601 ANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDD 660

Query: 125 QQYVFTSGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSE 184
           QQYVFTSGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSE
Sbjct: 661 QQYVFTSGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSE 720

Query: 185 KLAIAFGLISTKPGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGIC 244
           KLAIAFGLISTKPGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGIC
Sbjct: 721 KLAIAFGLISTKPGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGIC 780

Query: 245 SCGDYW 250
           SCGDYW
Sbjct: 781 SCGDYW 784

[Close]

BLAST of Cucsat.G8748 vs. NCBI nr
Match: XP_004152852.1 (pentatricopeptide repeat-containing protein At4g30700 [Cucumis sativus])

HSP 1 Score: 493 bits (1268), Expect = 1.03e-167
Identity = 243/246 (98.78%), Postives = 243/246 (98.78%), Query Frame = 0


Query: 5   NLGFHRQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEM 64
           N GF  QPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEM
Sbjct: 545 NYGF--QPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEM 604

Query: 65  ANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDD 124
           ANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDD
Sbjct: 605 ANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDD 664

Query: 125 QQYVFTSGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSE 184
           QQYVFTSGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSE
Sbjct: 665 QQYVFTSGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSE 724

Query: 185 KLAIAFGLISTKPGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGIC 244
           KLAIAFGLISTKPGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGIC
Sbjct: 725 KLAIAFGLISTKPGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGIC 784

Query: 245 SCGDYW 250
           SCGDYW
Sbjct: 785 SCGDYW 788

[Close]

BLAST of Cucsat.G8748 vs. NCBI nr
Match: XP_016902152.1 (PREDICTED: pentatricopeptide repeat-containing protein At4g30700 [Cucumis melo] >KAA0047626.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK08282.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 485 bits (1248), Expect = 1.06e-164
Identity = 237/240 (98.75%), Postives = 239/240 (99.58%), Query Frame = 0


Query: 11  QPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASK 70
           QPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTE+ANVASK
Sbjct: 549 QPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEIANVASK 608

Query: 71  RLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFT 130
           RLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEI DQQYVFT
Sbjct: 609 RLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIGDQQYVFT 668

Query: 131 SGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSEKLAIAF 190
           SGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSEKLAIAF
Sbjct: 669 SGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSEKLAIAF 728

Query: 191 GLISTKPGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGICSCGDYW 250
           GLIST+PGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGICSCGDYW
Sbjct: 729 GLISTEPGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGICSCGDYW 788

[Close]

BLAST of Cucsat.G8748 vs. NCBI nr
Match: XP_038889958.1 (pentatricopeptide repeat-containing protein At4g30700-like isoform X2 [Benincasa hispida] >XP_038889959.1 pentatricopeptide repeat-containing protein At4g30700-like isoform X2 [Benincasa hispida])

HSP 1 Score: 479 bits (1233), Expect = 1.94e-162
Identity = 236/246 (95.93%), Postives = 241/246 (97.97%), Query Frame = 0


Query: 5   NLGFHRQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEM 64
           N GF  QPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTE+
Sbjct: 545 NYGF--QPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEI 604

Query: 65  ANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDD 124
           A+VASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEI +
Sbjct: 605 AHVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIGN 664

Query: 125 QQYVFTSGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSE 184
           QQYVFTSGD+SHPQATAIF MLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSE
Sbjct: 665 QQYVFTSGDQSHPQATAIFAMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSE 724

Query: 185 KLAIAFGLISTKPGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGIC 244
           KLAIAFGLIST+PGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGIC
Sbjct: 725 KLAIAFGLISTEPGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGIC 784

Query: 245 SCGDYW 250
           SCGDYW
Sbjct: 785 SCGDYW 788

[Close]

BLAST of Cucsat.G8748 vs. NCBI nr
Match: XP_038889951.1 (pentatricopeptide repeat-containing protein At4g30700-like isoform X1 [Benincasa hispida] >XP_038889952.1 pentatricopeptide repeat-containing protein At4g30700-like isoform X1 [Benincasa hispida] >XP_038889953.1 pentatricopeptide repeat-containing protein At4g30700-like isoform X1 [Benincasa hispida] >XP_038889954.1 pentatricopeptide repeat-containing protein At4g30700-like isoform X1 [Benincasa hispida] >XP_038889955.1 pentatricopeptide repeat-containing protein At4g30700-like isoform X1 [Benincasa hispida] >XP_038889956.1 pentatricopeptide repeat-containing protein At4g30700-like isoform X1 [Benincasa hispida] >XP_038889957.1 pentatricopeptide repeat-containing protein At4g30700-like isoform X1 [Benincasa hispida])

HSP 1 Score: 479 bits (1233), Expect = 2.18e-162
Identity = 236/246 (95.93%), Postives = 241/246 (97.97%), Query Frame = 0


Query: 5   NLGFHRQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEM 64
           N GF  QPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTE+
Sbjct: 549 NYGF--QPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEI 608

Query: 65  ANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDD 124
           A+VASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEI +
Sbjct: 609 AHVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIGN 668

Query: 125 QQYVFTSGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSE 184
           QQYVFTSGD+SHPQATAIF MLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSE
Sbjct: 669 QQYVFTSGDQSHPQATAIFAMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSE 728

Query: 185 KLAIAFGLISTKPGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGIC 244
           KLAIAFGLIST+PGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGIC
Sbjct: 729 KLAIAFGLISTEPGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGIC 788

Query: 245 SCGDYW 250
           SCGDYW
Sbjct: 789 SCGDYW 792

[Close]

BLAST of Cucsat.G8748 vs. ExPASy TrEMBL
Match: A0A0A0LMK7 (DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G070330 PE=3 SV=1)

HSP 1 Score: 493 bits (1268), Expect = 4.42e-168
Identity = 243/246 (98.78%), Postives = 243/246 (98.78%), Query Frame = 0


Query: 5   NLGFHRQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEM 64
           N GF  QPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEM
Sbjct: 541 NYGF--QPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEM 600

Query: 65  ANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDD 124
           ANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDD
Sbjct: 601 ANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDD 660

Query: 125 QQYVFTSGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSE 184
           QQYVFTSGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSE
Sbjct: 661 QQYVFTSGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSE 720

Query: 185 KLAIAFGLISTKPGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGIC 244
           KLAIAFGLISTKPGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGIC
Sbjct: 721 KLAIAFGLISTKPGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGIC 780

Query: 245 SCGDYW 250
           SCGDYW
Sbjct: 781 SCGDYW 784

[Close]

BLAST of Cucsat.G8748 vs. ExPASy TrEMBL
Match: A0A5A7U078 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G00560 PE=3 SV=1)

HSP 1 Score: 485 bits (1248), Expect = 5.15e-165
Identity = 237/240 (98.75%), Postives = 239/240 (99.58%), Query Frame = 0


Query: 11  QPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASK 70
           QPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTE+ANVASK
Sbjct: 549 QPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEIANVASK 608

Query: 71  RLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFT 130
           RLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEI DQQYVFT
Sbjct: 609 RLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIGDQQYVFT 668

Query: 131 SGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSEKLAIAF 190
           SGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSEKLAIAF
Sbjct: 669 SGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSEKLAIAF 728

Query: 191 GLISTKPGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGICSCGDYW 250
           GLIST+PGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGICSCGDYW
Sbjct: 729 GLISTEPGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGICSCGDYW 788

[Close]

BLAST of Cucsat.G8748 vs. ExPASy TrEMBL
Match: A0A1S4E1Q1 (pentatricopeptide repeat-containing protein At4g30700 OS=Cucumis melo OX=3656 GN=LOC103492100 PE=3 SV=1)

HSP 1 Score: 485 bits (1248), Expect = 5.15e-165
Identity = 237/240 (98.75%), Postives = 239/240 (99.58%), Query Frame = 0


Query: 11  QPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASK 70
           QPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTE+ANVASK
Sbjct: 549 QPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEIANVASK 608

Query: 71  RLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFT 130
           RLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEI DQQYVFT
Sbjct: 609 RLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIGDQQYVFT 668

Query: 131 SGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSEKLAIAF 190
           SGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSEKLAIAF
Sbjct: 669 SGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSEKLAIAF 728

Query: 191 GLISTKPGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGICSCGDYW 250
           GLIST+PGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGICSCGDYW
Sbjct: 729 GLISTEPGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGICSCGDYW 788

[Close]

BLAST of Cucsat.G8748 vs. ExPASy TrEMBL
Match: A0A6J1IEL0 (pentatricopeptide repeat-containing protein At4g30700 OS=Cucurbita maxima OX=3661 GN=LOC111471980 PE=3 SV=1)

HSP 1 Score: 468 bits (1203), Expect = 3.10e-158
Identity = 228/246 (92.68%), Postives = 238/246 (96.75%), Query Frame = 0


Query: 5   NLGFHRQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEM 64
           N GF  QPMSEHYACMVDI GRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNT++
Sbjct: 545 NFGF--QPMSEHYACMVDIFGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTDI 604

Query: 65  ANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDD 124
           A+VAS+RLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKR LAKTPGCTLIEIDD
Sbjct: 605 AHVASERLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRNLAKTPGCTLIEIDD 664

Query: 125 QQYVFTSGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSE 184
           QQ+VFTSGD+SHP+ATAI+ MLEKL GKMREAGYQAETVTTALHDVEDEEKELMVNVHSE
Sbjct: 665 QQHVFTSGDQSHPRATAIYAMLEKLIGKMREAGYQAETVTTALHDVEDEEKELMVNVHSE 724

Query: 185 KLAIAFGLISTKPGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGIC 244
           KLAIAFGLIST+PGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFK+G C
Sbjct: 725 KLAIAFGLISTEPGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKDGFC 784

Query: 245 SCGDYW 250
           SCGDYW
Sbjct: 785 SCGDYW 788

[Close]

BLAST of Cucsat.G8748 vs. ExPASy TrEMBL
Match: A0A6J1EDA0 (pentatricopeptide repeat-containing protein At4g30700 OS=Cucurbita moschata OX=3662 GN=LOC111433113 PE=3 SV=1)

HSP 1 Score: 468 bits (1203), Expect = 3.10e-158
Identity = 228/246 (92.68%), Postives = 238/246 (96.75%), Query Frame = 0


Query: 5   NLGFHRQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEM 64
           N GF  QPMSEHYACMVDI GRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNT++
Sbjct: 545 NFGF--QPMSEHYACMVDIFGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTDI 604

Query: 65  ANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDD 124
           A+VAS+RLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKR LAKTPGCTLIEIDD
Sbjct: 605 AHVASERLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRNLAKTPGCTLIEIDD 664

Query: 125 QQYVFTSGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSE 184
           QQ+VFTSGDRSHP+A AI+ MLEKL GKMREAGYQAETVTTALHDVEDEEKELMVNVHSE
Sbjct: 665 QQHVFTSGDRSHPRAMAIYAMLEKLIGKMREAGYQAETVTTALHDVEDEEKELMVNVHSE 724

Query: 185 KLAIAFGLISTKPGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGIC 244
           KLAIAFGLIST+PGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFK+G+C
Sbjct: 725 KLAIAFGLISTEPGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKDGLC 784

Query: 245 SCGDYW 250
           SCGDYW
Sbjct: 785 SCGDYW 788

The following BLAST results are available for this feature:

BLAST of Cucsat.G8748 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SUH6	4.5e-103	74.17	Pentatricopeptide repeat-containing protein At4g30700 OS=Arabidopsis thaliana OX...	[more]
Q9LW32	1.3e-73	52.26	Pentatricopeptide repeat-containing protein At3g26782, mitochondrial OS=Arabidop...	[more]
Q9SY02	4.5e-71	50.63	Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana OX...	[more]
O81767	4.5e-71	51.88	Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana OX...	[more]
Q56XI1	1.3e-70	49.18	Pentatricopeptide repeat-containing protein At1g09410, mitochondrial OS=Arabidop...	[more]

BLAST of Cucsat.G8748 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61216.1	9.12e-168	98.78	hypothetical protein Csa_006224 [Cucumis sativus]	[more]
XP_004152852.1	1.03e-167	98.78	pentatricopeptide repeat-containing protein At4g30700 [Cucumis sativus]	[more]
XP_016902152.1	1.06e-164	98.75	PREDICTED: pentatricopeptide repeat-containing protein At4g30700 [Cucumis melo] ...	[more]
XP_038889958.1	1.94e-162	95.93	pentatricopeptide repeat-containing protein At4g30700-like isoform X2 [Benincasa...	[more]
XP_038889951.1	2.18e-162	95.93	pentatricopeptide repeat-containing protein At4g30700-like isoform X1 [Benincasa...	[more]

BLAST of Cucsat.G8748 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LMK7	4.42e-168	98.78	DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G0703...	[more]
A0A5A7U078	5.15e-165	98.75	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S4E1Q1	5.15e-165	98.75	pentatricopeptide repeat-containing protein At4g30700 OS=Cucumis melo OX=3656 GN...	[more]
A0A6J1IEL0	3.10e-158	92.68	pentatricopeptide repeat-containing protein At4g30700 OS=Cucurbita maxima OX=366...	[more]
A0A6J1EDA0	3.10e-158	92.68	pentatricopeptide repeat-containing protein At4g30700 OS=Cucurbita moschata OX=3...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032867	DYW domain	PFAM	PF14432	DYW_deaminase	coord: 115..240 e-value: 3.0E-42 score: 143.5
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 2..132 e-value: 2.3E-10 score: 42.3
None	No IPR available	PANTHER	PTHR47924:SF42	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 9..244
None	No IPR available	PANTHER	PTHR47924	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 9..244

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G8748.T2	Cucsat.G8748.T2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009451	RNA modification
cellular_component	GO:0043231	intracellular membrane-bounded organelle
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0008270	zinc ion binding