Cp4.1LG16g08160 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG16g08160
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Ribosomal protein
Location	Cp4.1LG16: 7836877 .. 7839983 (-)
RNA-Seq Expression	Cp4.1LG16g08160
Synteny	Cp4.1LG16g08160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCCTCCAAATCGCTCTGATTCCGGCGATCGTCTTTCCACCGGAATAAACAGTACCCCTGCAGAATCCCCCGTTGATGGCTCGCCCGGAGATTCTGGCGGCGGAGCTGAGAAATTCAAGGGTTGTTGTGGGTTTCGAGAAAGGCTGAAGAGGCACCGTGAGGAGGTGGCCGGAAAAGTAACGGTGCCGGAGAAATTGGGAAAAGAGGAACTGCTAAAGGATTGGATCGATTACTCGGCGTTCGACAGAATCTTGGCCGCTGGTAGAATTGCGTCGGCGAGGGCGTCGCTTGTGGCGGAGGGACGGAGGGTAGAAAGTCGGTGTTGAGATGGAAAAAATCAATTTAAATTACTTTTTAATTAAGCATGATTAACGGCTTAATTAATTAATGTTATTTATAGAGAGAGATCAATACACGTCTTAATAGATTTCATTTGTATTTGTAAAACTAAAGAGCCCTACGGATTAATACGCAATAAATAAATTAAATTCTCTTTGTTTTATTTGACGATATGAAGCAACATGTCGTTTTTTGACATCGATCGTCGTCCGTCTACAAACCTATGAACGAAAAAAGCCCATTATGGATCCATAACTAAGGCCCATTAGACAACAAATTGGGCCAACAAACGGGCCCAATATCAAATTGGTAATGGGAATAGAGGCCTAGGCCCAGAGGACTCATATCCTAGCTCTATCACGAGCCCATCTTTTTGGATCGTCTCCTTTCGGTCTTCCATTATATATCTGTTTATCAGTTGGCCGCGAAAAACCCTAGTTTCGTTTCTTCTTACCAGGTATTCATCCATGTTCTTTCGAATTGAAGTTTGTTTTTGTTGAAACTGCTACTGAATCCTCTATCTGTGAAGATGTTTTTTGCGTTGTTTGTTCTTCCTGATATTAAGTTATTGTTTCTCTCGATTTGGTTCGTCTAGCTCGCTCAATTAAATCGTATTTTGATTTGGTTTTCTTCTCAGCCAGTTTGTAGCTGCTGCTTAGGGAAGACAAGGCTCCGAAAATGAGGTATGTTGGGATGTTTTTTGCTATTTAGTTTTATTTATCGTCTAGAATGTATTTTTCGGAACGAACTTGATTAGTGCTACTGTCGTTTTTATTAGCTTTTCCGGATTCATAAATTTCGTTCGTGTTCTTTATTCCTGCAAGTAGTCTAAATGCATTTGACTGAGGTAGGTTTGGAAGTATGAAGTTACAATGCTGGAATTTACTTCTGGCTTTAGTGTAGTTTGTTTATGTTTCTGCCAACACGGCAGTCACATTACTTGTTTGTGCGTTTATACCAAAATAAAATCGAGTTTATTGGAAACTTTGGTTGCTCGTATCTTTTTGTTTTATGGTTATCTTGCCATTACTGAATGTAGTTTTGTTGGTCTGTATCTGCAGCAAGCTTCAGAGCGAAGCGTTGAGAGAAGCCATTTCCTCTATCTTCGGTGATAGCAGTGAAAAGAAACGCAACTTTACTGAGACCATTGAACTTCAAATTGGACTCAAGAACTATGATCCACAGAAGGACAAGCGTTTCAGTGGATCAGTGAAGTTGCCCCATATCCCTCGCCCTAAGATGAAGATTTGCATGCTTGGAGATGCTTTGCACGTTGAAGAGGTAAATTTTACCTGATCTTAACATCTTCACTGTCATGTCCAGTAACTGTTATGTATGTTGCTTGCTTGCTTTAGTTCTGCTTTCAATGCTGCGTTTAACGCTATTTATGAGAAATTTCAACAGTAATAATGGTTTGTAGTATTTTTCATTCATATTTGATGAACGATAAGTATTATGCCGAATACTTCATGCTTACAAGCTGCAATTAGTTGGTGTGTACATAACTGGGAAAATAATGTACTTTTTTTGACATTTCATGTATGGTAAATTGAATTTGAATACTGATACACTTCATTTCTGGTTGTTTGCTTACATGTGTATGCTTTTGCTTATTATAGGCAGAGAAGATTGGTTTAGATTATATGGACGTGGAAGGTCTGAAGAAGCTAAACAAGAACAAGAAATTGGTGAAGAAACTTGCCAAAAAATATCACGCCTTTTTAGCTTCTGAAGCTGTTATCAAGCAAATTCCCCGTCTTCTGGGCCCTGGGCTCAACAAGGCAGGCAAGTGTGTTCATGACTACTAGTCATTCGGAATTTACCCTTTATCCGGTGACTCTAGTTTGGAAGCTTTTCTTAGCTTTCTCGGATTTGGTACTTTATATTCTACTTGCTGTCCAGGCTCATTATTGGCTGCATGCTTGAAAATTGAATTTCAATCTTTTCTTTGGAAGAAGCAGTCTCTTTTGTTTGTAGTTCGTACTAATATGGATATCTACATTGCCATTGCAGGAAAGTTCCCTACCCTTGTTACTCACCAAGAGTCCCTTGAGTCTAAAGTAAATGAGACGAAGGCAATGGTTAAGTTTCAGTTGAAGAAGGTTCTTTGCATGGGTGTGGCCGTGGGCAATGTTGCCATGGAGGAGAAGCAAGTTTTTCAGAACGTTCAAATGAGTGTCAATTTCCTCGTTTCCTTGTTGAAAAAGAACTGGCAAAACGTAAGTCAACTTCTCCATTTGCATACTCGAGGCTCGTCTTATTGCATGACGACAATTATATTTGTTTGTAGAATGCCTTGTCCTTTTATCTAACAATGAGATTTCGGTATTTTTTGTTCATCAGGTGAGATGCTTGTACCTGAAGAGTACTATGGGGAAGGCATATCGAGTCTTCTGAGGAATTTTCAAAACTTAGAACAGTACTGTTTGCTCTTAAATTGAAGAACCAGGTTGAGATGAAAAATTCTATGTTTATGATTGATGAAAAATTTTCCTGTTTGTTCTTTTTTTGTTTATTAAACCATTAGCTGCACAATCGTTAACACTTATGATGGGCGTAATGCTTTTTATTTTTTCCATCTTGTTTCACGATACATGTTTTGTAGATGTATTTTTTTTTAAAAAAGTATGATTCATATCTCATAATTCAAACAAAAACACCAAAATTAGCTTTAGCCCACTGACTTAAATGGTGGAAGCCTTTATTTCGTATCCACTGATTATTTAATCTTACTTTAAAAACATGTATTGATGATCTATGGCTA

mRNA sequence

ATGGTTCCTCCAAATCGCTCTGATTCCGGCGATCGTCTTTCCACCGGAATAAACAGTACCCCTGCAGAATCCCCCGTTGATGGCTCGCCCGGAGATTCTGGCGGCGGAGCTGAGAAATTCAAGGGTTGTTGTGGGTTTCGAGAAAGGCTGAAGAGGCACCGTGAGGAGGTGGCCGGAAAAGTAACGGTGCCGGAGAAATTGGGAAAAGAGGAACTGCTAAAGGATTGGATCGATTACTCGGCGTTCGACAGAATCTTGGCCGCTGGTAGAATTGCGTCGGCGAGGGCGTCGCTTGTGGCGGAGGGACGGAGGCTGCTGCTTAGGGAAGACAAGGCTCCGAAAATGAGCAAGCTTCAGAGCGAAGCGTTGAGAGAAGCCATTTCCTCTATCTTCGGTGATAGCAGTGAAAAGAAACGCAACTTTACTGAGACCATTGAACTTCAAATTGGACTCAAGAACTATGATCCACAGAAGGACAAGCGTTTCAGTGGATCAGTGAAGTTGCCCCATATCCCTCGCCCTAAGATGAAGATTTGCATGCTTGGAGATGCTTTGCACGTTGAAGAGGCAGAGAAGATTGGTTTAGATTATATGGACGTGGAAGGTCTGAAGAAGCTAAACAAGAACAAGAAATTGGTGAAGAAACTTGCCAAAAAATATCACGCCTTTTTAGCTTCTGAAGCTGTTATCAAGCAAATTCCCCGTCTTCTGGGCCCTGGGCTCAACAAGGCAGGCAAGTGCTCATTATTGGCTGCATGCTTGAAAATTGAATTTCAATCTTTTCTTTGGAAGAAGCAGTCTCTTTTGTTTGTAGTTCGTACTAATATGGATATCTACATTGCCATTGCAGGAAAGTTCCCTACCCTTGTTACTCACCAAGAGTCCCTTGAGTCTAAAGTAAATGAGACGAAGGCAATGGTTAAGTTTCAGTTGAAGAAGGTTCTTTGCATGGGTGTGGCCGTGGGCAATGTTGCCATGGAGGAGAAGCAAGTTTTTCAGAACGTTCAAATGAGTGTCAATTTCCTCGTTTCCTTGTTGAAAAAGAACTGGCAAAACGTGAGATGCTTGTACCTGAAGAGTACTATGGGGAAGGCATATCGAGTCTTCTGAGGAATTTTCAAAACTTAGAACAGTACTGTTTGCTCTTAAATTGAAGAACCAGGTTGAGATGAAAAATTCTATGTTTATGATTGATGAAAAATTTTCCTGTTTGTTCTTTTTTTGTTTATTAAACCATTAGCTGCACAATCGTTAACACTTATGATGGGCGTAATGCTTTTTATTTTTTCCATCTTGTTTCACGATACATGTTTTGTAGATGTATTTTTTTTTAAAAAAGTATGATTCATATCTCATAATTCAAACAAAAACACCAAAATTAGCTTTAGCCCACTGACTTAAATGGTGGAAGCCTTTATTTCGTATCCACTGATTATTTAATCTTACTTTAAAAACATGTATTGATGATCTATGGCTA

Coding sequence (CDS)

ATGGTTCCTCCAAATCGCTCTGATTCCGGCGATCGTCTTTCCACCGGAATAAACAGTACCCCTGCAGAATCCCCCGTTGATGGCTCGCCCGGAGATTCTGGCGGCGGAGCTGAGAAATTCAAGGGTTGTTGTGGGTTTCGAGAAAGGCTGAAGAGGCACCGTGAGGAGGTGGCCGGAAAAGTAACGGTGCCGGAGAAATTGGGAAAAGAGGAACTGCTAAAGGATTGGATCGATTACTCGGCGTTCGACAGAATCTTGGCCGCTGGTAGAATTGCGTCGGCGAGGGCGTCGCTTGTGGCGGAGGGACGGAGGCTGCTGCTTAGGGAAGACAAGGCTCCGAAAATGAGCAAGCTTCAGAGCGAAGCGTTGAGAGAAGCCATTTCCTCTATCTTCGGTGATAGCAGTGAAAAGAAACGCAACTTTACTGAGACCATTGAACTTCAAATTGGACTCAAGAACTATGATCCACAGAAGGACAAGCGTTTCAGTGGATCAGTGAAGTTGCCCCATATCCCTCGCCCTAAGATGAAGATTTGCATGCTTGGAGATGCTTTGCACGTTGAAGAGGCAGAGAAGATTGGTTTAGATTATATGGACGTGGAAGGTCTGAAGAAGCTAAACAAGAACAAGAAATTGGTGAAGAAACTTGCCAAAAAATATCACGCCTTTTTAGCTTCTGAAGCTGTTATCAAGCAAATTCCCCGTCTTCTGGGCCCTGGGCTCAACAAGGCAGGCAAGTGCTCATTATTGGCTGCATGCTTGAAAATTGAATTTCAATCTTTTCTTTGGAAGAAGCAGTCTCTTTTGTTTGTAGTTCGTACTAATATGGATATCTACATTGCCATTGCAGGAAAGTTCCCTACCCTTGTTACTCACCAAGAGTCCCTTGAGTCTAAAGTAAATGAGACGAAGGCAATGGTTAAGTTTCAGTTGAAGAAGGTTCTTTGCATGGGTGTGGCCGTGGGCAATGTTGCCATGGAGGAGAAGCAAGTTTTTCAGAACGTTCAAATGAGTGTCAATTTCCTCGTTTCCTTGTTGAAAAAGAACTGGCAAAACGTGAGATGCTTGTACCTGAAGAGTACTATGGGGAAGGCATATCGAGTCTTCTGA

Protein sequence

MVPPNRSDSGDRLSTGINSTPAESPVDGSPGDSGGGAEKFKGCCGFRERLKRHREEVAGKVTVPEKLGKEELLKDWIDYSAFDRILAAGRIASARASLVAEGRRLLLREDKAPKMSKLQSEALREAISSIFGDSSEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKCSLLAACLKIEFQSFLWKKQSLLFVVRTNMDIYIAIAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKAYRVF

Homology

[Close]

BLAST of Cp4.1LG16g08160 vs. ExPASy Swiss-Prot
Match: B8B9K6 (60S ribosomal protein L10a OS=Oryza sativa subsp. indica OX=39946 GN=RPL10A PE=3 SV=1)

HSP 1 Score: 364.0 bits (933), Expect = 2.0e-99
Identity = 192/255 (75.29%), Postives = 204/255 (80.00%), Query Frame = 0


Query: 115 MSKLQSEALREAISSIFGDSSEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 174
           MSKLQSE L+EAIS + G+S EK R FTET+ELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSEVLKEAISQVVGESKEKGRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 175 KMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIP 234
           KMK+CMLGDA HVEEAEKIGLDYMDVE LKK+NKNKKLVKKLAKKYHAFLASEA+IKQIP
Sbjct: 61  KMKVCMLGDAQHVEEAEKIGLDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAIIKQIP 120

Query: 235 RLLGPGLNKAGKCSLLAACLKIEFQSFLWKKQSLLFVVRTNMDIYIAIAGKFPTLVTHQE 294
           RLLGPGLNK                                       AGKFPTLVTHQE
Sbjct: 121 RLLGPGLNK---------------------------------------AGKFPTLVTHQE 180

Query: 295 SLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQNVQMSVNFLVSLLKKNWQNVR 354
           SLESKVNETKA VKFQLKKVLCMGVAVGN++MEEKQ+ QN+QMSVNFLVSLLKKNWQNVR
Sbjct: 181 SLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIQQNIQMSVNFLVSLLKKNWQNVR 216

Query: 355 CLYLKSTMGKAYRVF 370
           CLY+KSTMGK  RVF
Sbjct: 241 CLYIKSTMGKPIRVF 216

[Close]

BLAST of Cp4.1LG16g08160 vs. ExPASy Swiss-Prot
Match: B7F845 (60S ribosomal protein L10a OS=Oryza sativa subsp. japonica OX=39947 GN=RPL10A PE=1 SV=1)

HSP 1 Score: 364.0 bits (933), Expect = 2.0e-99
Identity = 192/255 (75.29%), Postives = 204/255 (80.00%), Query Frame = 0


Query: 115 MSKLQSEALREAISSIFGDSSEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 174
           MSKLQSE L+EAIS + G+S EK R FTET+ELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSEVLKEAISQVVGESKEKGRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 175 KMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIP 234
           KMK+CMLGDA HVEEAEKIGLDYMDVE LKK+NKNKKLVKKLAKKYHAFLASEA+IKQIP
Sbjct: 61  KMKVCMLGDAQHVEEAEKIGLDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAIIKQIP 120

Query: 235 RLLGPGLNKAGKCSLLAACLKIEFQSFLWKKQSLLFVVRTNMDIYIAIAGKFPTLVTHQE 294
           RLLGPGLNK                                       AGKFPTLVTHQE
Sbjct: 121 RLLGPGLNK---------------------------------------AGKFPTLVTHQE 180

Query: 295 SLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQNVQMSVNFLVSLLKKNWQNVR 354
           SLESKVNETKA VKFQLKKVLCMGVAVGN++MEEKQ+ QN+QMSVNFLVSLLKKNWQNVR
Sbjct: 181 SLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIQQNIQMSVNFLVSLLKKNWQNVR 216

Query: 355 CLYLKSTMGKAYRVF 370
           CLY+KSTMGK  RVF
Sbjct: 241 CLYIKSTMGKPIRVF 216

[Close]

BLAST of Cp4.1LG16g08160 vs. ExPASy Swiss-Prot
Match: Q8VZB9 (60S ribosomal protein L10a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL10AA PE=1 SV=1)

HSP 1 Score: 359.4 bits (921), Expect = 4.9e-98
Identity = 193/255 (75.69%), Postives = 204/255 (80.00%), Query Frame = 0


Query: 115 MSKLQSEALREAISSIFGDSSEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 174
           MSKLQSEA+REAI++I G S  KKRNF ETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSEAVREAITTITGKSEAKKRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 175 KMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIP 234
           KMKICMLGDA HVEEAEK+GL+ MDVE LKKLNKNKKLVKKLAKKYHAFLASE+VIKQIP
Sbjct: 61  KMKICMLGDAQHVEEAEKMGLENMDVESLKKLNKNKKLVKKLAKKYHAFLASESVIKQIP 120

Query: 235 RLLGPGLNKAGKCSLLAACLKIEFQSFLWKKQSLLFVVRTNMDIYIAIAGKFPTLVTHQE 294
           RLLGPGLNK                                       AGKFPTLV+HQE
Sbjct: 121 RLLGPGLNK---------------------------------------AGKFPTLVSHQE 180

Query: 295 SLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQNVQMSVNFLVSLLKKNWQNVR 354
           SLESKVNETKA VKFQLKKVLCMGVAVGN++MEEKQ+FQNVQMSVNFLVSLLKKNWQNVR
Sbjct: 181 SLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVR 216

Query: 355 CLYLKSTMGKAYRVF 370
           CLYLKSTMG   R+F
Sbjct: 241 CLYLKSTMGPPQRIF 216

[Close]

BLAST of Cp4.1LG16g08160 vs. ExPASy Swiss-Prot
Match: P59230 (60S ribosomal protein L10a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL10AB PE=1 SV=1)

HSP 1 Score: 356.3 bits (913), Expect = 4.2e-97
Identity = 191/255 (74.90%), Postives = 203/255 (79.61%), Query Frame = 0


Query: 115 MSKLQSEALREAISSIFGDSSEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 174
           MSKLQSEA+REAI++I G S EKKRNF ET+ELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSEAVREAITTIKGKSEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 175 KMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIP 234
           KMKICMLGDA HVEEAEK+GL  MDVE LKKLNKNKKLVKKLAK YHAFLASE+VIKQIP
Sbjct: 61  KMKICMLGDAQHVEEAEKMGLSNMDVEALKKLNKNKKLVKKLAKSYHAFLASESVIKQIP 120

Query: 235 RLLGPGLNKAGKCSLLAACLKIEFQSFLWKKQSLLFVVRTNMDIYIAIAGKFPTLVTHQE 294
           RLLGPGLNK                                       AGKFPTLV+HQE
Sbjct: 121 RLLGPGLNK---------------------------------------AGKFPTLVSHQE 180

Query: 295 SLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQNVQMSVNFLVSLLKKNWQNVR 354
           SLE+KVNETKA VKFQLKKVLCMGVAVGN++MEEKQ+FQNVQMSVNFLVSLLKKNWQNVR
Sbjct: 181 SLEAKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQLFQNVQMSVNFLVSLLKKNWQNVR 216

Query: 355 CLYLKSTMGKAYRVF 370
           CLYLKSTMG   R+F
Sbjct: 241 CLYLKSTMGPPQRIF 216

[Close]

BLAST of Cp4.1LG16g08160 vs. ExPASy Swiss-Prot
Match: P59231 (60S ribosomal protein L10a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL10AC PE=1 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 2.1e-96
Identity = 194/256 (75.78%), Postives = 203/256 (79.30%), Query Frame = 0


Query: 115 MSKLQSEALREAISSIFGDSSE-KKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPR 174
           MSKLQSEA+REAISSI     E K RNFTETIELQIGLKNYDPQKDKRFSGSVKLPH+PR
Sbjct: 1   MSKLQSEAVREAISSIITHCKETKPRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHVPR 60

Query: 175 PKMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQI 234
           PKMKICMLGDA HVEEAEKIGL+ MDVE LKKLNKNKKLVKKLAKK+HAFLASE+VIKQI
Sbjct: 61  PKMKICMLGDAQHVEEAEKIGLESMDVEALKKLNKNKKLVKKLAKKFHAFLASESVIKQI 120

Query: 235 PRLLGPGLNKAGKCSLLAACLKIEFQSFLWKKQSLLFVVRTNMDIYIAIAGKFPTLVTHQ 294
           PRLLGPGLNK                                       AGKFPTLV+HQ
Sbjct: 121 PRLLGPGLNK---------------------------------------AGKFPTLVSHQ 180

Query: 295 ESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQNVQMSVNFLVSLLKKNWQNV 354
           ESLESKVNETKA VKFQLKKVLCMGVAVGN++MEEKQ+FQNVQMSVNFLVSLLKKNWQNV
Sbjct: 181 ESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNV 217

Query: 355 RCLYLKSTMGKAYRVF 370
           RCLYLKSTMG   RVF
Sbjct: 241 RCLYLKSTMGPPNRVF 217

[Close]

BLAST of Cp4.1LG16g08160 vs. NCBI nr
Match: KAG6570486.1 (Protein HIRA, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 604 bits (1558), Expect = 4.20e-202
Identity = 323/367 (88.01%), Postives = 324/367 (88.28%), Query Frame = 0


Query: 1   MVPPNRSDSGDRLSTGINSTPAESPVDGSPGDSGGGAEKFKGCCGFRERLKRHREEVAGK 60
           MVPPNRSDSGDRLSTGINSTPA +PVDGSPGDS GGAEK KGCCGFRERLKRHREEVAGK
Sbjct: 1   MVPPNRSDSGDRLSTGINSTPAAAPVDGSPGDSSGGAEKLKGCCGFRERLKRHREEVAGK 60

Query: 61  VTVPEKLGKEELLKDWIDYSAFDRILAAGRIASARASLVAEGRRLLLREDKAPKMSKLQS 120
           VTVPEK GKEELLKDWIDYSAFDRILAAGRIASARASLVAEGRRLLLREDKAPKMSKLQS
Sbjct: 61  VTVPEKWGKEELLKDWIDYSAFDRILAAGRIASARASLVAEGRRLLLREDKAPKMSKLQS 120

Query: 121 EALREAISSIFGDSSEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICM 180
           EALREAISSIFGDSSEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICM
Sbjct: 121 EALREAISSIFGDSSEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICM 180

Query: 181 LGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPG 240
           LGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPG
Sbjct: 181 LGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPG 240

Query: 241 LNKAGKCSLLAACLKIEFQSFLWKKQSLLFVVRTNMDIYIAIAGKFPTLVTHQESLESKV 300
           LNKA                                       GKFPTLVTHQESLESKV
Sbjct: 241 LNKA---------------------------------------GKFPTLVTHQESLESKV 300

Query: 301 NETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQNVQMSVNFLVSLLKKNWQNVRCLYLKS 360
           NETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQNVQMSVNFLVSLLKKNWQNVRCLYLKS
Sbjct: 301 NETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQNVQMSVNFLVSLLKKNWQNVRCLYLKS 328

Query: 361 TMGKAYR 367
           TMGKAYR
Sbjct: 361 TMGKAYR 328

[Close]

BLAST of Cp4.1LG16g08160 vs. NCBI nr
Match: KAG7010351.1 (60S ribosomal protein L10a, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 538 bits (1386), Expect = 6.18e-190
Identity = 297/375 (79.20%), Postives = 307/375 (81.87%), Query Frame = 0


Query: 1   MVPPNRSDSGDRLSTGINSTPAESPVDGSPGDSGGGAEKFKGCCGFRERLKRHREEVAGK 60
           MVPPNRSDSGDRLSTGINSTPA +PVDGSPGDS GGAEKFKGCCGFRERLKRHREEVAGK
Sbjct: 1   MVPPNRSDSGDRLSTGINSTPAAAPVDGSPGDSSGGAEKFKGCCGFRERLKRHREEVAGK 60

Query: 61  VTVPEKLGKEELLKDWIDYSAFDRILAAGRIASARASLVAEGRRLLLREDKAPKMSK--- 120
           VTVPEK GKEELLKDWIDYSAFDRILAAGRIASARASLVAEGRR+  R+  A    +   
Sbjct: 61  VTVPEKWGKEELLKDWIDYSAFDRILAAGRIASARASLVAEGRRVESRQFVAAAQGRQGS 120

Query: 121 ---LQSEALREAISSIFGDSSEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 180
              LQSEALREAISSIFGDSSEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 121 ENELQSEALREAISSIFGDSSEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 180

Query: 181 KMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIP 240
           KMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKL        H+      ++ Q+ 
Sbjct: 181 KMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLASVFMTTSHSEFTLY-LVTQVW 240

Query: 241 RLLGPGLNKAGKCSLLAACLKIEFQSFLWKKQSLLFVVRTNMDIYIAIAGKFPTLVTHQE 300
           +L                   + F             VRTNMDI I IAGKFPTLVTHQE
Sbjct: 241 KLF------------------LAFSDL----------VRTNMDICIDIAGKFPTLVTHQE 300

Query: 301 SLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQNVQMSVNFLVSLLKKNWQNVR 360
           SLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQNVQMSVNFLVSLLKKNWQNVR
Sbjct: 301 SLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQNVQMSVNFLVSLLKKNWQNVR 346

Query: 361 CLYLKSTMGKAYRVF 369
           CLYLKSTMGKAYRVF
Sbjct: 361 CLYLKSTMGKAYRVF 346

[Close]

BLAST of Cp4.1LG16g08160 vs. NCBI nr
Match: KAG7035940.1 (60S ribosomal protein L10a, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 469 bits (1207), Expect = 4.17e-162
Identity = 271/400 (67.75%), Postives = 277/400 (69.25%), Query Frame = 0


Query: 44  CGFRERLKRHREEVAGKVTVPEKLGKEELLKDWIDYSAFDRILAAGRIASARASLVAEGR 103
           CG RERLKRH EEVAGKV VPEK GKEELLKDWIDYS FDRIL A RIASARASLVAEGR
Sbjct: 23  CGVRERLKRHCEEVAGKVMVPEKWGKEELLKDWIDYSTFDRILTADRIASARASLVAEGR 82

Query: 104 RLLLR---------EDKAPKM--------------------------------------- 163
           R   R         E  +P++                                       
Sbjct: 83  RSSPRSSSRSPLRVESLSPRLLFGSHLFGRPLYIYCQLPSKNPSLASSHQNTILISASAA 142

Query: 164 --------------------------SKLQSEALREAISSIFGDSSEKKRNFTETIELQI 223
                                     SKLQSEALREAISSIFGDS+EKKRNFTETIELQI
Sbjct: 143 VYVKYAVAINLVRVLFSWKIWKYGVASKLQSEALREAISSIFGDSTEKKRNFTETIELQI 202

Query: 224 GLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKN 283
           GLKNYDPQKDKRFSGSVKLPHIPRPKMK+CMLGDALHVEEAEKIG+DYMDVEGLKKLNKN
Sbjct: 203 GLKNYDPQKDKRFSGSVKLPHIPRPKMKLCMLGDALHVEEAEKIGMDYMDVEGLKKLNKN 262

Query: 284 KKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKCSLLAACLKIEFQSFLWKKQSLL 343
           KKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKC                      
Sbjct: 263 KKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKC---------------------- 322

Query: 344 FVVRTNMDIYIAIAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEK 369
                          KFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEK
Sbjct: 323 ---------------KFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEK 382

[Close]

BLAST of Cp4.1LG16g08160 vs. NCBI nr
Match: KAF2321621.1 (hypothetical protein GH714_000675 [Hevea brasiliensis])

HSP 1 Score: 426 bits (1095), Expect = 3.00e-145
Identity = 234/326 (71.78%), Postives = 253/326 (77.61%), Query Frame = 0


Query: 45  GFRERLKRHREEVAGKVTVPEKLGKEELLKDWIDYSAFDRILAAGRIASARASLVAEGRR 104
           G RERLKRHREEVAGKV +P+   +E  L DWIDYS+FD++LAA  IASAR +L+A+GRR
Sbjct: 89  GGRERLKRHREEVAGKVMIPDAWNQENFLMDWIDYSSFDKLLAANGIASAREALMAQGRR 148

Query: 105 LLLREDKAP-KMSKLQSEALREAISSIFGDSSEKKRNFTETIELQIGLKNYDPQKDKRFS 164
                 +   + SKLQSEALREAIS+I   S EKKRNFTETIELQIGLKNYDPQKDKRFS
Sbjct: 149 GRASSQRLRIESSKLQSEALREAISTIMTASKEKKRNFTETIELQIGLKNYDPQKDKRFS 208

Query: 165 GSVKLPHIPRPKMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAF 224
           GSVKLPHIPRPKMKICMLGDA HVEEAE IGL +MDVE LKKLNKNKKLVKKLAK+YHAF
Sbjct: 209 GSVKLPHIPRPKMKICMLGDAQHVEEAEGIGLQWMDVEALKKLNKNKKLVKKLAKQYHAF 268

Query: 225 LASEAVIKQIPRLLGPGLNKAGKCSLLAACLKIEFQSFLWKKQSLLFVVRTNMDIYIAIA 284
           LASE+VIKQIPRLLGPGLNKA                                       
Sbjct: 269 LASESVIKQIPRLLGPGLNKA--------------------------------------- 328

Query: 285 GKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQNVQMSVNFLV 344
           GKFPTLVTHQESLESKVNETKA VKFQLKKVLCMGVAVGN AMEEKQVFQNVQMSVNFLV
Sbjct: 329 GKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNCAMEEKQVFQNVQMSVNFLV 375

Query: 345 SLLKKNWQNVRCLYLKSTMGKAYRVF 369
           SLLKKNWQNV+CL+LK+TMG   R+F
Sbjct: 389 SLLKKNWQNVKCLHLKTTMGAPQRIF 375

[Close]

BLAST of Cp4.1LG16g08160 vs. NCBI nr
Match: KAA0033405.1 (60S ribosomal protein L10a [Cucumis melo var. makuwa])

HSP 1 Score: 417 bits (1071), Expect = 1.79e-143
Identity = 222/255 (87.06%), Postives = 228/255 (89.41%), Query Frame = 0


Query: 115 MSKLQSEALREAISSIFGDSSEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 174
           MSKLQS+ALREAISSIF DS EKKR FTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSDALREAISSIFADSGEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 175 KMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIP 234
           KMKICMLGDA HVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEA+IKQIP
Sbjct: 61  KMKICMLGDASHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAIIKQIP 120

Query: 235 RLLGPGLNKAGKCSLLAACLKIEFQSFLWKKQSLLFVVRTNMDIYIAIAGKFPTLVTHQE 294
           RLLGPGLNKAG    + A L   F  +   K  L F   TN+DI I I GKFPTLVTHQE
Sbjct: 121 RLLGPGLNKAGNGDEVNASLTFYFMIYFLFKLKLEFC--TNVDIEIMITGKFPTLVTHQE 180

Query: 295 SLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQNVQMSVNFLVSLLKKNWQNVR 354
           SLESKVNETKAMVKFQLKKVLCMGVAVGN+AMEEKQVFQNVQMSVNFLVSLLKKNWQNVR
Sbjct: 181 SLESKVNETKAMVKFQLKKVLCMGVAVGNIAMEEKQVFQNVQMSVNFLVSLLKKNWQNVR 240

Query: 355 CLYLKSTMGKAYRVF 369
           CLYLKSTMGKAYRVF
Sbjct: 241 CLYLKSTMGKAYRVF 253

[Close]

BLAST of Cp4.1LG16g08160 vs. ExPASy TrEMBL
Match: A0A6A6N623 (Ribosomal protein OS=Hevea brasiliensis OX=3981 GN=GH714_000675 PE=3 SV=1)

HSP 1 Score: 426 bits (1095), Expect = 1.45e-145
Identity = 234/326 (71.78%), Postives = 253/326 (77.61%), Query Frame = 0


Query: 45  GFRERLKRHREEVAGKVTVPEKLGKEELLKDWIDYSAFDRILAAGRIASARASLVAEGRR 104
           G RERLKRHREEVAGKV +P+   +E  L DWIDYS+FD++LAA  IASAR +L+A+GRR
Sbjct: 89  GGRERLKRHREEVAGKVMIPDAWNQENFLMDWIDYSSFDKLLAANGIASAREALMAQGRR 148

Query: 105 LLLREDKAP-KMSKLQSEALREAISSIFGDSSEKKRNFTETIELQIGLKNYDPQKDKRFS 164
                 +   + SKLQSEALREAIS+I   S EKKRNFTETIELQIGLKNYDPQKDKRFS
Sbjct: 149 GRASSQRLRIESSKLQSEALREAISTIMTASKEKKRNFTETIELQIGLKNYDPQKDKRFS 208

Query: 165 GSVKLPHIPRPKMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAF 224
           GSVKLPHIPRPKMKICMLGDA HVEEAE IGL +MDVE LKKLNKNKKLVKKLAK+YHAF
Sbjct: 209 GSVKLPHIPRPKMKICMLGDAQHVEEAEGIGLQWMDVEALKKLNKNKKLVKKLAKQYHAF 268

Query: 225 LASEAVIKQIPRLLGPGLNKAGKCSLLAACLKIEFQSFLWKKQSLLFVVRTNMDIYIAIA 284
           LASE+VIKQIPRLLGPGLNKA                                       
Sbjct: 269 LASESVIKQIPRLLGPGLNKA--------------------------------------- 328

Query: 285 GKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQNVQMSVNFLV 344
           GKFPTLVTHQESLESKVNETKA VKFQLKKVLCMGVAVGN AMEEKQVFQNVQMSVNFLV
Sbjct: 329 GKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNCAMEEKQVFQNVQMSVNFLV 375

Query: 345 SLLKKNWQNVRCLYLKSTMGKAYRVF 369
           SLLKKNWQNV+CL+LK+TMG   R+F
Sbjct: 389 SLLKKNWQNVKCLHLKTTMGAPQRIF 375

[Close]

BLAST of Cp4.1LG16g08160 vs. ExPASy TrEMBL
Match: A0A5A7SW61 (60S ribosomal protein L10a OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold111G00570 PE=3 SV=1)

HSP 1 Score: 417 bits (1071), Expect = 8.66e-144
Identity = 222/255 (87.06%), Postives = 228/255 (89.41%), Query Frame = 0


Query: 115 MSKLQSEALREAISSIFGDSSEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 174
           MSKLQS+ALREAISSIF DS EKKR FTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSDALREAISSIFADSGEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 175 KMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIP 234
           KMKICMLGDA HVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEA+IKQIP
Sbjct: 61  KMKICMLGDASHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAIIKQIP 120

Query: 235 RLLGPGLNKAGKCSLLAACLKIEFQSFLWKKQSLLFVVRTNMDIYIAIAGKFPTLVTHQE 294
           RLLGPGLNKAG    + A L   F  +   K  L F   TN+DI I I GKFPTLVTHQE
Sbjct: 121 RLLGPGLNKAGNGDEVNASLTFYFMIYFLFKLKLEFC--TNVDIEIMITGKFPTLVTHQE 180

Query: 295 SLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQNVQMSVNFLVSLLKKNWQNVR 354
           SLESKVNETKAMVKFQLKKVLCMGVAVGN+AMEEKQVFQNVQMSVNFLVSLLKKNWQNVR
Sbjct: 181 SLESKVNETKAMVKFQLKKVLCMGVAVGNIAMEEKQVFQNVQMSVNFLVSLLKKNWQNVR 240

Query: 355 CLYLKSTMGKAYRVF 369
           CLYLKSTMGKAYRVF
Sbjct: 241 CLYLKSTMGKAYRVF 253

[Close]

BLAST of Cp4.1LG16g08160 vs. ExPASy TrEMBL
Match: F6HHG2 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0080g00400 PE=4 SV=1)

HSP 1 Score: 418 bits (1075), Expect = 2.08e-142
Identity = 239/363 (65.84%), Postives = 261/363 (71.90%), Query Frame = 0


Query: 47  RERLKRHREEVAGKVTVPEKLGKEELLKDWIDYSAFDRILAAGRIASARASLVAEGR--- 106
           R+RL+RH  EV GKV +P+K GKE+LLK+WIDYS+FD +LA   I  AR +LVA GR   
Sbjct: 58  RQRLRRHWSEVGGKVLIPDKWGKEDLLKEWIDYSSFDALLAPNGIGVAREALVAAGRGAS 117

Query: 107 --------RLLLR-----EDKAPKM------------------------SKLQSEALREA 166
                   RL  R       K P +                        +KLQS+ALREA
Sbjct: 118 TQGLRISSRLAARVFFISSGKKPVVDPLEGRGFKHERSVHPTWINEDAGAKLQSDALREA 177

Query: 167 ISSIFGDSSEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDALH 226
           I++I  +S EKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMK+CMLGDA H
Sbjct: 178 ITNIVNESKEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQH 237

Query: 227 VEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGK 286
           VEEAEKIGL+YMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGK
Sbjct: 238 VEEAEKIGLEYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGK 297

Query: 287 CSLLAACLKIEFQSFLWKKQSLLFVVRTNMDIYIAIAGKFPTLVTHQESLESKVNETKAM 346
                   KI                             FPTLVTHQESLESKVNETKAM
Sbjct: 298 --------KI-----------------------------FPTLVTHQESLESKVNETKAM 357

Query: 347 VKFQLKKVLCMGVAVGNVAMEEKQVFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKAY 369
           VKFQLKKVLCMGVAVGN +MEEKQ+FQNVQ+SVNFLVSLLKKNWQNVRCLYLKSTMG++ 
Sbjct: 358 VKFQLKKVLCMGVAVGNCSMEEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKSTMGRSN 383

[Close]

BLAST of Cp4.1LG16g08160 vs. ExPASy TrEMBL
Match: A0A5J5RB30 (Uncharacterized protein (Fragment) OS=Gossypium barbadense OX=3634 GN=ES319_D05G083700v1 PE=4 SV=1)

HSP 1 Score: 410 bits (1054), Expect = 1.97e-140
Identity = 231/329 (70.21%), Postives = 248/329 (75.38%), Query Frame = 0


Query: 47  RERLKRHREEVAGKVTVPEKLGKEELLKDWIDYSAFDRILAAGRIASARASLVAEGRRL- 106
           RERLKRHREEVAG+V VP+K GKEELLKDW+DYS+FD +LA   +ASAR +L+ EGRR  
Sbjct: 26  RERLKRHREEVAGRVLVPDKWGKEELLKDWMDYSSFDSLLAPTGLASARKALMTEGRRSS 85

Query: 107 ---LLREDKAPKM--SKLQSEALREAISSIFGDSSEKKRNFTETIELQIGLKNYDPQKDK 166
              L+R      +  SKLQS+ALREAIS+I   S EK+R FTETIELQIGLKNYDPQKDK
Sbjct: 86  SQRLMRIQNFGILIYSKLQSDALREAISTIVAQSKEKQRKFTETIELQIGLKNYDPQKDK 145

Query: 167 RFSGSVKLPHIPRPKMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKY 226
           RFSGSVKLPHIPRPKMKICMLGDA HVEE               KLNKNKKLVKKLAKKY
Sbjct: 146 RFSGSVKLPHIPRPKMKICMLGDAQHVEE---------------KLNKNKKLVKKLAKKY 205

Query: 227 HAFLASEAVIKQIPRLLGPGLNKAGKCSLLAACLKIEFQSFLWKKQSLLFVVRTNMDIYI 286
           HAFLASE+VIKQIPRLLGPGLNKAGKC                                 
Sbjct: 206 HAFLASESVIKQIPRLLGPGLNKAGKCC-------------------------------- 265

Query: 287 AIAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQNVQMSVN 346
               KFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQ+FQNVQMSVN
Sbjct: 266 ----KFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQIFQNVQMSVN 303

Query: 347 FLVSLLKKNWQNVRCLYLKSTMGKAYRVF 369
           FLVSLLKKNWQNVRCLYLKSTMG + R+F
Sbjct: 326 FLVSLLKKNWQNVRCLYLKSTMGPSNRIF 303

[Close]

