Cp4.1LG02g14430 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG02g14430
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	60S ribosomal protein L28-2-like
Location	Cp4.1LG02: 14045982 .. 14047702 (+)
RNA-Seq Expression	Cp4.1LG02g14430
Synteny	Cp4.1LG02g14430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCAGGCCCATAACCTAAGCCCATTGAGTTTCTGGTTCGTGCTTCGAATTAGGGCTTAATATAAATTTAGGGAACTCCCTCTTCTTCTTCGCGCGCCCCATTTTGCCCATCCGAGTTTCTGAGACAAACCCTAAAGTTAATCAGGTCTCTGCATTTCTCTCAACGATTTCTTTTGAATGCATTATTTAAATCTCGAAACAATAACATTCATATGTATGTTTTACTCTTACTAAACTAACTTCGAAGATATTGTTTCATCGTGTTGCAGGGCGAGAAGAAGATCATGGCGGCGGTTCCAGGACAATTGATTTGGGAGATTGTGAAGAGGAACAACTCGTTTTTGGTCAAGGAGTTTGGGAGGGGAACAGCCGGCGTTCAGTTCAGCAAAGAGTCTAACAACTTATACAATCTGAACTCCTACAAACATTCTGGTAAGTCATCTCAAATTCTCTGATGTATTGATTTTTTTTTTTTTTTTCATGTCAAGAAAAATGCTAGTGGATTAAGTTTTGGGGGTTTTATTGAAATGTCGGAACGATCCGGAGACGAGATCATAGGTATATTATATCGTTGTTATTTTGAGGTTTGTGTTTGACTTTTCTTTTGGAGCAAAGGAATTATGTACAGGAAATTTAAATAGTTAGTGTTATCTGATTGGATTCTGTCTGCTAAGGACCTAAGAAGATGCTTGGTTTATGATATGGAAACTGGATGCTCTTATCAATTGGTGATTATATTCTAGATAAATACGTGTTCGTGCTTCATACATTCTGGATTCGGTGGGAGGGAACGTAAAACTGATGTTTGTGAAATTGTTTTTACTATCATCCCTGTTTCTTCTCTTTAGATTTATTTATTTTAATTATTTTTTGATTGAAGATAATATTGCAGATAGTGAGTTCTGTATATGCATAGAGATTAAATAAGATTCTTGTGTTTTAGGTTTGGCCAACAAGAAAACTGTTACGATTCAACCTGGAGGCAAAGACCAATCCATTTTGTTTGCAACAACTAAGAGCAAGAAACAGAACAAGCCTTCTTCATTGCTTCACAAATCATTAATGAAGAAAGAGTTCCGTAGGATGGCCAAAGCTGTAACAAATCAGGTAATTTTAAAGGTTCAGGCATTCAACGTCTTATTTCGGCTCCCACCCCCCCTTATCGCCGGCAATAAAACTACAATTGTGGCATATACCTTAGGCTAAGTAATATGACTATCTTTCGAGTACTTTTGCTGCGAATTTACTTTGAATGGTTGAAACCCTTCTGTCCCAATGATATGCAGGTGGGAGATAACTACTACAGGCCAGATCTGAAGAGGGATGCTCTTGCAAGATTGAGTGCTGTGAACAGGAGCCTTAAGGTGGCCAAGTCTGGCGTAAAGAAGAGGAACAGGCAAGCGTTGAAATCACGTGGAAGGAAGTGAGAATTGAGCTAGTAGAGAGAAGAGATTGTTGCATTTTTCAATTGTGTTTTCTTTTGGAATGCCAACTTTGTAGTTCGGTTTGGAATCTGAAGGAGTAGTAGTAGTCTGGCAATAGATGTTTTGCTATGTTTTGCGTTACTATAATGGTTATTTCATGTTGAGGTTAACTCTTTGCGGGTAATCTTAAGACTTTGTTTTGGTTAATATGTTATTCTAAATGTAGCTGAAAATTACCAGATATTTTATTATCCTTCACCATGACTACCTAAAATGATAGTACGGCAATACACTCTATT

mRNA sequence

CCAGGCCCATAACCTAAGCCCATTGAGTTTCTGGTTCGTGCTTCGAATTAGGGCTTAATATAAATTTAGGGAACTCCCTCTTCTTCTTCGCGCGCCCCATTTTGCCCATCCGAGTTTCTGAGACAAACCCTAAAGTTAATCAGGGCGAGAAGAAGATCATGGCGGCGGTTCCAGGACAATTGATTTGGGAGATTGTGAAGAGGAACAACTCGTTTTTGGTCAAGGAGTTTGGGAGGGGAACAGCCGGCGTTCAGTTCAGCAAAGAGTCTAACAACTTATACAATCTGAACTCCTACAAACATTCTGGTTTGGCCAACAAGAAAACTGTTACGATTCAACCTGGAGGCAAAGACCAATCCATTTTGTTTGCAACAACTAAGAGCAAGAAACAGAACAAGCCTTCTTCATTGCTTCACAAATCATTAATGAAGAAAGAGTTCCGTAGGATGGCCAAAGCTGTAACAAATCAGGTGGGAGATAACTACTACAGGCCAGATCTGAAGAGGGATGCTCTTGCAAGATTGAGTGCTGTGAACAGGAGCCTTAAGGTGGCCAAGTCTGGCGTAAAGAAGAGGAACAGGCAAGCGTTGAAATCACGTGGAAGGAAGTGAGAATTGAGCTAGTAGAGAGAAGAGATTGTTGCATTTTTCAATTGTGTTTTCTTTTGGAATGCCAACTTTGTAGTTCGGTTTGGAATCTGAAGGAGTAGTAGTAGTCTGGCAATAGATGTTTTGCTATGTTTTGCGTTACTATAATGGTTATTTCATGTTGAGGTTAACTCTTTGCGGGTAATCTTAAGACTTTGTTTTGGTTAATATGTTATTCTAAATGTAGCTGAAAATTACCAGATATTTTATTATCCTTCACCATGACTACCTAAAATGATAGTACGGCAATACACTCTATT

Coding sequence (CDS)

ATGGCGGCGGTTCCAGGACAATTGATTTGGGAGATTGTGAAGAGGAACAACTCGTTTTTGGTCAAGGAGTTTGGGAGGGGAACAGCCGGCGTTCAGTTCAGCAAAGAGTCTAACAACTTATACAATCTGAACTCCTACAAACATTCTGGTTTGGCCAACAAGAAAACTGTTACGATTCAACCTGGAGGCAAAGACCAATCCATTTTGTTTGCAACAACTAAGAGCAAGAAACAGAACAAGCCTTCTTCATTGCTTCACAAATCATTAATGAAGAAAGAGTTCCGTAGGATGGCCAAAGCTGTAACAAATCAGGTGGGAGATAACTACTACAGGCCAGATCTGAAGAGGGATGCTCTTGCAAGATTGAGTGCTGTGAACAGGAGCCTTAAGGTGGCCAAGTCTGGCGTAAAGAAGAGGAACAGGCAAGCGTTGAAATCACGTGGAAGGAAGTGA

Protein sequence

MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQPGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALARLSAVNRSLKVAKSGVKKRNRQALKSRGRK

Homology

[Close]

BLAST of Cp4.1LG02g14430 vs. ExPASy Swiss-Prot
Match: Q9M0E2 (60S ribosomal protein L28-2 OS=Arabidopsis thaliana OX=3702 GN=RPL28C PE=2 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 6.8e-54
Identity = 106/143 (74.13%), Postives = 123/143 (86.01%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60
           MA VPGQLIWEIVKRNN FLVK+FGRG A VQFSKESNNL N+NSYKHSGLANKKTVTIQ
Sbjct: 1   MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALA 120
             GKDQ ++  TTK+K+QNKP   ++KS++KKEF RM+K V NQV DNYYRPDLK+ ALA
Sbjct: 61  AAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQA 144
           RLSA+++ L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGPKRRNRQA 143

[Close]

BLAST of Cp4.1LG02g14430 vs. ExPASy Swiss-Prot
Match: O82204 (60S ribosomal protein L28-1 OS=Arabidopsis thaliana OX=3702 GN=RPL28A PE=1 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 2.2e-52
Identity = 104/143 (72.73%), Postives = 124/143 (86.71%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60
           MA VPGQLIWEIVK NN FLVK+FGRG + VQFSKE+NNL N++SYKHSGLANKKTVTIQ
Sbjct: 1   MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALA 120
              KDQ+++ ATTK+KKQNKP   ++KS++KKEF RM+KAV NQV DNYYRPDLK+ ALA
Sbjct: 61  AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQA 144
           RLSA+++ L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA 143

[Close]

BLAST of Cp4.1LG02g14430 vs. ExPASy Swiss-Prot
Match: O14069 (Probable 60S ribosomal protein L28e OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpl44 PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.3e-12
Identity = 46/135 (34.07%), Postives = 73/135 (54.07%), Query Frame = 0


Query: 3   AVPGQLIWEIVKRNNSFLVK--EFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 62
           +V   LIW++++ NN FLVK  EFG    G+QF++E  N+   N+ + SGL N K V +Q
Sbjct: 2   SVSNDLIWQVIRDNNRFLVKRPEFG----GIQFNREPVNVSGKNAQRFSGLCNDKAVGVQ 61

Query: 63  PGGKDQSILFATTKSKKQNKPSSLLHKSLM-KKEFRRMAKAVTNQVGDNYYRPDLKRDAL 122
                  +L   T  K   KP+ L  K ++     R+  K++  ++G   YR DL + ++
Sbjct: 62  ANSPRGVVLITKTNPKNAQKPAKLFRKDVIANASSRKTYKSIAGRIGRTGYRDDLVKVSV 121

Query: 123 ARLSAVNRSLKVAKS 135
           AR SA+  S +  K+
Sbjct: 122 ARASAILSSQRPKKT 132

[Close]

BLAST of Cp4.1LG02g14430 vs. ExPASy Swiss-Prot
Match: Q962T2 (60S ribosomal protein L28 OS=Spodoptera frugiperda OX=7108 GN=RpL28 PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.9e-11
Identity = 46/127 (36.22%), Postives = 65/127 (51.18%), Query Frame = 0


Query: 8   LIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQPGGKDQS 67
           L W I++ NN+FLVK   +      FSKE NN+ NLNSY+++GL  KK V +      + 
Sbjct: 5   LNWMIIRNNNAFLVK---KRNIKKPFSKEPNNVTNLNSYRYNGLIQKKAVGVVENPDRKG 64

Query: 68  ILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALARLSAVNR 127
                 K+K  NKP+    +   K   RR    V   +  N+YR DL +  L R SA+ R
Sbjct: 65  FTVVYKKAKATNKPAKNAVRRQFKAGARRSLYKVKRLLKANHYRTDLSKATLRRASAILR 124

Query: 128 SLKVAKS 135
           S +  K+
Sbjct: 125 SQRPIKA 128

[Close]

BLAST of Cp4.1LG02g14430 vs. ExPASy Swiss-Prot
Match: Q9VZS5 (60S ribosomal protein L28 OS=Drosophila melanogaster OX=7227 GN=RpL28 PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.7e-10
Identity = 47/136 (34.56%), Postives = 69/136 (50.74%), Query Frame = 0


Query: 3   AVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQPG 62
           A    L W I++ NN+FL+K   +      FS E NNL +++SY++SG+ +KKT+ + P 
Sbjct: 2   ATSSHLNWLIIRNNNAFLLK---KRDVKKPFSTEPNNLASVSSYRYSGIVHKKTLGVVPA 61

Query: 63  GKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALARL 122
              +       K K   +P+    +   K   RR  K + N +  + YR DL + AL R 
Sbjct: 62  ADKKGFTAVLKKGKYAQRPAKNTVRVDFKAGPRRSLKKLKNLLIGSKYRKDLTQAALRRA 121

Query: 123 SAVNRSLKVAKSGVKK 139
           SAV RS K A    KK
Sbjct: 122 SAVLRSQKPAPVKGKK 134

[Close]

BLAST of Cp4.1LG02g14430 vs. NCBI nr
Match: XP_022949503.1 (60S ribosomal protein L28-2-like [Cucurbita moschata] >XP_022998347.1 60S ribosomal protein L28-2-like [Cucurbita maxima] >XP_023523885.1 60S ribosomal protein L28-2-like [Cucurbita pepo subsp. pepo] >KAG7036445.1 60S ribosomal protein L28-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 285 bits (730), Expect = 8.06e-97
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60
           MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALA 120
           PGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALA
Sbjct: 61  PGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALKSRGRK 150
           RLSAVNRSLKVAKSGVKKRNRQALKSRGRK
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKSRGRK 150

[Close]

BLAST of Cp4.1LG02g14430 vs. NCBI nr
Match: XP_038886678.1 (60S ribosomal protein L28-2-like [Benincasa hispida])

HSP 1 Score: 271 bits (693), Expect = 3.54e-91
Identity = 144/150 (96.00%), Postives = 145/150 (96.67%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60
           MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALA 120
           PGGKDQSIL ATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQV DNYYRPDLK+ ALA
Sbjct: 61  PGGKDQSILLATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALKSRGRK 150
           RLSAVNRSLKVAKSGVKKRNRQALKS  RK
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKSNVRK 150

[Close]

BLAST of Cp4.1LG02g14430 vs. NCBI nr
Match: XP_008447584.1 (PREDICTED: 60S ribosomal protein L28-2-like [Cucumis melo] >XP_008447585.1 PREDICTED: 60S ribosomal protein L28-2-like [Cucumis melo] >XP_008447586.1 PREDICTED: 60S ribosomal protein L28-2-like [Cucumis melo] >KAA0061117.1 60S ribosomal protein L28-2-like [Cucumis melo var. makuwa] >TYK03788.1 60S ribosomal protein L28-2-like [Cucumis melo var. makuwa])

HSP 1 Score: 268 bits (686), Expect = 3.86e-90
Identity = 141/146 (96.58%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60
           MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKE NNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALA 120
           PGGKDQSIL ATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQV DNYYRPDLK+ ALA
Sbjct: 61  PGGKDQSILLATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALKS 146
           RLSAVNRSLKVAKSGVKKRNRQALKS
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKS 146

[Close]

BLAST of Cp4.1LG02g14430 vs. NCBI nr
Match: XP_004146830.1 (60S ribosomal protein L28-2 [Cucumis sativus] >KGN59836.1 hypothetical protein Csa_000918 [Cucumis sativus])

HSP 1 Score: 267 bits (682), Expect = 1.57e-89
Identity = 140/146 (95.89%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60
           MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKE+NNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALA 120
           PGGKDQSIL ATTKSKKQNKPSS LHKSLMKKEFRRMAKAVTNQV DNYYRPDLK+ ALA
Sbjct: 61  PGGKDQSILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALKS 146
           RLSAVNRSLKVAKSGVKKRNRQALKS
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKS 146

[Close]

BLAST of Cp4.1LG02g14430 vs. NCBI nr
Match: XP_022956223.1 (60S ribosomal protein L28-2-like [Cucurbita moschata] >XP_022980747.1 60S ribosomal protein L28-2-like [Cucurbita maxima] >XP_023529098.1 60S ribosomal protein L28-2-like [Cucurbita pepo subsp. pepo] >KAG7018296.1 60S ribosomal protein L28-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 265 bits (678), Expect = 6.85e-89
Identity = 139/150 (92.67%), Postives = 144/150 (96.00%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60
           MAAV GQL+WEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVSGQLVWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALA 120
           PGGKDQS+L ATTKSKKQNKPSSLLHKSL+KKEF +MAKAVTNQV DNYYRPDLK+ ALA
Sbjct: 61  PGGKDQSVLLATTKSKKQNKPSSLLHKSLLKKEFSKMAKAVTNQVADNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALKSRGRK 150
           RLSAVNRSLKVAKSGVKKRNRQALKS GRK
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKSGGRK 150

[Close]

BLAST of Cp4.1LG02g14430 vs. ExPASy TrEMBL
Match: A0A6J1K7P5 (60S ribosomal protein L28-2-like OS=Cucurbita maxima OX=3661 GN=LOC111493014 PE=3 SV=1)

HSP 1 Score: 285 bits (730), Expect = 3.90e-97
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60
           MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALA 120
           PGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALA
Sbjct: 61  PGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALKSRGRK 150
           RLSAVNRSLKVAKSGVKKRNRQALKSRGRK
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKSRGRK 150

[Close]

BLAST of Cp4.1LG02g14430 vs. ExPASy TrEMBL
Match: A0A6J1GC99 (60S ribosomal protein L28-2-like OS=Cucurbita moschata OX=3662 GN=LOC111452830 PE=3 SV=1)

HSP 1 Score: 285 bits (730), Expect = 3.90e-97
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60
           MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALA 120
           PGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALA
Sbjct: 61  PGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALKSRGRK 150
           RLSAVNRSLKVAKSGVKKRNRQALKSRGRK
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKSRGRK 150

[Close]

BLAST of Cp4.1LG02g14430 vs. ExPASy TrEMBL
Match: A0A1S3BIE3 (60S ribosomal protein L28-2-like OS=Cucumis melo OX=3656 GN=LOC103490001 PE=3 SV=1)

HSP 1 Score: 268 bits (686), Expect = 1.87e-90
Identity = 141/146 (96.58%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60
           MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKE NNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALA 120
           PGGKDQSIL ATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQV DNYYRPDLK+ ALA
Sbjct: 61  PGGKDQSILLATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALKS 146
           RLSAVNRSLKVAKSGVKKRNRQALKS
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKS 146

[Close]

BLAST of Cp4.1LG02g14430 vs. ExPASy TrEMBL
Match: A0A5D3BXS0 (60S ribosomal protein L28-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001760 PE=3 SV=1)

HSP 1 Score: 268 bits (686), Expect = 1.87e-90
Identity = 141/146 (96.58%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60
           MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKE NNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEPNNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALA 120
           PGGKDQSIL ATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQV DNYYRPDLK+ ALA
Sbjct: 61  PGGKDQSILLATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALKS 146
           RLSAVNRSLKVAKSGVKKRNRQALKS
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKS 146

[Close]

BLAST of Cp4.1LG02g14430 vs. ExPASy TrEMBL
Match: A0A0A0LIG3 (Ribosomal_L28e domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G849920 PE=3 SV=1)

HSP 1 Score: 267 bits (682), Expect = 7.61e-90
Identity = 140/146 (95.89%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60
           MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKE+NNLYNLNSYKHSGLANKKTVTIQ
Sbjct: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKEANNLYNLNSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALA 120
           PGGKDQSIL ATTKSKKQNKPSS LHKSLMKKEFRRMAKAVTNQV DNYYRPDLK+ ALA
Sbjct: 61  PGGKDQSILLATTKSKKQNKPSSSLHKSLMKKEFRRMAKAVTNQVADNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQALKS 146
           RLSAVNRSLKVAKSGVKKRNRQALKS
Sbjct: 121 RLSAVNRSLKVAKSGVKKRNRQALKS 146

[Close]

BLAST of Cp4.1LG02g14430 vs. TAIR 10
Match: AT4G29410.1 (Ribosomal L28e protein family )

HSP 1 Score: 211.5 bits (537), Expect = 4.8e-55
Identity = 106/143 (74.13%), Postives = 123/143 (86.01%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60
           MA VPGQLIWEIVKRNN FLVK+FGRG A VQFSKESNNL N+NSYKHSGLANKKTVTIQ
Sbjct: 1   MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALA 120
             GKDQ ++  TTK+K+QNKP   ++KS++KKEF RM+K V NQV DNYYRPDLK+ ALA
Sbjct: 61  AAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQA 144
           RLSA+++ L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGPKRRNRQA 143

[Close]

BLAST of Cp4.1LG02g14430 vs. TAIR 10
Match: AT4G29410.2 (Ribosomal L28e protein family )

HSP 1 Score: 211.5 bits (537), Expect = 4.8e-55
Identity = 106/143 (74.13%), Postives = 123/143 (86.01%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60
           MA VPGQLIWEIVKRNN FLVK+FGRG A VQFSKESNNL N+NSYKHSGLANKKTVTIQ
Sbjct: 1   MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALA 120
             GKDQ ++  TTK+K+QNKP   ++KS++KKEF RM+K V NQV DNYYRPDLK+ ALA
Sbjct: 61  AAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQA 144
           RLSA+++ L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGPKRRNRQA 143

[Close]

BLAST of Cp4.1LG02g14430 vs. TAIR 10
Match: AT2G19730.1 (Ribosomal L28e protein family )

HSP 1 Score: 206.5 bits (524), Expect = 1.5e-53
Identity = 104/143 (72.73%), Postives = 124/143 (86.71%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60
           MA VPGQLIWEIVK NN FLVK+FGRG + VQFSKE+NNL N++SYKHSGLANKKTVTIQ
Sbjct: 1   MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALA 120
              KDQ+++ ATTK+KKQNKP   ++KS++KKEF RM+KAV NQV DNYYRPDLK+ ALA
Sbjct: 61  AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQA 144
           RLSA+++ L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA 143

[Close]

BLAST of Cp4.1LG02g14430 vs. TAIR 10
Match: AT2G19730.2 (Ribosomal L28e protein family )

HSP 1 Score: 206.5 bits (524), Expect = 1.5e-53
Identity = 104/143 (72.73%), Postives = 124/143 (86.71%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60
           MA VPGQLIWEIVK NN FLVK+FGRG + VQFSKE+NNL N++SYKHSGLANKKTVTIQ
Sbjct: 1   MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALA 120
              KDQ+++ ATTK+KKQNKP   ++KS++KKEF RM+KAV NQV DNYYRPDLK+ ALA
Sbjct: 61  AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQA 144
           RLSA+++ L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA 143

[Close]

BLAST of Cp4.1LG02g14430 vs. TAIR 10
Match: AT2G19730.3 (Ribosomal L28e protein family )

HSP 1 Score: 206.5 bits (524), Expect = 1.5e-53
Identity = 104/143 (72.73%), Postives = 124/143 (86.71%), Query Frame = 0


Query: 1   MAAVPGQLIWEIVKRNNSFLVKEFGRGTAGVQFSKESNNLYNLNSYKHSGLANKKTVTIQ 60
           MA VPGQLIWEIVK NN FLVK+FGRG + VQFSKE+NNL N++SYKHSGLANKKTVTIQ
Sbjct: 1   MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQ 60

Query: 61  PGGKDQSILFATTKSKKQNKPSSLLHKSLMKKEFRRMAKAVTNQVGDNYYRPDLKRDALA 120
              KDQ+++ ATTK+KKQNKP   ++KS++KKEF RM+KAV NQV DNYYRPDLK+ ALA
Sbjct: 61  AADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALA 120

Query: 121 RLSAVNRSLKVAKSGVKKRNRQA 144
           RLSA+++ L+VAKSG K+RNRQA
Sbjct: 121 RLSAISKGLRVAKSGAKQRNRQA 143

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g14430 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M0E2	6.8e-54	74.13	60S ribosomal protein L28-2 OS=Arabidopsis thaliana OX=3702 GN=RPL28C PE=2 SV=1	[more]
O82204	2.2e-52	72.73	60S ribosomal protein L28-1 OS=Arabidopsis thaliana OX=3702 GN=RPL28A PE=1 SV=1	[more]
O14069	1.3e-12	34.07	Probable 60S ribosomal protein L28e OS=Schizosaccharomyces pombe (strain 972 / A...	[more]
Q962T2	1.9e-11	36.22	60S ribosomal protein L28 OS=Spodoptera frugiperda OX=7108 GN=RpL28 PE=2 SV=1	[more]
Q9VZS5	2.7e-10	34.56	60S ribosomal protein L28 OS=Drosophila melanogaster OX=7227 GN=RpL28 PE=1 SV=1	[more]

BLAST of Cp4.1LG02g14430 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022949503.1	8.06e-97	100.00	60S ribosomal protein L28-2-like [Cucurbita moschata] >XP_022998347.1 60S riboso...	[more]
XP_038886678.1	3.54e-91	96.00	60S ribosomal protein L28-2-like [Benincasa hispida]	[more]
XP_008447584.1	3.86e-90	96.58	PREDICTED: 60S ribosomal protein L28-2-like [Cucumis melo] >XP_008447585.1 PREDI...	[more]
XP_004146830.1	1.57e-89	95.89	60S ribosomal protein L28-2 [Cucumis sativus] >KGN59836.1 hypothetical protein C...	[more]
XP_022956223.1	6.85e-89	92.67	60S ribosomal protein L28-2-like [Cucurbita moschata] >XP_022980747.1 60S riboso...	[more]

BLAST of Cp4.1LG02g14430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K7P5	3.90e-97	100.00	60S ribosomal protein L28-2-like OS=Cucurbita maxima OX=3661 GN=LOC111493014 PE=...	[more]
A0A6J1GC99	3.90e-97	100.00	60S ribosomal protein L28-2-like OS=Cucurbita moschata OX=3662 GN=LOC111452830 P...	[more]
A0A1S3BIE3	1.87e-90	96.58	60S ribosomal protein L28-2-like OS=Cucumis melo OX=3656 GN=LOC103490001 PE=3 SV...	[more]
A0A5D3BXS0	1.87e-90	96.58	60S ribosomal protein L28-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A0A0LIG3	7.61e-90	95.89	Ribosomal_L28e domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G849...	[more]

BLAST of Cp4.1LG02g14430 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G29410.1	4.8e-55	74.13	Ribosomal L28e protein family	[more]
AT4G29410.2	4.8e-55	74.13	Ribosomal L28e protein family	[more]
AT2G19730.1	1.5e-53	72.73	Ribosomal L28e protein family	[more]
AT2G19730.2	1.5e-53	72.73	Ribosomal L28e protein family	[more]
AT2G19730.3	1.5e-53	72.73	Ribosomal L28e protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.390.110		coord: 6..134 e-value: 4.1E-43 score: 148.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 132..150
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 131..150
None	No IPR available	PANTHER	PTHR10544:SF19	60S RIBOSOMAL PROTEIN L28-1-LIKE	coord: 1..150
IPR029004	Ribosomal L28e/Mak16	PFAM	PF01778	Ribosomal_L28e	coord: 8..128 e-value: 1.6E-34 score: 119.1
IPR002672	Ribosomal protein L28e	PANTHER	PTHR10544	60S RIBOSOMAL PROTEIN L28	coord: 1..150

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG02g14430.1	Cp4.1LG02g14430.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome