Cp4.1LG02g03710 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG02g03710
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial
Location	Cp4.1LG02: 2935881 .. 2939217 (-)
RNA-Seq Expression	Cp4.1LG02g03710
Synteny	Cp4.1LG02g03710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATATAATTTAATTCTGTGGGGGATATTTTTCCAAAACGATACATGTAAAGATAGAGCCGCAGTGGAGAACTTCGCGTTTGGAAATGGCAAGTGGAGCTCTGCGTTTGCTCAAAGGAGCTTCATCACTTCCATCGTTGAATCCCCAAATCTTCATCTCTACCAGTTTGAATTCGCTTCCTGTTTCTAATATCAGAATCCGGAAATGTTCGACTGCTCCTGGAATTCGTGCCTCTCTTCAACCTCCCGATGTTCCTCGTTTAGCTGAAACAGCTCGAATTTCCCTCAATCCGAGTGAGGTATGTCAGACCTTCACCATATCAATGTTTTCTTCTGTTTCTTCGATCTTCTTCTTCTTCAAGTAAAATCCGCTTCTCGCTTTCAGGTTGAAGAATTTGCTCCTAAGATTCGACAGGTTGTTGACTGGTAAGCTCCGCTCTCTCTCTCTCTCTCTCACGCACACAGAAACTGATAGACCTTGAAACATATTAGGCATCTAGATAAATTTAGGGTAAAAGAATGCTGTTCAAAGTATGTGACCTCCGCGACTGTGGCTTCACTCAGACTTGGTTATCGTAAATGTTTGGTTATTATCTTAGGTGAGGCTGAAAAGATGATTGTATTTGTTGGTGTTTGGCCTCTAGGTAACTTACTATGAGACAGTTGCCTCTTATGTCCTACACATTGAGGGGAATTCTTCAGGGGCAGGTTGTAAAATGAGATTCTATGAATTTACATTTACTTCCCTCAGCTGAAGAAAGGGTGACAAGATCAAATGCGATTATGTTGTTGTCTTTATAACCTGTTTTACATTAACTTTCGGGGTTATCGATGATCTTATGAGCGAATTGGAACATTTAATGCAGTTCTGTTATCTCTAGTTTTGCTTTGAAATTTTGAATACTTGAAACTTCCATTTCCTCCCAGTGTTCATTGTTGATTTCTTAACAATGTGCAAGCATCAAACTCAGGAATCTAGAGAACCCTCCACATTAGGATTACTGTTGTAATCATCCGCATCTTTCTTCTTCTTCTTCTTCAAATAGTGAAAAGTTACAAAAGGTGCATCATAGGGGGTTACAAAGGACAAGCCCAATTAGTACTAAAGCAAGCATAGAATCATGGTTACGAAAAATAAGAGTGCACCAAGGTAAGCAAATTGAACAAATTAAATTCCAAACTTCCTACATTACAGCCATTTCTGTTACAATAATAATGTAAACAGCCATTTAACCATATTTGCTAATAATGATGTTTATCTGGGATTTTTTTTTTCTTTCTCTTTTGAGAGAAATGGCACGCCAATTTGGATGTTAAAGCCACATTTCTGTTTTTGAGCTTGTCCAAGTCGAGATCTTCTTGCTCAGGATTGCAAGACCAAGTCTGCACTTAATGAGGTGACTTCACCACTGTGGCACCATCCCCTTATGCCCACAAAATGTTTTTTTACACTCTTTTTTATTTTGGAGATTTTTTTAACAAATTCATAAAAGTAAAAGTAGTAGGTTGAGATGCTGGCTAGAACTGACTGGATTAAAATCTTATATCTGTATGTCGGTTGAGTCACTCAAGAGTTTAGACTATGTGCTGAGATAGAAGCACTGGGAACATGATTTATATATCTTTTTATGAAATTGTTCGTTCTATTAACTCTCTGTTTGAGTTTTTCATTCTTCCAATGAAATTGTTCATTCGGTTAAGTTTATTCTCTTGGCTGTTGTGGTTTCTATTAACTTAATATGATAATATTATGTTTTAGGTTTGGGCAGCTCCAGGCGGTTGATCTTCAAAGCATTGAGCCTTCCATTAGGGCAGGTACATGCAACAACTCTTAGGAGTTCATTACTGTCAATCATCTTGAAACTTGTTTGCTGTTCTTCTAGCCATGCTTTCGCTTGTTTCTCACTGTTAAGTGTTGATTTCAAATCGCACGTCTATTCAAAATGGAAATTTAAATCACATAATCGTTATTTTCATTGGAAAATACTGATCATAAGATGTGGAGGCATTGCCTACTTCTCACGACACTGGTGATGCAATGAAGCATATCGTGGAGGGGGATAGCAGCAATAGGACCCGAAACTTAGCACTGTTTACTTGAGCTATCATGGCCAGGATAATTGATTACGATTTCAGATACCAAAAAAGCTGCTCCCCCACCCACAGATGTTTATATTTCTTTCTGGGAGATTTTTGGATCATAATTTTATCAAGTTATTAAAATGCTAAAAACCTCAAGACAGTTAAGACGGTTAGGAATCACGACCCTTCACAATAGCATGATATTGTCCACTTTGAGCGTAAGCTCTCATGACTTTGCTTTTGGCTTCCTCAAAGACCTCTTACGAATGAAAATGTATTCCTTACTTATAAACAACCTCTTAATTAGTCAATATGGGACTCCTCTTCCAACCCTCCTCAACTCCTCAACAAAGACAAACACCTCAACTCCTCAACAAAGACAAACAGCTAGAGTGCAGCATACTGATTTTCCTAATATTTACAGATACTGAAGGTGGCAATCAGCGGGATGATGTTTCTGAAACATTCGAAAACAGGTAACCTGGTTATTTTGCAACTTGTGCTGTTACAACATTGGGCAGGAAATTTCAGTCCTAACTCCATTTTTTCTTTTGTTTACCCCCAGAGAGGCCATGATTGGCGCAGTTCCAGTCTTTGATGAGCCGTATATCAGAGTTCCTAAAGTTCTGAATAAGGAGTAGTTACTAAGGTAGGCAGCTTGTTTCATCTGTTTCTGTTCTTCATTAATGGCATGTTCTTCAACATCTTATGTCGCCGAAATGATTAACTTTGCTACAAGTTACTCGGGGATATTCGAACTACAGTTCAAATTAATCACCCATAAATCCTAATCTTAGTTCAAATGTCTAGTTTCCCCATTTTTTAAAATCCAAAACTCAAATTCTATGTTGGAGAAAGGGAGCTGTCCTCCTTGTTGAGCTCATCAACTCTCCTTGGAGAGATAATGGAGAGAGATTCAGGTCAATCTAGCCTCTTCATCTCATAAATCCATGTCCAGATTCATATTGTTTGTAGATATTATTTTTCAGTTCAGAGTCGTCTCTTAGGCTGCTTCAAGGATGGCTTTGGTGGGTCCATTGGTTACCTAAGTATGAGGTGCAAATGGCTAGCAAGAATGTTCAGAATAATAATTATTTAGCAATTTGGTCAACTCTGTTAGATGAACAGACTTTTCACAATGGTATGATATTGTCCACTTTGAGCATAAACTCTCGTGTCTTTGTTTTAGACTTCTCCAAAATGCCTCATATCAATGGAGATAGTATTTGTTGATTATAAACCCCACGGTTATAAACC

mRNA sequence

AATATAATTTAATTCTGTGGGGGATATTTTTCCAAAACGATACATGTAAAGATAGAGCCGCAGTGGAGAACTTCGCGTTTGGAAATGGCAAGTGGAGCTCTGCGTTTGCTCAAAGGAGCTTCATCACTTCCATCGTTGAATCCCCAAATCTTCATCTCTACCAGTTTGAATTCGCTTCCTGTTTCTAATATCAGAATCCGGAAATGTTCGACTGCTCCTGGAATTCGTGCCTCTCTTCAACCTCCCGATGTTCCTCGTTTAGCTGAAACAGCTCGAATTTCCCTCAATCCGAGTGAGGTTGAAGAATTTGCTCCTAAGATTCGACAGGTTGTTGACTGGTTTGGGCAGCTCCAGGCGGTTGATCTTCAAAGCATTGAGCCTTCCATTAGGGCAGATACTGAAGGTGGCAATCAGCGGGATGATGTTTCTGAAACATTCGAAAACAGAGAGGCCATGATTGGCGCAGTTCCAGTCTTTGATGAGCCGTATATCAGAGTTCCTAAAGTTCTGAATAAGGAGTAGTTACTAAGTTCAGAGTCGTCTCTTAGGCTGCTTCAAGGATGGCTTTGGTGGGTCCATTGGTTACCTAAGTATGAGGTGCAAATGGCTAGCAAGAATGTTCAGAATAATAATTATTTAGCAATTTGGTCAACTCTGTTAGATGAACAGACTTTTCACAATGGTATGATATTGTCCACTTTGAGCATAAACTCTCGTGTCTTTGTTTTAGACTTCTCCAAAATGCCTCATATCAATGGAGATAGTATTTGTTGATTATAAACCCCACGGTTATAAACC

Coding sequence (CDS)

ATGGCAAGTGGAGCTCTGCGTTTGCTCAAAGGAGCTTCATCACTTCCATCGTTGAATCCCCAAATCTTCATCTCTACCAGTTTGAATTCGCTTCCTGTTTCTAATATCAGAATCCGGAAATGTTCGACTGCTCCTGGAATTCGTGCCTCTCTTCAACCTCCCGATGTTCCTCGTTTAGCTGAAACAGCTCGAATTTCCCTCAATCCGAGTGAGGTTGAAGAATTTGCTCCTAAGATTCGACAGGTTGTTGACTGGTTTGGGCAGCTCCAGGCGGTTGATCTTCAAAGCATTGAGCCTTCCATTAGGGCAGATACTGAAGGTGGCAATCAGCGGGATGATGTTTCTGAAACATTCGAAAACAGAGAGGCCATGATTGGCGCAGTTCCAGTCTTTGATGAGCCGTATATCAGAGTTCCTAAAGTTCTGAATAAGGAGTAG

Protein sequence

MASGALRLLKGASSLPSLNPQIFISTSLNSLPVSNIRIRKCSTAPGIRASLQPPDVPRLAETARISLNPSEVEEFAPKIRQVVDWFGQLQAVDLQSIEPSIRADTEGGNQRDDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE

Homology

[Close]

BLAST of Cp4.1LG02g03710 vs. ExPASy Swiss-Prot
Match: D7STK2 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Vitis vinifera OX=29760 GN=GATC PE=3 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.4e-40
Identity = 90/145 (62.07%), Postives = 109/145 (75.17%), Query Frame = 0


Query: 1   MASGALRLLKGASSLPSLNPQIFISTSLNSLPVSNIRIRKCSTAPGIRASLQPPDVPRLA 60
           M S AL LLK  ++      +  + TS ++   S   IR  + +   R++L PPD+PRLA
Sbjct: 1   MGSRALLLLKATTA------ETLLFTSKSTF--SKALIRNSTRSFSTRSALLPPDLPRLA 60

Query: 61  ETARISLNPSEVEEFAPKIRQVVDWFGQLQAVDLQSIEPSIRADTEGGNQRDDVSETFEN 120
           ETARISL P EVEEFAPKIRQV+DWFGQLQAVDLQSIEPSIRADTEG N RDD  ETFEN
Sbjct: 61  ETARISLTPHEVEEFAPKIRQVIDWFGQLQAVDLQSIEPSIRADTEGDNLRDDSPETFEN 120

Query: 121 REAMIGAVPVFDEPYIRVPKVLNKE 146
           REA+I A+P ++EPY++VPKVLNK+
Sbjct: 121 REAIIAAIPSYEEPYLKVPKVLNKD 137

[Close]

BLAST of Cp4.1LG02g03710 vs. ExPASy Swiss-Prot
Match: B9RRX2 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Ricinus communis OX=3988 GN=GATC PE=3 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 5.0e-38
Identity = 92/146 (63.01%), Postives = 106/146 (72.60%), Query Frame = 0


Query: 1   MASGALRLLKGASSLPSLNPQIFISTSLNSLPVSNIRI-RKCSTAPGIRASLQPPDVPRL 60
           M S AL LLK A  LP L  QI         P S +   R+ S      +SLQPPDV RL
Sbjct: 1   MGSRALLLLKVA--LP-LKHQIKCLNYTKITPASELLTKRRFSIKATNGSSLQPPDVSRL 60

Query: 61  AETARISLNPSEVEEFAPKIRQVVDWFGQLQAVDLQSIEPSIRADTEGGNQRDDVSETFE 120
           AETARISLN +EVEEFAPKIRQV+DWFGQLQAVDL S+EP+IRAD+EG N RDDV ETF 
Sbjct: 61  AETARISLNQNEVEEFAPKIRQVIDWFGQLQAVDLNSVEPAIRADSEGENLRDDVPETFS 120

Query: 121 NREAMIGAVPVFDEPYIRVPKVLNKE 146
            REA+I AVP +++PY++VPKVLNKE
Sbjct: 121 EREAIIAAVPSYEKPYVKVPKVLNKE 143

[Close]

BLAST of Cp4.1LG02g03710 vs. ExPASy Swiss-Prot
Match: B9INH0 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Populus trichocarpa OX=3694 GN=GATC PE=3 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.2e-34
Identity = 84/145 (57.93%), Postives = 102/145 (70.34%), Query Frame = 0


Query: 1   MASGALRLLKGASSLPSLNPQIFISTSLNSLPVSNIRIRKCSTAPGIRASLQPPDVPRLA 60
           M S A+ LLKG S  P  +  +F+       P  +IR R  + A    +SL+PPDV RLA
Sbjct: 1   MGSRAVLLLKGPS--PPKHSILFLLNHKKISPAPSIR-RFTTKATANGSSLEPPDVARLA 60

Query: 61  ETARISLNPSEVEEFAPKIRQVVDWFGQLQAVDLQSIEPSIRADTEGGNQRDDVSETFEN 120
           ETARISL P +VEEF PKIRQV+DW   L +VDL S+EPSIRADTEG N R D  ETFEN
Sbjct: 61  ETARISLTPQQVEEFGPKIRQVIDWHA-LLSVDLDSVEPSIRADTEGDNLRHDNPETFEN 120

Query: 121 REAMIGAVPVFDEPYIRVPKVLNKE 146
           REA+I AVP +++PY++VPKVLNKE
Sbjct: 121 REAIIAAVPNYEDPYVKVPKVLNKE 141

[Close]

BLAST of Cp4.1LG02g03710 vs. ExPASy Swiss-Prot
Match: A2XK57 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=GATC PE=3 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 3.7e-33
Identity = 68/97 (70.10%), Postives = 83/97 (85.57%), Query Frame = 0


Query: 50  SLQPPDVPRLAETARISLNPSEVEEFAPKIRQVVDWFGQLQAVDLQSIEPSIRADTEGGN 109
           +L+PPD+PRLA  ARISL+P E EEFAPKIRQVVDWFGQLQAVDL+S+EPS+RA T  GN
Sbjct: 57  ALEPPDLPRLANAARISLSPEEAEEFAPKIRQVVDWFGQLQAVDLESVEPSLRAGTAAGN 116

Query: 110 Q-RDDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE 146
             R+D  ETF NR+A+I +VP +D+PYI+VP+VLNKE
Sbjct: 117 SLREDRPETFTNRDAIIESVPSYDDPYIKVPRVLNKE 153

[Close]

BLAST of Cp4.1LG02g03710 vs. ExPASy Swiss-Prot
Match: Q7XZZ1 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=GATC PE=2 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 3.7e-33
Identity = 68/97 (70.10%), Postives = 83/97 (85.57%), Query Frame = 0


Query: 50  SLQPPDVPRLAETARISLNPSEVEEFAPKIRQVVDWFGQLQAVDLQSIEPSIRADTEGGN 109
           +L+PPD+PRLA  ARISL+P E EEFAPKIRQVVDWFGQLQAVDL+S+EPS+RA T  GN
Sbjct: 57  ALEPPDLPRLANAARISLSPEEAEEFAPKIRQVVDWFGQLQAVDLESVEPSLRAGTAAGN 116

Query: 110 Q-RDDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE 146
             R+D  ETF NR+A+I +VP +D+PYI+VP+VLNKE
Sbjct: 117 SLREDRPETFTNRDAIIESVPSYDDPYIKVPRVLNKE 153

[Close]

BLAST of Cp4.1LG02g03710 vs. NCBI nr
Match: XP_023521629.1 (glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucurbita pepo subsp. pepo] >XP_023521637.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 280 bits (716), Expect = 7.56e-95
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MASGALRLLKGASSLPSLNPQIFISTSLNSLPVSNIRIRKCSTAPGIRASLQPPDVPRLA 60
           MASGALRLLKGASSLPSLNPQIFISTSLNSLPVSNIRIRKCSTAPGIRASLQPPDVPRLA
Sbjct: 1   MASGALRLLKGASSLPSLNPQIFISTSLNSLPVSNIRIRKCSTAPGIRASLQPPDVPRLA 60

Query: 61  ETARISLNPSEVEEFAPKIRQVVDWFGQLQAVDLQSIEPSIRADTEGGNQRDDVSETFEN 120
           ETARISLNPSEVEEFAPKIRQVVDWFGQLQAVDLQSIEPSIRADTEGGNQRDDVSETFEN
Sbjct: 61  ETARISLNPSEVEEFAPKIRQVVDWFGQLQAVDLQSIEPSIRADTEGGNQRDDVSETFEN 120

Query: 121 REAMIGAVPVFDEPYIRVPKVLNKE 145
           REAMIGAVPVFDEPYIRVPKVLNKE
Sbjct: 121 REAMIGAVPVFDEPYIRVPKVLNKE 145

[Close]

BLAST of Cp4.1LG02g03710 vs. NCBI nr
Match: XP_022941306.1 (glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucurbita moschata] >XP_022941307.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucurbita moschata] >KAG6608102.1 Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 275 bits (704), Expect = 5.11e-93
Identity = 142/145 (97.93%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MASGALRLLKGASSLPSLNPQIFISTSLNSLPVSNIRIRKCSTAPGIRASLQPPDVPRLA 60
           M SGALRLLKGASSLPSLNPQIFISTSLNSLPVS+IRIRKCSTAPGIRASLQPPDVPRLA
Sbjct: 1   MGSGALRLLKGASSLPSLNPQIFISTSLNSLPVSSIRIRKCSTAPGIRASLQPPDVPRLA 60

Query: 61  ETARISLNPSEVEEFAPKIRQVVDWFGQLQAVDLQSIEPSIRADTEGGNQRDDVSETFEN 120
           ETARISLNP+EVEEFAPKIRQVVDWFGQLQAVDLQSIEPSIRADTEGGNQRDDVSETFEN
Sbjct: 61  ETARISLNPNEVEEFAPKIRQVVDWFGQLQAVDLQSIEPSIRADTEGGNQRDDVSETFEN 120

Query: 121 REAMIGAVPVFDEPYIRVPKVLNKE 145
           REAMIGAVPVFDEPYIRVPKVLNKE
Sbjct: 121 REAMIGAVPVFDEPYIRVPKVLNKE 145

[Close]

BLAST of Cp4.1LG02g03710 vs. NCBI nr
Match: XP_022981070.1 (glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial-like [Cucurbita maxima] >XP_022981071.1 glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 271 bits (693), Expect = 2.43e-91
Identity = 139/145 (95.86%), Postives = 143/145 (98.62%), Query Frame = 0


Query: 1   MASGALRLLKGASSLPSLNPQIFISTSLNSLPVSNIRIRKCSTAPGIRASLQPPDVPRLA 60
           M SGALRLLKGASSLP LNPQIFISTSLN+LPVSNIRI+KCSTAPGIRASLQPPDVPRLA
Sbjct: 1   MGSGALRLLKGASSLPLLNPQIFISTSLNTLPVSNIRIQKCSTAPGIRASLQPPDVPRLA 60

Query: 61  ETARISLNPSEVEEFAPKIRQVVDWFGQLQAVDLQSIEPSIRADTEGGNQRDDVSETFEN 120
           ETARISLNPSEVEEFAPKIRQVVDWFGQL+AVDLQSIEPSIRADTEGGNQRDDVSETFEN
Sbjct: 61  ETARISLNPSEVEEFAPKIRQVVDWFGQLEAVDLQSIEPSIRADTEGGNQRDDVSETFEN 120

Query: 121 REAMIGAVPVFDEPYIRVPKVLNKE 145
           REA+IGAVPVFDEPYIRVPKVLNKE
Sbjct: 121 REALIGAVPVFDEPYIRVPKVLNKE 145

[Close]

BLAST of Cp4.1LG02g03710 vs. NCBI nr
Match: XP_008466091.1 (PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucumis melo] >KAA0038633.1 glutamyl-tRNA(Gln) amidotransferase subunit C [Cucumis melo var. makuwa] >TYK31232.1 glutamyl-tRNA(Gln) amidotransferase subunit C [Cucumis melo var. makuwa])

HSP 1 Score: 234 bits (596), Expect = 1.49e-76
Identity = 122/145 (84.14%), Postives = 130/145 (89.66%), Query Frame = 0


Query: 1   MASGALRLLKGASSLPSLNPQIFISTSLNSLPVSNIRIRKCSTAPGIRASLQPPDVPRLA 60
           M S AL LLKGASS PSL  QIFIST+ +SLPVSNI IRK STA G+ ASLQPPDVPRLA
Sbjct: 1   MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNITIRKSSTASGVLASLQPPDVPRLA 60

Query: 61  ETARISLNPSEVEEFAPKIRQVVDWFGQLQAVDLQSIEPSIRADTEGGNQRDDVSETFEN 120
           +TARISL P++VEEFAPKI QVVDWFGQLQ VDLQSIEPSIRADTEGGNQR+DV ETFEN
Sbjct: 61  QTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVPETFEN 120

Query: 121 REAMIGAVPVFDEPYIRVPKVLNKE 145
           REAMIGAVPVFDEPYI+VPKVLNKE
Sbjct: 121 REAMIGAVPVFDEPYIKVPKVLNKE 145

[Close]

BLAST of Cp4.1LG02g03710 vs. NCBI nr
Match: KAG7031739.1 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 234 bits (597), Expect = 1.68e-76
Identity = 130/159 (81.76%), Postives = 133/159 (83.65%), Query Frame = 0


Query: 1   MASGALRLLKGASSLPSLNPQIFISTSLNSLPVSNIRIRKCSTAPGIRASLQPPDVPRLA 60
           M SGALRLLKGASSLPSLNPQIFISTSLNSLPVS+IRIRKCSTAPGIRASLQPPDVPRLA
Sbjct: 1   MGSGALRLLKGASSLPSLNPQIFISTSLNSLPVSSIRIRKCSTAPGIRASLQPPDVPRLA 60

Query: 61  ETARISLNPSEVEEFAPKIRQVVDWFGQLQAVDLQSIEPSIRADTEGGNQRDDVSETFE- 120
           ETARISLNP+EVEEFAPKIRQVVDWFGQLQAVDLQSIEPSIRAD E      D  E  + 
Sbjct: 61  ETARISLNPNEVEEFAPKIRQVVDWFGQLQAVDLQSIEPSIRADVEALPTSHDTGEAMKH 120

Query: 121 -------NR------EAMIGAVPVFDEPYIRVPKVLNKE 145
                  NR      EAMIGAVPVFDEPYIRVPKVLNKE
Sbjct: 121 IVVGDSSNRTRNLPLEAMIGAVPVFDEPYIRVPKVLNKE 159

[Close]

BLAST of Cp4.1LG02g03710 vs. ExPASy TrEMBL
Match: A0A6J1FM33 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111446647 PE=3 SV=1)

HSP 1 Score: 275 bits (704), Expect = 2.47e-93
Identity = 142/145 (97.93%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MASGALRLLKGASSLPSLNPQIFISTSLNSLPVSNIRIRKCSTAPGIRASLQPPDVPRLA 60
           M SGALRLLKGASSLPSLNPQIFISTSLNSLPVS+IRIRKCSTAPGIRASLQPPDVPRLA
Sbjct: 1   MGSGALRLLKGASSLPSLNPQIFISTSLNSLPVSSIRIRKCSTAPGIRASLQPPDVPRLA 60

Query: 61  ETARISLNPSEVEEFAPKIRQVVDWFGQLQAVDLQSIEPSIRADTEGGNQRDDVSETFEN 120
           ETARISLNP+EVEEFAPKIRQVVDWFGQLQAVDLQSIEPSIRADTEGGNQRDDVSETFEN
Sbjct: 61  ETARISLNPNEVEEFAPKIRQVVDWFGQLQAVDLQSIEPSIRADTEGGNQRDDVSETFEN 120

Query: 121 REAMIGAVPVFDEPYIRVPKVLNKE 145
           REAMIGAVPVFDEPYIRVPKVLNKE
Sbjct: 121 REAMIGAVPVFDEPYIRVPKVLNKE 145

[Close]

BLAST of Cp4.1LG02g03710 vs. ExPASy TrEMBL
Match: A0A6J1IVG1 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111480328 PE=3 SV=1)

HSP 1 Score: 271 bits (693), Expect = 1.18e-91
Identity = 139/145 (95.86%), Postives = 143/145 (98.62%), Query Frame = 0


Query: 1   MASGALRLLKGASSLPSLNPQIFISTSLNSLPVSNIRIRKCSTAPGIRASLQPPDVPRLA 60
           M SGALRLLKGASSLP LNPQIFISTSLN+LPVSNIRI+KCSTAPGIRASLQPPDVPRLA
Sbjct: 1   MGSGALRLLKGASSLPLLNPQIFISTSLNTLPVSNIRIQKCSTAPGIRASLQPPDVPRLA 60

Query: 61  ETARISLNPSEVEEFAPKIRQVVDWFGQLQAVDLQSIEPSIRADTEGGNQRDDVSETFEN 120
           ETARISLNPSEVEEFAPKIRQVVDWFGQL+AVDLQSIEPSIRADTEGGNQRDDVSETFEN
Sbjct: 61  ETARISLNPSEVEEFAPKIRQVVDWFGQLEAVDLQSIEPSIRADTEGGNQRDDVSETFEN 120

Query: 121 REAMIGAVPVFDEPYIRVPKVLNKE 145
           REA+IGAVPVFDEPYIRVPKVLNKE
Sbjct: 121 REALIGAVPVFDEPYIRVPKVLNKE 145

[Close]

BLAST of Cp4.1LG02g03710 vs. ExPASy TrEMBL
Match: A0A5A7T6R5 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cucumis melo var. makuwa OX=1194695 GN=GATC PE=3 SV=1)

HSP 1 Score: 234 bits (596), Expect = 7.23e-77
Identity = 122/145 (84.14%), Postives = 130/145 (89.66%), Query Frame = 0


Query: 1   MASGALRLLKGASSLPSLNPQIFISTSLNSLPVSNIRIRKCSTAPGIRASLQPPDVPRLA 60
           M S AL LLKGASS PSL  QIFIST+ +SLPVSNI IRK STA G+ ASLQPPDVPRLA
Sbjct: 1   MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNITIRKSSTASGVLASLQPPDVPRLA 60

Query: 61  ETARISLNPSEVEEFAPKIRQVVDWFGQLQAVDLQSIEPSIRADTEGGNQRDDVSETFEN 120
           +TARISL P++VEEFAPKI QVVDWFGQLQ VDLQSIEPSIRADTEGGNQR+DV ETFEN
Sbjct: 61  QTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVPETFEN 120

Query: 121 REAMIGAVPVFDEPYIRVPKVLNKE 145
           REAMIGAVPVFDEPYI+VPKVLNKE
Sbjct: 121 REAMIGAVPVFDEPYIKVPKVLNKE 145

[Close]

BLAST of Cp4.1LG02g03710 vs. ExPASy TrEMBL
Match: A0A1S3CQE8 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cucumis melo OX=3656 GN=LOC103503618 PE=3 SV=1)

HSP 1 Score: 234 bits (596), Expect = 7.23e-77
Identity = 122/145 (84.14%), Postives = 130/145 (89.66%), Query Frame = 0


Query: 1   MASGALRLLKGASSLPSLNPQIFISTSLNSLPVSNIRIRKCSTAPGIRASLQPPDVPRLA 60
           M S AL LLKGASS PSL  QIFIST+ +SLPVSNI IRK STA G+ ASLQPPDVPRLA
Sbjct: 1   MGSKALPLLKGASSFPSLKRQIFISTAFHSLPVSNITIRKSSTASGVLASLQPPDVPRLA 60

Query: 61  ETARISLNPSEVEEFAPKIRQVVDWFGQLQAVDLQSIEPSIRADTEGGNQRDDVSETFEN 120
           +TARISL P++VEEFAPKI QVVDWFGQLQ VDLQSIEPSIRADTEGGNQR+DV ETFEN
Sbjct: 61  QTARISLTPTQVEEFAPKITQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDVPETFEN 120

Query: 121 REAMIGAVPVFDEPYIRVPKVLNKE 145
           REAMIGAVPVFDEPYI+VPKVLNKE
Sbjct: 121 REAMIGAVPVFDEPYIKVPKVLNKE 145

[Close]

BLAST of Cp4.1LG02g03710 vs. ExPASy TrEMBL
Match: A0A6J1CQ90 (Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Momordica charantia OX=3673 GN=LOC111013151 PE=3 SV=1)

HSP 1 Score: 231 bits (589), Expect = 9.02e-76
Identity = 122/147 (82.99%), Postives = 130/147 (88.44%), Query Frame = 0


Query: 1   MASGALRLLKGASSLPSLNPQIFISTSL--NSLPVSNIRIRKCSTAPGIRASLQPPDVPR 60
           M S AL LLKGA SLPSL  QIFI      ++LP+S+ +IRKCST P IRASLQPPDVPR
Sbjct: 1   MGSKALPLLKGALSLPSLQRQIFIYNGFQFHTLPISSNKIRKCSTTPRIRASLQPPDVPR 60

Query: 61  LAETARISLNPSEVEEFAPKIRQVVDWFGQLQAVDLQSIEPSIRADTEGGNQRDDVSETF 120
           LAETARISL P+EVEEFAPKIRQVVDWFGQLQ VDLQSIEPSIRADTEGGNQR+D+SETF
Sbjct: 61  LAETARISLTPTEVEEFAPKIRQVVDWFGQLQTVDLQSIEPSIRADTEGGNQRNDISETF 120

Query: 121 ENREAMIGAVPVFDEPYIRVPKVLNKE 145
           ENREAMIGAVPVFDEPYIRVPKVLNKE
Sbjct: 121 ENREAMIGAVPVFDEPYIRVPKVLNKE 147

[Close]

BLAST of Cp4.1LG02g03710 vs. TAIR 10
Match: AT4G32915.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of translational fidelity; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glu-tRNAGln amidotransferase, C subunit (InterPro:IPR003837); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 134.4 bits (337), Expect = 7.2e-32
Identity = 61/111 (54.95%), Postives = 87/111 (78.38%), Query Frame = 0


Query: 35  NIRIRKCSTAPGIRASLQPPDVPRLAETARISLNPSEVEEFAPKIRQVVDWFGQLQAVDL 94
           N RI +  ++    + LQPPDV RLA+TARISL P+E+EE   KIR+V+DWFGQLQ VD+
Sbjct: 45  NHRIARSYSSDSDSSVLQPPDVARLAQTARISLTPAEIEECETKIRRVIDWFGQLQQVDV 104

Query: 95  QSIEPSIRADTEGGNQRDDVSETFENREAMIGAVPVFDEPYIRVPKVLNKE 146
            S+EP+IRA+ +GGN R+D  ETF+NR+++  ++P F++ Y++VPK+LNKE
Sbjct: 105 NSVEPAIRAEMDGGNLREDAPETFDNRDSIRASIPSFEDAYLKVPKILNKE 155

The following BLAST results are available for this feature:

BLAST of Cp4.1LG02g03710 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
D7STK2	1.4e-40	62.07	Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Vi...	[more]
B9RRX2	5.0e-38	63.01	Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Ri...	[more]
B9INH0	1.2e-34	57.93	Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Po...	[more]
A2XK57	3.7e-33	70.10	Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Or...	[more]
Q7XZZ1	3.7e-33	70.10	Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Or...	[more]

BLAST of Cp4.1LG02g03710 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023521629.1	7.56e-95	100.00	glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucu...	[more]
XP_022941306.1	5.11e-93	97.93	glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucu...	[more]
XP_022981070.1	2.43e-91	95.86	glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial-like ...	[more]
XP_008466091.1	1.49e-76	84.14	PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochon...	[more]
KAG7031739.1	1.68e-76	81.76	Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Cucu...	[more]

BLAST of Cp4.1LG02g03710 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FM33	2.47e-93	97.93	Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cu...	[more]
A0A6J1IVG1	1.18e-91	95.86	Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cu...	[more]
A0A5A7T6R5	7.23e-77	84.14	Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cu...	[more]
A0A1S3CQE8	7.23e-77	84.14	Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Cu...	[more]
A0A6J1CQ90	9.02e-76	82.99	Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Mo...	[more]

BLAST of Cp4.1LG02g03710 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G32915.1	7.2e-32	54.95	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of translation...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003837	Glu-tRNAGln amidotransferase C subunit	PFAM	PF02686	Glu-tRNAGln	coord: 67..138 e-value: 8.4E-10 score: 38.8
IPR003837	Glu-tRNAGln amidotransferase C subunit	TIGRFAM	TIGR00135	TIGR00135	coord: 55..142 e-value: 9.7E-15 score: 52.7
IPR003837	Glu-tRNAGln amidotransferase C subunit	PANTHER	PTHR15004	UNCHARACTERIZED	coord: 30..145
IPR003837	Glu-tRNAGln amidotransferase C subunit	HAMAP	MF_00122	GatC	coord: 50..143 score: 18.465389
None	No IPR available	GENE3D	1.10.20.60		coord: 47..93 e-value: 1.1E-7 score: 33.7
IPR036113	Glu-tRNAGln amidotransferase superfamily, subunit C	SUPERFAMILY	141000	Glu-tRNAGln amidotransferase C subunit	coord: 51..141

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG02g03710.1	Cp4.1LG02g03710.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0070681	glutaminyl-tRNAGln biosynthesis via transamidation
biological_process	GO:0032543	mitochondrial translation
biological_process	GO:0006450	regulation of translational fidelity
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0030956	glutamyl-tRNA(Gln) amidotransferase complex
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0050567	glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity
molecular_function	GO:0016740	transferase activity