Cucsat.G16046.T1 (mRNA) Cucumber (B10) v3

Overview
NameCucsat.G16046.T1
TypemRNA
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Descriptionterpene synthase 10-like
Locationctg2178: 1018799 .. 1022358 (+)
RNA-Seq ExpressionCucsat.G16046.T1
SyntenyCucsat.G16046.T1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GCCAACACAAAATCTATACTCACGGTGTTTGGATACCCCCCAATATATTTTAGGTTGCATCTTAGTATCATCCCCAACAAAAGCTTTGAGTTTTAAACAGCATCAACACAAAACTCTTCACTATTCTTCTCTCTCAATGGCTCTTCACCAATTTCCCACTTCTAGTCAGACAAGTCGTTTCATTGAACGAGTCTCTTGTAATTTCAATCCTTCATTTATCCCTCGGATCGTTAAAGTAATCAGCAAAACTACTGCGACAAGAATGTGTAGTCAGACCATTGTACGACGATCAGGAAATTATCAACCTCCTTTTTGGAAACATGAGTTCATTCAATCTTTGAGGAGCGAATTTGGGGTATGGATGATAAAATCTTTAAATTGGTTGATTACTTATTTATTTAATGAATTTAATTTTGAGAATGATTGACAATTATTTGTGTGAATATGTATATCTTATGTCAGGGAGAAATATATGTAGGACGTTTCAATGAGTTAAAAAGAGAAATACGACTCATCATTAACCAAATAATCGATGATCCTCTAAAACAACTTGAGCTCATTGATACGCTACAGCGACTTGGCATCTCATATCATTTTGAGAATGAGATTAAGAATGTGTTGAAAACAACATATGAGAAGAGCTATGAAAACGATTATTGGAAAAACAATAATCTCTACGCTACATCACTTGAATTTAGACTTTTAAGACAACATGGATTCAATCTTTCACAAGGTATTTAGTTCCCTAACCGTAGATCACGGCCAATTAAAATGTTCATTCACTCCTCATGTTTTATGTTGATGTTGAGTTCATTAGAGTACACACGCGAAAATATATAGACACGTGAAAATTTTATATATAGAATGACGATGCATTAGACAAAATACGTTTTTTAATATTTAACAAATATTATTATTATTTTAATGTCAGATGTTTTCAATAATTTCTACTCGAGTGAGACGAAAAGTTTCAACACACAAATGTATCAAGATTTAAATGGAATGTTATTTTTGTACGAAGCCTCATTCTTGAGTATAGAAGGGGAGAATATTTTAGAGACCGCAAAACATTTTACAGTGAAATATTTAGAAAAATACATGAAGTCAAGCAAGGATGAAAAAGAAGTAGCCATTGTTAGACATGCATTGGAGCTTCCCTTACATTGGAGAATGCCAAGATTGGAGACACGATGGTTCATTGATATCTACGAGAGAAAAGTGGATATGAATCCTATTCTTCTTGAATTTGCTAAACTTGATTTCAATAGGGTGCAATCTATCCACCAACAAGATTTAAAATACGCATCAAGGTAACACTATTTATATTGTTGTTCAATACAAAAGATATACATATACGAGTTAATGAACTTAAAGCTTACAAGATTGAAGATATTACTGAAATTATTTATAACAATTCTTTACTGTCCATCTCTTCTTCTATAGATTGTTTATATAACAACTGCGAGAAAAGAATGAAAATATATATCAGTGGAAAAGGGAAATGAAATTTGAATATAAGACCTTAGAATTATGATATTCTATATGATACACATATAAACAGTCAATCCAAAAGTTTAAATTGATGTGTGTTACGTTAAATTTAATTATAGCAATTCTTTTACAAGTTTATGGCATCATTGTATATCAACAGTTGGTGGAGAAGCACCGGATTTGGAGAAAAGTTGAGGTTTGCAAGAGATAGATTGATGGAAAATTTCTTATGGACGGTAGGTTTTGGATATGAACCTAAATTCTCATCTTATCGAAGAATGGCCACAAAAATTAATGCATTCATAACAACAATTGATGATGTTTATGATGTCTATGGCACATTAGATGAACTCCAACTCTTTACCGACGCAATTGAGAGGTAAGTAATCAATAACTCGACTTCGAAAAAATTTAGATGCAACCATCTTTTGTGCACCCTGGCTAAAACCTAATAGAAATATGCCACGTACAACTCTTTTATCGAAAAAAAATCTGTGTAAAGAAGATTAAGTTGATGAAAAGTTGTACCTAATCATTGATTTTGTATCCTATAAGCTTTTAAACATTAGATTATAACAAGATTAGCATTTTAAGATTAACTTTCTATAAAATTTTATACCTCTTCCAATTAAAATAATCAACTTTCTATTTTATTATTTTTATATTTTTAAAATTACTATTTTTATTTTTATTCCTTTGGAAGGAACTTACTTCCATAATCATATCATATAATCATATCATAGATTGATTTAGTGGTAAAAAATAAAGATAATGGTCTCGATAAATAACTTAGCTCTAGAGACTATGAATTCAATCAATGTGATATATATCTAATAACTTATTTCTTACAAGTTTTTTTTACATTCAAACATTGGATGCAATATTTTTTTTAGAAAAAGGAATATTATGAAAATCTATTAATATCTAATTCTATTGAAAATTGTGGTATTAGGTGGGATGTTGATGCATTGGACCAGCTTCCTGACTATATGAAAATATGTTTTTTTGCTCTCCACAATTCTATAAATGAGATGGCCTTTGAAGTATTAAGAGACAAAGGAATTAATGTCATCCAATACCTTAAGAAAGCAGTATGAAGTTAATTTATATGCCAGTTTGTTTTTAATTTGCATTTGATTGACATCATTCCAAATCATTAATATTAATTTATGTAAATTTATATTTTACAGTGGGTAGATTTGTGCAAAAGTTACATGTTGGAGGCAAAATGGTACCACACTAATCATAAACCAACATTGGAAGAATATTTAGATAATGCATGGATTTCAATATCAGGACCAGTTGTATTAATTCATGCATATGTTTTCGTCACATCTCCAACACTTGAAAATATGGAGAGTTTGAAACAATATGTTGATATGGTTCGTTGGTCATCAACAATTTTACGACTTGCTGATGATCTCGGAACGTCATCGGTAAGTGAATGAAGTTTGTATTCATTTTACGTTTTGTTAACTAATTACATAGTTAATTATTATAAGATGGATAATTAATTAACTTCAATTCAGAATGAATTAGCAAGAGGTGATGTTCCAAAATCAATACAATGTTATATGAAAGATACAGGAGGCTCAGAGAGTGATGCTCGTAAACATATAAGGCATTTGATTGATGAGACATGGAAGAAACTGAATAAGGTTCAAGTCGAGAATTCTATCTTTCCTAAAGTGTTCATCGAGAGAGCTAAGAATGTTGCTAGAATGGCTCAATGCATGTATCAATATGGTGATGGACATGGCATAGTACACCAAGAAACAAAAGACCGTGTAATGTCTCTACTTATTCAACAGATTTCCATTCATCCCTATAGTGAAAACTTGCCTAAGGTTATTTAAATGGATCGATAATATTGAAATCATTCAATATAATTTTAGTAGATTTGGAAATGTTAATTTGGGAAAGGAAAAAACAAAGGGACTTTGATTGCATTCTCAATCCCAATAAATTTTGTTGTTAAGTCCATTGTGGGTTTTGTAATAAACCATTGACTCTCATTGGTTGGTTTTATTGTTGAGCAACAAAGTTAAAAGGATCAACTCAAAGTTATT

Coding sequence (CDS)

ATGGCATCATTGTATATCAACAGTTGGTGGAGAAGCACCGGATTTGGAGAAAAGTTGAGGTTTGCAAGAGATAGATTGATGGAAAATTTCTTATGGACGGTAGGTTTTGGATATGAACCTAAATTCTCATCTTATCGAAGAATGGCCACAAAAATTAATGCATTCATAACAACAATTGATGATGTTTATGATGTCTATGGCACATTAGATGAACTCCAACTCTTTACCGACGCAATTGAGAGGTGGGATGTTGATGCATTGGACCAGCTTCCTGACTATATGAAAATATGTTTTTTTGCTCTCCACAATTCTATAAATGAGATGGCCTTTGAAGTATTAAGAGACAAAGGAATTAATGTCATCCAATACCTTAAGAAAGCATGGGTAGATTTGTGCAAAAGTTACATGTTGGAGGCAAAATGGTACCACACTAATCATAAACCAACATTGGAAGAATATTTAGATAATGCATGGATTTCAATATCAGGACCAGTTGTATTAATTCATGCATATGTTTTCGTCACATCTCCAACACTTGAAAATATGGAGAGTTTGAAACAATATGTTGATATGGTTCGTTGGTCATCAACAATTTTACGACTTGCTGATGATCTCGGAACGTCATCGAATGAATTAGCAAGAGGTGATGTTCCAAAATCAATACAATGTTATATGAAAGATACAGGAGGCTCAGAGAGTGATGCTCGTAAACATATAAGGCATTTGATTGATGAGACATGGAAGAAACTGAATAAGGTTCAAGTCGAGAATTCTATCTTTCCTAAAGTGTTCATCGAGAGAGCTAAGAATGTTGCTAGAATGGCTCAATGCATGTATCAATATGGTGATGGACATGGCATAGTACACCAAGAAACAAAAGACCGTGTAATGTCTCTACTTATTCAACAGATTTCCATTCATCCCTATAGTGAAAACTTGCCTAAGGTTATTTAA

Protein sequence

MASLYINSWWRSTGFGEKLRFARDRLMENFLWTVGFGYEPKFSSYRRMATKINAFITTIDDVYDVYGTLDELQLFTDAIERWDVDALDQLPDYMKICFFALHNSINEMAFEVLRDKGINVIQYLKKAWVDLCKSYMLEAKWYHTNHKPTLEEYLDNAWISISGPVVLIHAYVFVTSPTLENMESLKQYVDMVRWSSTILRLADDLGTSSNELARGDVPKSIQCYMKDTGGSESDARKHIRHLIDETWKKLNKVQVENSIFPKVFIERAKNVARMAQCMYQYGDGHGIVHQETKDRVMSLLIQQISIHPYSENLPKVI
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
B9T5361.1e-12266.89Terpene synthase 10 OS=Ricinus communis OX=3988 GN=TPS10 PE=2 SV=1[more]
Q6PWU29.7e-11963.46(-)-alpha-terpineol synthase OS=Vitis vinifera OX=29760 PE=1 SV=1[more]
Q93X231.5e-11661.06Myrcene synthase, chloroplastic OS=Quercus ilex OX=58334 PE=1 SV=1[more]
Q8L5K46.5e-10760.40Gamma-terpinene synthase, chloroplastic OS=Citrus limon OX=2708 PE=1 SV=1[more]
B3TPQ71.5e-10355.41Alpha-terpineol synthase, chloroplastic OS=Magnolia grandiflora OX=3406 PE=1 SV=... [more]
Match NameE-valueIdentityDescription
KGN62192.21.28e-22999.36hypothetical protein Csa_006747 [Cucumis sativus][more]
XP_011649391.21.36e-22899.36terpene synthase 10 isoform X1 [Cucumis sativus][more]
KAA0045518.15.95e-21692.65terpene synthase 10-like [Cucumis melo var. makuwa] >TYK02107.1 terpene synthase... [more]
XP_008461028.13.40e-21292.65PREDICTED: terpene synthase 10-like [Cucumis melo][more]
KAA0045521.16.62e-19281.11terpene synthase 10-like [Cucumis melo var. makuwa] >TYK02110.1 terpene synthase... [more]
Match NameE-valueIdentityDescription
A0A5A7TRP82.88e-21692.65Terpene synthase 10-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A1S3CDB31.65e-21292.65terpene synthase 10-like OS=Cucumis melo OX=3656 GN=LOC103499733 PE=4 SV=1[more]
A0A5D3BSM63.20e-19281.11Terpene synthase 10-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A1S3CDT76.51e-18981.11terpene synthase 10-like OS=Cucumis melo OX=3656 GN=LOC103499735 PE=4 SV=1[more]
A0A6J1EMY13.38e-18880.78terpene synthase 10-like OS=Cucurbita moschata OX=3662 GN=LOC111434992 PE=4 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008949Isoprenoid synthase domain superfamilyGENE3D1.10.600.10Farnesyl Diphosphate Synthasecoord: 3..305
e-value: 1.3E-128
score: 430.9
IPR008949Isoprenoid synthase domain superfamilySUPERFAMILY48576Terpenoid synthasescoord: 6..302
IPR005630Terpene synthase, metal-binding domainPFAMPF03936Terpene_synth_Ccoord: 6..249
e-value: 2.9E-89
score: 299.0
NoneNo IPR availableSFLDSFLDS00005Isoprenoid_Synthase_Type_Icoord: 7..305
e-value: 0.0
score: 355.9
NoneNo IPR availablePANTHERPTHR31225OS04G0344100 PROTEIN-RELATEDcoord: 7..306
NoneNo IPR availablePANTHERPTHR31225:SF114TERPENE SYNTHASE 10-LIKEcoord: 7..306
IPR034741Terpene cyclase-like 1, C-terminal domainSFLDSFLDG01019Terpene_Cyclase_Like_1_C_Termcoord: 7..305
e-value: 0.0
score: 355.9

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cucsat.G16046Cucsat.G16046gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G16046.T1.E1Cucsat.G16046.T1.E1exon
Cucsat.G16046.T1.E2Cucsat.G16046.T1.E2exon
Cucsat.G16046.T1.E3Cucsat.G16046.T1.E3exon
Cucsat.G16046.T1.E4Cucsat.G16046.T1.E4exon
Cucsat.G16046.T1.E5Cucsat.G16046.T1.E5exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cucsat.G16046.T1.C1Cucsat.G16046.T1.C1CDS
Cucsat.G16046.T1.C2Cucsat.G16046.T1.C2CDS
Cucsat.G16046.T1.C3Cucsat.G16046.T1.C3CDS
Cucsat.G16046.T1.C4Cucsat.G16046.T1.C4CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cucsat.G16046.T1Cucsat.G16046.T1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016102 diterpenoid biosynthetic process
biological_process GO:0032784 regulation of DNA-templated transcription, elongation
biological_process GO:0006357 regulation of transcription by RNA polymerase II
biological_process GO:0006368 transcription elongation from RNA polymerase II promoter
cellular_component GO:0032044 DSIF complex
molecular_function GO:0016829 lyase activity
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0010333 terpene synthase activity
molecular_function GO:0003729 mRNA binding