BLAST of Cp4.1LG16g08160 vs. ExPASy TrEMBL
Match: A0A6J1JCI3 (Ribosomal protein OS=Cucurbita maxima OX=3661 GN=LOC111483802 PE=3 SV=1)

HSP 1 Score: 399 bits (1025), Expect = 2.27e-137
Identity = 216/255 (84.71%), Postives = 216/255 (84.71%), Query Frame = 0


Query: 115 MSKLQSEALREAISSIFGDSSEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 174
           MSKLQSEALREAISSIFGDSSEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSEALREAISSIFGDSSEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 175 KMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIP 234
           KMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIP
Sbjct: 61  KMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIP 120

Query: 235 RLLGPGLNKAGKCSLLAACLKIEFQSFLWKKQSLLFVVRTNMDIYIAIAGKFPTLVTHQE 294
           RLLGPGLNKA                                       GKFPTLVTHQE
Sbjct: 121 RLLGPGLNKA---------------------------------------GKFPTLVTHQE 180

Query: 295 SLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQNVQMSVNFLVSLLKKNWQNVR 354
           SLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQNVQMSVNFLVSLLKKNWQNVR
Sbjct: 181 SLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQNVQMSVNFLVSLLKKNWQNVR 216

Query: 355 CLYLKSTMGKAYRVF 369
           CLYLKSTMGKAYRVF
Sbjct: 241 CLYLKSTMGKAYRVF 216

[Close]

BLAST of Cp4.1LG16g08160 vs. TAIR 10
Match: AT1G08360.1 (Ribosomal protein L1p/L10e family )

HSP 1 Score: 359.4 bits (921), Expect = 3.5e-99
Identity = 193/255 (75.69%), Postives = 204/255 (80.00%), Query Frame = 0


Query: 115 MSKLQSEALREAISSIFGDSSEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 174
           MSKLQSEA+REAI++I G S  KKRNF ETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSEAVREAITTITGKSEAKKRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 175 KMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIP 234
           KMKICMLGDA HVEEAEK+GL+ MDVE LKKLNKNKKLVKKLAKKYHAFLASE+VIKQIP
Sbjct: 61  KMKICMLGDAQHVEEAEKMGLENMDVESLKKLNKNKKLVKKLAKKYHAFLASESVIKQIP 120

Query: 235 RLLGPGLNKAGKCSLLAACLKIEFQSFLWKKQSLLFVVRTNMDIYIAIAGKFPTLVTHQE 294
           RLLGPGLNK                                       AGKFPTLV+HQE
Sbjct: 121 RLLGPGLNK---------------------------------------AGKFPTLVSHQE 180

Query: 295 SLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQNVQMSVNFLVSLLKKNWQNVR 354
           SLESKVNETKA VKFQLKKVLCMGVAVGN++MEEKQ+FQNVQMSVNFLVSLLKKNWQNVR
Sbjct: 181 SLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVR 216

Query: 355 CLYLKSTMGKAYRVF 370
           CLYLKSTMG   R+F
Sbjct: 241 CLYLKSTMGPPQRIF 216

[Close]

BLAST of Cp4.1LG16g08160 vs. TAIR 10
Match: AT2G27530.1 (Ribosomal protein L1p/L10e family )

HSP 1 Score: 356.3 bits (913), Expect = 3.0e-98
Identity = 191/255 (74.90%), Postives = 203/255 (79.61%), Query Frame = 0


Query: 115 MSKLQSEALREAISSIFGDSSEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 174
           MSKLQSEA+REAI++I G S EKKRNF ET+ELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSEAVREAITTIKGKSEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 175 KMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIP 234
           KMKICMLGDA HVEEAEK+GL  MDVE LKKLNKNKKLVKKLAK YHAFLASE+VIKQIP
Sbjct: 61  KMKICMLGDAQHVEEAEKMGLSNMDVEALKKLNKNKKLVKKLAKSYHAFLASESVIKQIP 120

Query: 235 RLLGPGLNKAGKCSLLAACLKIEFQSFLWKKQSLLFVVRTNMDIYIAIAGKFPTLVTHQE 294
           RLLGPGLNK                                       AGKFPTLV+HQE
Sbjct: 121 RLLGPGLNK---------------------------------------AGKFPTLVSHQE 180

Query: 295 SLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQNVQMSVNFLVSLLKKNWQNVR 354
           SLE+KVNETKA VKFQLKKVLCMGVAVGN++MEEKQ+FQNVQMSVNFLVSLLKKNWQNVR
Sbjct: 181 SLEAKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQLFQNVQMSVNFLVSLLKKNWQNVR 216

Query: 355 CLYLKSTMGKAYRVF 370
           CLYLKSTMG   R+F
Sbjct: 241 CLYLKSTMGPPQRIF 216

[Close]

BLAST of Cp4.1LG16g08160 vs. TAIR 10
Match: AT2G27530.2 (Ribosomal protein L1p/L10e family )

HSP 1 Score: 356.3 bits (913), Expect = 3.0e-98
Identity = 191/255 (74.90%), Postives = 203/255 (79.61%), Query Frame = 0


Query: 115 MSKLQSEALREAISSIFGDSSEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 174
           MSKLQSEA+REAI++I G S EKKRNF ET+ELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1   MSKLQSEAVREAITTIKGKSEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 175 KMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIP 234
           KMKICMLGDA HVEEAEK+GL  MDVE LKKLNKNKKLVKKLAK YHAFLASE+VIKQIP
Sbjct: 61  KMKICMLGDAQHVEEAEKMGLSNMDVEALKKLNKNKKLVKKLAKSYHAFLASESVIKQIP 120

Query: 235 RLLGPGLNKAGKCSLLAACLKIEFQSFLWKKQSLLFVVRTNMDIYIAIAGKFPTLVTHQE 294
           RLLGPGLNK                                       AGKFPTLV+HQE
Sbjct: 121 RLLGPGLNK---------------------------------------AGKFPTLVSHQE 180

Query: 295 SLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQNVQMSVNFLVSLLKKNWQNVR 354
           SLE+KVNETKA VKFQLKKVLCMGVAVGN++MEEKQ+FQNVQMSVNFLVSLLKKNWQNVR
Sbjct: 181 SLEAKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQLFQNVQMSVNFLVSLLKKNWQNVR 216

Query: 355 CLYLKSTMGKAYRVF 370
           CLYLKSTMG   R+F
Sbjct: 241 CLYLKSTMGPPQRIF 216

[Close]

BLAST of Cp4.1LG16g08160 vs. TAIR 10
Match: AT5G22440.1 (Ribosomal protein L1p/L10e family )

HSP 1 Score: 354.0 bits (907), Expect = 1.5e-97
Identity = 194/256 (75.78%), Postives = 203/256 (79.30%), Query Frame = 0


Query: 115 MSKLQSEALREAISSIFGDSSE-KKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPR 174
           MSKLQSEA+REAISSI     E K RNFTETIELQIGLKNYDPQKDKRFSGSVKLPH+PR
Sbjct: 1   MSKLQSEAVREAISSIITHCKETKPRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHVPR 60

Query: 175 PKMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQI 234
           PKMKICMLGDA HVEEAEKIGL+ MDVE LKKLNKNKKLVKKLAKK+HAFLASE+VIKQI
Sbjct: 61  PKMKICMLGDAQHVEEAEKIGLESMDVEALKKLNKNKKLVKKLAKKFHAFLASESVIKQI 120

Query: 235 PRLLGPGLNKAGKCSLLAACLKIEFQSFLWKKQSLLFVVRTNMDIYIAIAGKFPTLVTHQ 294
           PRLLGPGLNK                                       AGKFPTLV+HQ
Sbjct: 121 PRLLGPGLNK---------------------------------------AGKFPTLVSHQ 180

Query: 295 ESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQNVQMSVNFLVSLLKKNWQNV 354
           ESLESKVNETKA VKFQLKKVLCMGVAVGN++MEEKQ+FQNVQMSVNFLVSLLKKNWQNV
Sbjct: 181 ESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNV 217

Query: 355 RCLYLKSTMGKAYRVF 370
           RCLYLKSTMG   RVF
Sbjct: 241 RCLYLKSTMGPPNRVF 217

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BLAST of Cp4.1LG16g08160 vs. TAIR 10
Match: AT5G22440.2 (Ribosomal protein L1p/L10e family )

HSP 1 Score: 354.0 bits (907), Expect = 1.5e-97
Identity = 194/256 (75.78%), Postives = 203/256 (79.30%), Query Frame = 0


Query: 115 MSKLQSEALREAISSIFGDSSE-KKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPR 174
           MSKLQSEA+REAISSI     E K RNFTETIELQIGLKNYDPQKDKRFSGSVKLPH+PR
Sbjct: 1   MSKLQSEAVREAISSIITHCKETKPRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHVPR 60

Query: 175 PKMKICMLGDALHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQI 234
           PKMKICMLGDA HVEEAEKIGL+ MDVE LKKLNKNKKLVKKLAKK+HAFLASE+VIKQI
Sbjct: 61  PKMKICMLGDAQHVEEAEKIGLESMDVEALKKLNKNKKLVKKLAKKFHAFLASESVIKQI 120

Query: 235 PRLLGPGLNKAGKCSLLAACLKIEFQSFLWKKQSLLFVVRTNMDIYIAIAGKFPTLVTHQ 294
           PRLLGPGLNK                                       AGKFPTLV+HQ
Sbjct: 121 PRLLGPGLNK---------------------------------------AGKFPTLVSHQ 180

Query: 295 ESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQNVQMSVNFLVSLLKKNWQNV 354
           ESLESKVNETKA VKFQLKKVLCMGVAVGN++MEEKQ+FQNVQMSVNFLVSLLKKNWQNV
Sbjct: 181 ESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNV 217

Query: 355 RCLYLKSTMGKAYRVF 370
           RCLYLKSTMG   RVF
Sbjct: 241 RCLYLKSTMGPPNRVF 217

The following BLAST results are available for this feature:

BLAST of Cp4.1LG16g08160 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B8B9K6	2.0e-99	75.29	60S ribosomal protein L10a OS=Oryza sativa subsp. indica OX=39946 GN=RPL10A PE=3...	[more]
B7F845	2.0e-99	75.29	60S ribosomal protein L10a OS=Oryza sativa subsp. japonica OX=39947 GN=RPL10A PE...	[more]
Q8VZB9	4.9e-98	75.69	60S ribosomal protein L10a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL10AA PE=1 SV=...	[more]
P59230	4.2e-97	74.90	60S ribosomal protein L10a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL10AB PE=1 SV=...	[more]
P59231	2.1e-96	75.78	60S ribosomal protein L10a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL10AC PE=1 SV=...	[more]

BLAST of Cp4.1LG16g08160 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6570486.1	4.20e-202	88.01	Protein HIRA, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7010351.1	6.18e-190	79.20	60S ribosomal protein L10a, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG7035940.1	4.17e-162	67.75	60S ribosomal protein L10a, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAF2321621.1	3.00e-145	71.78	hypothetical protein GH714_000675 [Hevea brasiliensis]	[more]
KAA0033405.1	1.79e-143	87.06	60S ribosomal protein L10a [Cucumis melo var. makuwa]	[more]

BLAST of Cp4.1LG16g08160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6A6N623	1.45e-145	71.78	Ribosomal protein OS=Hevea brasiliensis OX=3981 GN=GH714_000675 PE=3 SV=1	[more]
A0A5A7SW61	8.66e-144	87.06	60S ribosomal protein L10a OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff...	[more]
F6HHG2	2.08e-142	65.84	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0080g00400 PE=4 SV=...	[more]
A0A5J5RB30	1.97e-140	70.21	Uncharacterized protein (Fragment) OS=Gossypium barbadense OX=3634 GN=ES319_D05G...	[more]
A0A6J1JCI3	2.27e-137	84.71	Ribosomal protein OS=Cucurbita maxima OX=3661 GN=LOC111483802 PE=3 SV=1	[more]

BLAST of Cp4.1LG16g08160 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08360.1	3.5e-99	75.69	Ribosomal protein L1p/L10e family	[more]
AT2G27530.1	3.0e-98	74.90	Ribosomal protein L1p/L10e family	[more]
AT2G27530.2	3.0e-98	74.90	Ribosomal protein L1p/L10e family	[more]
AT5G22440.1	1.5e-97	75.78	Ribosomal protein L1p/L10e family	[more]
AT5G22440.2	1.5e-97	75.78	Ribosomal protein L1p/L10e family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR028364	Ribosomal protein L1/ribosomal biogenesis protein	PFAM	PF00687	Ribosomal_L1	coord: 137..363 e-value: 3.9E-36 score: 124.7
IPR028364	Ribosomal protein L1/ribosomal biogenesis protein	CDD	cd00403	Ribosomal_L1	coord: 123..368 e-value: 1.63661E-54 score: 176.606
None	No IPR available	GENE3D	3.30.190.20		coord: 289..367 e-value: 1.6E-20 score: 75.3 coord: 115..233 e-value: 2.7E-35 score: 123.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..39
None	No IPR available	PANTHER	PTHR23105	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	coord: 278..367
None	No IPR available	PANTHER	PTHR23105:SF164	60S RIBOSOMAL PROTEIN L10A-3	coord: 278..367 coord: 116..251
None	No IPR available	PANTHER	PTHR23105	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	coord: 116..251
IPR023674	Ribosomal protein L1-like	SUPERFAMILY	56808	Ribosomal protein L1	coord: 136..247
IPR023674	Ribosomal protein L1-like	SUPERFAMILY	56808	Ribosomal protein L1	coord: 281..369

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG16g08160.1	Cp4.1LG16g08160.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0015934	large ribosomal subunit
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome