Cp4.1LG01g00230 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview


Name	Cp4.1LG01g00230
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
Description	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
Location	Cp4.1LG01: 3775809 .. 3779109 (+)
RNA-Seq Expression	Cp4.1LG01g00230
Synteny	Cp4.1LG01g00230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAATGGTGTTGGTATCGACCAATGCAAACAACTTACTCTCAAAGCTAGCCAAAGGCAACGGCCACGGCGAGGATTCTCCTTATTTCGACGGCTGGAAGGCCTACGACACTGNCCAACACAAGTCAACCACACAACCCACCTCCACTCACCTCTTCGCTTGCCCTTTCCATGGCTGTCCCCTTCCCCGTCTTCGCTTCTGCCACCACCGCCACAACCTCCCACCAATCACTTTCTCTTTCCGTCTACCCCCGTTCCTTCCCCAGAACAAATTTCAATGTTGTTTCCTCCTCCTCTTCGCGCCCTTCCATCCGTGTGAATTCTGCCGCTTCTCCCTCTGTGGAGGCGGCCACCGCCGTCGACTCTGATCGGGCTGCCGCATCAGATTCTCGGTCTAAAGCCTTGCCGTTTCGGATTGGACATGGGTTCGATCTCCATAGGTTGGAGCCTGGGTATCCTTTGATTATTGGGGGAATTAATATTCCCCATGACAGAGGCTGCGAGGCTCATTCCGATGGTAATTTCTTTGCTTCTAGTTTGTTTTCCTGTTTCTGTGTTCTTGTTGGTTGCTGTTCTGCTGAAGAATTAGGGAATCTTCTTACGAACTTAATTGTTTGTATTCTAATTCTTTAAATAATTGGCTCAATTTTGTTGGTTTCATTCATTTCTTGATTGCAGCAATGACGAATTCTAAATTTCTACATGGAATGAGGGAATTTTATATTTACAAACTTTTAAATTTTGAAGTGGTTCTTTGTTTTGTTGATTTAGGGGATGTTCTACTTCACTGTGTGGTTGATGCAATTTTGGGTGCTTTGGGGCTTCCTGATATTGGACAAATCTTTCCAGATTCAGATCCCAAATGGAAGGGTGCCCCTTCATCTGTTTTCATTAAAGAAGCTGTAAGTAGTTCTGGCATACCAAATTCAAACTCACTGCCAAGTTTTGTTATCCTCTTTGCCTTGATTAATTTAAAATGATCTTAGGATTCTCTGGTTGCTTCGCTTTCATACTTGATATTATGATACCTTTATGTTTGCTTGAAGTTCACTTTAGGGGGACTAGTATGACCAATTATGAGAGGATGAAAAGTATAAGAAAGTAGAGCTTTTATTTGAGGTTGTAGGGAAAAATGAATGACTTTTAGAGAATATTAATGAATTTCTTCGTTAAAAGAAAGAAAAATTGATGTGAATGTTGTTGGAAGATAGGCTTTGTGAGATCCCACGTCGGTTGGGAAGGAGAACGAAACATTCTTTATAAGGGTGTGGAAACCTCTCCCTAACATACGTGTTTTAAAAACCTTGAGGAGAATCCCAAAGGAGAAGGCCCAAAGAGAACAATATCTGCTAGCGGTGGGTTTGCACCGTTACAAATGGTATTAGAGCCAGACACCGGGTGATGTGCTAGTGGAAGGCTGAGTCCCGAAGGAGGGTGGACATGAGGCTGTGTGCCAGCGAGGAGCTGGGCCCCAAAAGAGGGTGGATTGTGAGATCTCACATTGGTTGGGAGGAGAACGAAACATTCTTTATAAGAGTGTGGAAACCTCTCCCTAGCAGACGTGTTTTAAAAACCTTGAGGAGAAGCTCGAAAGGGAAAACCCAAAAAGGACAATATCTACTAGCAGTGGGCTTGGGCCGTTACGGGCTTGAGGTGTTTAGGCACATGCCTCAAGCATACTTCATTAAGGGATCCTCACTTCAAAAGCGAGGGGCAGAGAAAGGAAGTTCTACACAAACAGGGGAGCCTACCTTAAGGTGTTTAGGCACATGCCTCAAGCATACTTCATTAAGGGATCCTCACTTCAAAAGCGAGGGGCAGAGAAAGGAAGTTCTACACAAACAGGGGAGCCTACCTTAAGGTGTTTAGGCACATGCCTCAAGCATACTTCATTAAGGGATCCTCACTTCAAAAGCGAGGGGCAGAGAAAGGAAGTTCTACACAAACAGGGGAGCCTACCTTAAGGTGTTTAGGCACATGCCTCAAGCATACTTCATTAAGGGATCCTCACTTCAAAAGCGAGGGGCAGAGAAAGGAAGTTCTACACAAACAGGGGAGCCTAAGAAATTCTTCAAAACCAAAAGGAAGTGCGGAAGGATTTTCCGATTCACATTTGTATCAAAAGAGAAGAAAAGCTGCAAATCTTATAACCTTGGATTTCTCGTTTACTTCCCCCTCCGAAAAATACCATATGTTTCTGTAGTAGGGTCATGTAGTTGTCTGTCTTGTGTGAAATATTTTGGTGCACATAAGCTAGCTTGGACACTCCTAGATAAAAGATCTAGGTGCACGTAAGCTACCTTGGACACTCATAGATAAAAGATCTACGTGCACGTAAGCTAGCTTGGACACTCGCAGATAAAGAAAAGAATGGTGAGGTAAACATCCCTAATGAGTCTCTGGGAAAGGTAATCAATAATGAGAGACCTTTGTTCACCTGCTCTGTAGTTCTTCAATCTTTGTTAAACTATTGATTCATGTGTGCTTAAATATCATCCCAAAGTGAACACATAGAACATTGTAGGGGTACAAAATTTTAGACTTTCTCCTCTAATCTCGTATGAGCATATTAAAACACCATGGAATTTGAGGCCGATGAATCCATCTAGTAAACGGAAGTCGAAGTAAATAGTTTGAATTCGGTCTATTTTAGACTAAATAATGTTCCATTTTGTGATTGATGAGGATGTTTGGTGTTAATTTTGGGTGATATTCCAGGTGAGACTGATGCACGAGGCAGGTTATGAGATAGGAAACTTGGATGCCACATTGATACTCCAAAGACCAAAGCTTAGCCCTCACAAGGAAGCTATCCGAGCAAACCTCTCCGATCTTCTGGGAGCCGACCAATCTGTCGTGAATCTGAAGGCAAAAACACACGAGAAGGTCGACAGCCTCGGCGAAAACCGAAGCATTGCTGCCCATACGGTGGTCCTCCTAATGAGGAGATAGAACCCCTACCATTACTGCTGCTGCTGCTTTGTTAGTGTAATAGCAACAACACTGCTCCATTTCAAGTGGAATTTGCTTTAGTGTCAATACTTTGAATCTCCCCTCCCTTCCACAGTTAAACGTTTTAATCATTCAACAACGTTAAAATGAAAATGATATGGTGAAGAACATTAGAAATTGGCTACAATTATTATTATTTATTTTTTTTTTTTTCTTCTTGTTCTTGGTGTGTGAAAGATGTAAAGATGAGGTGGAAATTACTCTTCCATTTTGTCTAAAGCCAGTAATCATTAATTATATCTGAGTCGAATTTTGTAAAATTGGACCATATTTAATGTCCAATTGGACCAT

mRNA sequence

AAAATGGTGTTGGTATCGACCAATGCAAACAACTTACTCTCAAAGCTAGCCAAAGGCAACGGCCACGGCGAGGATTCTCCTTATTTCGACGGCTGGAAGGCCTACGACACTGNCCAACACAAGTCAACCACACAACCCACCTCCACTCACCTCTTCGCTTGCCCTTTCCATGGCTGTCCCCTTCCCCGTCTTCGCTTCTGCCACCACCGCCACAACCTCCCACCAATCACTTTCTCTTTCCGTCTACCCCCGTTCCTTCCCCAGAACAAATTTCAATGTTGTTTCCTCCTCCTCTTCGCGCCCTTCCATCCGTGTGAATTCTGCCGCTTCTCCCTCTGTGGAGGCGGCCACCGCCGTCGACTCTGATCGGGCTGCCGCATCAGATTCTCGGTCTAAAGCCTTGCCGTTTCGGATTGGACATGGGTTCGATCTCCATAGGTTGGAGCCTGGGTATCCTTTGATTATTGGGGGAATTAATATTCCCCATGACAGAGGCTGCGAGGCTCATTCCGATGGGGATGTTCTACTTCACTGTGTGGTTGATGCAATTTTGGGTGCTTTGGGGCTTCCTGATATTGGACAAATCTTTCCAGATTCAGATCCCAAATGGAAGGGTGCCCCTTCATCTGTTTTCATTAAAGAAGCTGTGAGACTGATGCACGAGGCAGGTTATGAGATAGGAAACTTGGATGCCACATTGATACTCCAAAGACCAAAGCTTAGCCCTCACAAGGAAGCTATCCGAGCAAACCTCTCCGATCTTCTGGGAGCCGACCAATCTGTCGTGAATCTGAAGGCAAAAACACACGAGAAGGTCGACAGCCTCGGCGAAAACCGAAGCATTGCTGCCCATACGGTGGTCCTCCTAATGAGGAGATAGAACCCCTACCATTACTGCTGCTGCTGCTTTGTTAGTGTAATAGCAACAACACTGCTCCATTTCAAGTGGAATTTGCTTTAGTGTCAATACTTTGAATCTCCCCTCCCTTCCACAGTTAAACGTTTTAATCATTCAACAACGTTAAAATGAAAATGATATGGTGAAGAACATTAGAAATTGGCTACAATTATTATTATTTATTTTTTTTTTTTTCTTCTTGTTCTTGGTGTGTGAAAGATGTAAAGATGAGGTGGAAATTACTCTTCCATTTTGTCTAAAGCCAGTAATCATTAATTATATCTGAGTCGAATTTTGTAAAATTGGACCATATTTAATGTCCAATTGGACCAT

Coding sequence (CDS)

ATGGCTGTCCCCTTCCCCGTCTTCGCTTCTGCCACCACCGCCACAACCTCCCACCAATCACTTTCTCTTTCCGTCTACCCCCGTTCCTTCCCCAGAACAAATTTCAATGTTGTTTCCTCCTCCTCTTCGCGCCCTTCCATCCGTGTGAATTCTGCCGCTTCTCCCTCTGTGGAGGCGGCCACCGCCGTCGACTCTGATCGGGCTGCCGCATCAGATTCTCGGTCTAAAGCCTTGCCGTTTCGGATTGGACATGGGTTCGATCTCCATAGGTTGGAGCCTGGGTATCCTTTGATTATTGGGGGAATTAATATTCCCCATGACAGAGGCTGCGAGGCTCATTCCGATGGGGATGTTCTACTTCACTGTGTGGTTGATGCAATTTTGGGTGCTTTGGGGCTTCCTGATATTGGACAAATCTTTCCAGATTCAGATCCCAAATGGAAGGGTGCCCCTTCATCTGTTTTCATTAAAGAAGCTGTGAGACTGATGCACGAGGCAGGTTATGAGATAGGAAACTTGGATGCCACATTGATACTCCAAAGACCAAAGCTTAGCCCTCACAAGGAAGCTATCCGAGCAAACCTCTCCGATCTTCTGGGAGCCGACCAATCTGTCGTGAATCTGAAGGCAAAAACACACGAGAAGGTCGACAGCCTCGGCGAAAACCGAAGCATTGCTGCCCATACGGTGGTCCTCCTAATGAGGAGATAG

Protein sequence

MAVPFPVFASATTATTSHQSLSLSVYPRSFPRTNFNVVSSSSSRPSIRVNSAASPSVEAATAVDSDRAAASDSRSKALPFRIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATLILQRPKLSPHKEAIRANLSDLLGADQSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR

Homology

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BLAST of Cp4.1LG01g00230 vs. ExPASy Swiss-Prot
Match: Q9CAK8 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ISPF PE=1 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 8.1e-86
Identity = 161/197 (81.73%), Postives = 173/197 (87.82%), Query Frame = 0


Query: 40  SSSSRPSIRVNSAASPSVEAATAVDSDRAAASDSRSKALPFRIGHGFDLHRLEPGYPLII 99
           S S RPS  V++A+S       AVD + +  S+  +K LPFRIGHGFDLHRLEPGYPLII
Sbjct: 42  SLSCRPSASVSAASS-------AVDVNESVTSEKPTKTLPFRIGHGFDLHRLEPGYPLII 101

Query: 100 GGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEA 159
           GGI IPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGA SSVFIKEA
Sbjct: 102 GGIVIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEA 161

Query: 160 VRLMHEAGYEIGNLDATLILQRPKLSPHKEAIRANLSDLLGADQSVVNLKAKTHEKVDSL 219
           VRLM EAGYEIGNLDATLILQRPK+SPHKE IR+NLS LLGAD SVVNLKAKTHEKVDSL
Sbjct: 162 VRLMDEAGYEIGNLDATLILQRPKISPHKETIRSNLSKLLGADPSVVNLKAKTHEKVDSL 221

Query: 220 GENRSIAAHTVVLLMRR 237
           GENRSIAAHTV+LLM++
Sbjct: 222 GENRSIAAHTVILLMKK 231

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BLAST of Cp4.1LG01g00230 vs. ExPASy Swiss-Prot
Match: Q6EPN6 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=ISPF PE=1 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 1.3e-83
Identity = 156/200 (78.00%), Postives = 176/200 (88.00%), Query Frame = 0


Query: 39  SSSSSRPSIRVNSAASPSVEAATAVDSDR--AAASDSRSKALPFRIGHGFDLHRLEPGYP 98
           S+S +RPS+R+     PS  AA AV ++   A A+  +  ALPFR+GHGFDLHRLEPG P
Sbjct: 26  SASPARPSLRLR---RPSTLAAAAVQAEHQPAVAAAPKPPALPFRVGHGFDLHRLEPGLP 85

Query: 99  LIIGGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFI 158
           LIIGGI+IPHDRGC+AHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDP+WKGA SSVF+
Sbjct: 86  LIIGGIDIPHDRGCDAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPRWKGADSSVFM 145

Query: 159 KEAVRLMHEAGYEIGNLDATLILQRPKLSPHKEAIRANLSDLLGADQSVVNLKAKTHEKV 218
           +EAV+LMHEAGYE+GNLDATLILQ+PK+SP KE IR+NL DLLGAD SVVNLKAKTHEKV
Sbjct: 146 REAVKLMHEAGYELGNLDATLILQKPKISPFKETIRSNLCDLLGADPSVVNLKAKTHEKV 205

Query: 219 DSLGENRSIAAHTVVLLMRR 237
           DSLGENRSIAAHTVVLLMR+
Sbjct: 206 DSLGENRSIAAHTVVLLMRK 222

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BLAST of Cp4.1LG01g00230 vs. ExPASy Swiss-Prot
Match: Q9M4W3 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Catharanthus roseus OX=4058 GN=ISPF PE=2 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 6.4e-83
Identity = 165/233 (70.82%), Postives = 188/233 (80.69%), Query Frame = 0


Query: 14  ATTSHQSLSLSVYPRSFPRTNF--NVVSSSSSRPS-IRVNSAASPSVE-------AATAV 73
           AT+ + S ++     +  R NF  + V  S + PS IR+++  S ++        +  AV
Sbjct: 4   ATSFYCSTAIPSKKTNQNRENFLCSPVGGSKTTPSYIRLSTRQSRTLSLVVSAAASGAAV 63

Query: 74  DSDRAAASDSRSKALPFRIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLLHCV 133
           +++   A+ + SK L FR+GHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLLHCV
Sbjct: 64  EAEPKFAAVTPSKILSFRVGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLLHCV 123

Query: 134 VDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATLILQRPK 193
           VDAILGALGLPDIGQIFPD+DPKWKGAPSSVFIKEAVRLM EAGYE+GNLDATLILQRPK
Sbjct: 124 VDAILGALGLPDIGQIFPDTDPKWKGAPSSVFIKEAVRLMDEAGYELGNLDATLILQRPK 183

Query: 194 LSPHKEAIRANLSDLLGADQSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 237
           +SPHKEAIR NL  LLGAD  VVNLKAKTHEKVDSLGENRSIAAHTVVLLMR+
Sbjct: 184 VSPHKEAIRQNLCQLLGADPCVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRK 236

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BLAST of Cp4.1LG01g00230 vs. ExPASy Swiss-Prot
Match: Q1LLZ4 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cupriavidus metallidurans (strain ATCC 43123 / DSM 2839 / NBRC 102507 / CH34) OX=266264 GN=ispF PE=3 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.3e-43
Identity = 85/156 (54.49%), Postives = 110/156 (70.51%), Query Frame = 0


Query: 81  RIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIF 140
           RIG G+D+H L PG  LI+GG++IPHDRG   HSD D LLH V DA+ GA  L DIG+ F
Sbjct: 7   RIGQGYDVHALVPGRKLILGGVDIPHDRGLLGHSDADALLHAVTDALFGAAALGDIGRHF 66

Query: 141 PDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATLILQRPKLSPHKEAIRANLSDLLG 200
           PD+DP + GA S V ++EAVR + EAGYEIGN+DAT+I Q+PKL+PH   + ANL++ LG
Sbjct: 67  PDTDPNFAGADSRVLLREAVRRVREAGYEIGNVDATVIAQKPKLAPHISGMVANLAEDLG 126

Query: 201 ADQSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 237
              +  N+KAKT+EK+   G+   I A   VL+ RR
Sbjct: 127 LPVTRCNVKAKTNEKLGFEGKEEGIVAQAAVLIYRR 162

[Close]

BLAST of Cp4.1LG01g00230 vs. ExPASy Swiss-Prot
Match: B8GQ78 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Thioalkalivibrio sulfidiphilus (strain HL-EbGR7) OX=396588 GN=ispF PE=3 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.7e-43
Identity = 80/153 (52.29%), Postives = 108/153 (70.59%), Query Frame = 0


Query: 81  RIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIF 140
           RIGHG+D+H  + G  +++GG+ IPH +   AHSDGDVL+H + DA+LGA  L DIG+ F
Sbjct: 5   RIGHGYDVHAFKAGGHVVLGGVRIPHAKAFAAHSDGDVLIHALCDALLGAAALGDIGRHF 64

Query: 141 PDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATLILQRPKLSPHKEAIRANLSDLLG 200
           PD+DP +KGA S V ++  V L+HE GY +GN+DAT+I Q PK++PH EA+RANL+D LG
Sbjct: 65  PDTDPAYKGADSRVLLRRVVELLHEQGYRVGNVDATIIAQAPKMAPHIEAMRANLADDLG 124

Query: 201 ADQSVVNLKAKTHEKVDSLGENRSIAAHTVVLL 234
                VN+KA T E++   G    IAAH V L+
Sbjct: 125 VALECVNVKATTTERLGFAGREEGIAAHAVALI 157

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BLAST of Cp4.1LG01g00230 vs. NCBI nr
Match: XP_022942995.1 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [Cucurbita moschata] >XP_023548808.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 457 bits (1175), Expect = 7.91e-162
Identity = 236/236 (100.00%), Postives = 236/236 (100.00%), Query Frame = 0


Query: 1   MAVPFPVFASATTATTSHQSLSLSVYPRSFPRTNFNVVSSSSSRPSIRVNSAASPSVEAA 60
           MAVPFPVFASATTATTSHQSLSLSVYPRSFPRTNFNVVSSSSSRPSIRVNSAASPSVEAA
Sbjct: 1   MAVPFPVFASATTATTSHQSLSLSVYPRSFPRTNFNVVSSSSSRPSIRVNSAASPSVEAA 60

Query: 61  TAVDSDRAAASDSRSKALPFRIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLL 120
           TAVDSDRAAASDSRSKALPFRIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLL
Sbjct: 61  TAVDSDRAAASDSRSKALPFRIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLL 120

Query: 121 HCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATLILQ 180
           HCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATLILQ
Sbjct: 121 HCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATLILQ 180

Query: 181 RPKLSPHKEAIRANLSDLLGADQSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 236
           RPKLSPHKEAIRANLSDLLGADQSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR
Sbjct: 181 RPKLSPHKEAIRANLSDLLGADQSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 236

[Close]

BLAST of Cp4.1LG01g00230 vs. NCBI nr
Match: XP_023548820.1 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 453 bits (1166), Expect = 1.86e-160
Identity = 234/236 (99.15%), Postives = 235/236 (99.58%), Query Frame = 0


Query: 1   MAVPFPVFASATTATTSHQSLSLSVYPRSFPRTNFNVVSSSSSRPSIRVNSAASPSVEAA 60
           MAVPFPVFASATTATTSHQSLSLSVYPRSFPRTNFNVVSSSSSRPSIRVNSAASPSVEAA
Sbjct: 1   MAVPFPVFASATTATTSHQSLSLSVYPRSFPRTNFNVVSSSSSRPSIRVNSAASPSVEAA 60

Query: 61  TAVDSDRAAASDSRSKALPFRIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLL 120
           TAVDSDRAAASDSRSKALPFRIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLL
Sbjct: 61  TAVDSDRAAASDSRSKALPFRIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLL 120

Query: 121 HCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATLILQ 180
           HCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMH+AGYEIGNLDATLILQ
Sbjct: 121 HCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHDAGYEIGNLDATLILQ 180

Query: 181 RPKLSPHKEAIRANLSDLLGADQSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 236
           RPKLSPHKEAIRANLSDLLGAD SVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR
Sbjct: 181 RPKLSPHKEAIRANLSDLLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 236

[Close]

BLAST of Cp4.1LG01g00230 vs. NCBI nr
Match: XP_022982530.1 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [Cucurbita maxima])

HSP 1 Score: 453 bits (1166), Expect = 1.86e-160
Identity = 233/236 (98.73%), Postives = 236/236 (100.00%), Query Frame = 0


Query: 1   MAVPFPVFASATTATTSHQSLSLSVYPRSFPRTNFNVVSSSSSRPSIRVNSAASPSVEAA 60
           MAVPFP+FASATTATTSHQSLSLSVYPRSFPRTNFNVVSSSSSRPSIRVNSAASPSV+AA
Sbjct: 1   MAVPFPIFASATTATTSHQSLSLSVYPRSFPRTNFNVVSSSSSRPSIRVNSAASPSVDAA 60

Query: 61  TAVDSDRAAASDSRSKALPFRIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLL 120
           TAVDSDRAAASDSRSKALPFRIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLL
Sbjct: 61  TAVDSDRAAASDSRSKALPFRIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLL 120

Query: 121 HCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATLILQ 180
           HCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATLILQ
Sbjct: 121 HCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATLILQ 180

Query: 181 RPKLSPHKEAIRANLSDLLGADQSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 236
           RPKLSPHKEAIRANLS+LLGADQSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR
Sbjct: 181 RPKLSPHKEAIRANLSNLLGADQSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 236

[Close]

BLAST of Cp4.1LG01g00230 vs. NCBI nr
Match: KAG6600551.1 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031190.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 452 bits (1164), Expect = 3.76e-160
Identity = 234/236 (99.15%), Postives = 235/236 (99.58%), Query Frame = 0


Query: 1   MAVPFPVFASATTATTSHQSLSLSVYPRSFPRTNFNVVSSSSSRPSIRVNSAASPSVEAA 60
           MAVPFPVFASATTATTSHQSLSLSVYPRSFPRTNFNVVSSSSSRPSIRVNSAASPSVEAA
Sbjct: 1   MAVPFPVFASATTATTSHQSLSLSVYPRSFPRTNFNVVSSSSSRPSIRVNSAASPSVEAA 60

Query: 61  TAVDSDRAAASDSRSKALPFRIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLL 120
           TAVDSDRAAASDSRSKALPFRIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLL
Sbjct: 61  TAVDSDRAAASDSRSKALPFRIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLL 120

Query: 121 HCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATLILQ 180
           HCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATLILQ
Sbjct: 121 HCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATLILQ 180

Query: 181 RPKLSPHKEAIRANLSDLLGADQSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 236
           RPKLSPHKEAIRANLS+LLGAD SVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR
Sbjct: 181 RPKLSPHKEAIRANLSNLLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 236

[Close]

BLAST of Cp4.1LG01g00230 vs. NCBI nr
Match: XP_022136770.1 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [Momordica charantia])

HSP 1 Score: 382 bits (981), Expect = 2.81e-132
Identity = 203/238 (85.29%), Postives = 214/238 (89.92%), Query Frame = 0


Query: 1   MAVPFPVFASATTA--TTSHQSLSLSVYPRSFPRTNFNVVSSSSSRPSIRVNSAASPSVE 60
           MAVP P FAS  TA  T SHQSLSLS++PR+FPR  F  +SSSSS P+IRV SAA+   E
Sbjct: 1   MAVPAPFFASPATAAATPSHQSLSLSMFPRTFPRRKF-ALSSSSSPPAIRVTSAAA--AE 60

Query: 61  AATAVDSDRAAASDSRSKALPFRIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDV 120
             TA+ S  AAASDSRSKALPFR+GHGFDLHRLEPGYPLIIGGINIPH+RGCEAHSDGDV
Sbjct: 61  PTTALQSGPAAASDSRSKALPFRVGHGFDLHRLEPGYPLIIGGINIPHERGCEAHSDGDV 120

Query: 121 LLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATLI 180
           LLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGY+IGNLDATLI
Sbjct: 121 LLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYDIGNLDATLI 180

Query: 181 LQRPKLSPHKEAIRANLSDLLGADQSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 236
           LQRPKLSPHKEAIR NLS+LLGAD  VVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR
Sbjct: 181 LQRPKLSPHKEAIRTNLSELLGADPCVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 235

[Close]

BLAST of Cp4.1LG01g00230 vs. ExPASy TrEMBL
Match: A0A6J1FX89 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cucurbita moschata OX=3662 GN=LOC111447862 PE=3 SV=1)

HSP 1 Score: 457 bits (1175), Expect = 3.83e-162
Identity = 236/236 (100.00%), Postives = 236/236 (100.00%), Query Frame = 0


Query: 1   MAVPFPVFASATTATTSHQSLSLSVYPRSFPRTNFNVVSSSSSRPSIRVNSAASPSVEAA 60
           MAVPFPVFASATTATTSHQSLSLSVYPRSFPRTNFNVVSSSSSRPSIRVNSAASPSVEAA
Sbjct: 1   MAVPFPVFASATTATTSHQSLSLSVYPRSFPRTNFNVVSSSSSRPSIRVNSAASPSVEAA 60

Query: 61  TAVDSDRAAASDSRSKALPFRIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLL 120
           TAVDSDRAAASDSRSKALPFRIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLL
Sbjct: 61  TAVDSDRAAASDSRSKALPFRIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLL 120

Query: 121 HCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATLILQ 180
           HCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATLILQ
Sbjct: 121 HCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATLILQ 180

Query: 181 RPKLSPHKEAIRANLSDLLGADQSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 236
           RPKLSPHKEAIRANLSDLLGADQSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR
Sbjct: 181 RPKLSPHKEAIRANLSDLLGADQSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 236

[Close]

BLAST of Cp4.1LG01g00230 vs. ExPASy TrEMBL
Match: A0A6J1J2X8 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cucurbita maxima OX=3661 GN=LOC111481338 PE=3 SV=1)

HSP 1 Score: 453 bits (1166), Expect = 9.02e-161
Identity = 233/236 (98.73%), Postives = 236/236 (100.00%), Query Frame = 0


Query: 1   MAVPFPVFASATTATTSHQSLSLSVYPRSFPRTNFNVVSSSSSRPSIRVNSAASPSVEAA 60
           MAVPFP+FASATTATTSHQSLSLSVYPRSFPRTNFNVVSSSSSRPSIRVNSAASPSV+AA
Sbjct: 1   MAVPFPIFASATTATTSHQSLSLSVYPRSFPRTNFNVVSSSSSRPSIRVNSAASPSVDAA 60

Query: 61  TAVDSDRAAASDSRSKALPFRIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLL 120
           TAVDSDRAAASDSRSKALPFRIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLL
Sbjct: 61  TAVDSDRAAASDSRSKALPFRIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLL 120

Query: 121 HCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATLILQ 180
           HCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATLILQ
Sbjct: 121 HCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATLILQ 180

Query: 181 RPKLSPHKEAIRANLSDLLGADQSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 236
           RPKLSPHKEAIRANLS+LLGADQSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR
Sbjct: 181 RPKLSPHKEAIRANLSNLLGADQSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 236

[Close]

BLAST of Cp4.1LG01g00230 vs. ExPASy TrEMBL
Match: A0A6J1C4W9 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Momordica charantia OX=3673 GN=LOC111008394 PE=3 SV=1)

HSP 1 Score: 382 bits (981), Expect = 1.36e-132
Identity = 203/238 (85.29%), Postives = 214/238 (89.92%), Query Frame = 0


Query: 1   MAVPFPVFASATTA--TTSHQSLSLSVYPRSFPRTNFNVVSSSSSRPSIRVNSAASPSVE 60
           MAVP P FAS  TA  T SHQSLSLS++PR+FPR  F  +SSSSS P+IRV SAA+   E
Sbjct: 1   MAVPAPFFASPATAAATPSHQSLSLSMFPRTFPRRKF-ALSSSSSPPAIRVTSAAA--AE 60

Query: 61  AATAVDSDRAAASDSRSKALPFRIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDV 120
             TA+ S  AAASDSRSKALPFR+GHGFDLHRLEPGYPLIIGGINIPH+RGCEAHSDGDV
Sbjct: 61  PTTALQSGPAAASDSRSKALPFRVGHGFDLHRLEPGYPLIIGGINIPHERGCEAHSDGDV 120

Query: 121 LLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATLI 180
           LLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGY+IGNLDATLI
Sbjct: 121 LLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYDIGNLDATLI 180

Query: 181 LQRPKLSPHKEAIRANLSDLLGADQSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 236
           LQRPKLSPHKEAIR NLS+LLGAD  VVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR
Sbjct: 181 LQRPKLSPHKEAIRTNLSELLGADPCVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 235

[Close]

BLAST of Cp4.1LG01g00230 vs. ExPASy TrEMBL
Match: A0A5D3D287 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G004470 PE=3 SV=1)

HSP 1 Score: 381 bits (978), Expect = 3.26e-132
Identity = 200/236 (84.75%), Postives = 208/236 (88.14%), Query Frame = 0


Query: 1   MAVPFPVFASATTATTSHQSLSLSVYPRSFPRTNFNVVSSSSSRPSIRVNSAASPSVEAA 60
           MAV  P FAS   ATTSHQS SLS YP SFPR  F  +SSSSS PS RVNSA S SV + 
Sbjct: 1   MAVSAPFFASPPAATTSHQSPSLSFYPPSFPRRIFTPLSSSSSLPSFRVNSAVSHSVSST 60

Query: 61  TAVDSDRAAASDSRSKALPFRIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLL 120
           TA++SD      S SK LPFR+GHGFDLHRLEPGYPLIIGGI+IPHDRGCEAHSDGDVLL
Sbjct: 61  TAIESD------SPSKTLPFRVGHGFDLHRLEPGYPLIIGGISIPHDRGCEAHSDGDVLL 120

Query: 121 HCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATLILQ 180
           HCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGY+IGNLDATLILQ
Sbjct: 121 HCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYDIGNLDATLILQ 180

Query: 181 RPKLSPHKEAIRANLSDLLGADQSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 236
           RPKLSPHKEAIRANLS+LLGAD SVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR
Sbjct: 181 RPKLSPHKEAIRANLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 230

[Close]

BLAST of Cp4.1LG01g00230 vs. ExPASy TrEMBL
Match: A0A1S3BTZ8 (2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cucumis melo OX=3656 GN=LOC103493142 PE=3 SV=1)

HSP 1 Score: 381 bits (978), Expect = 3.26e-132
Identity = 200/236 (84.75%), Postives = 208/236 (88.14%), Query Frame = 0


Query: 1   MAVPFPVFASATTATTSHQSLSLSVYPRSFPRTNFNVVSSSSSRPSIRVNSAASPSVEAA 60
           MAV  P FAS   ATTSHQS SLS YP SFPR  F  +SSSSS PS RVNSA S SV + 
Sbjct: 1   MAVSAPFFASPPAATTSHQSPSLSFYPPSFPRRIFTPLSSSSSLPSFRVNSAVSHSVSST 60

Query: 61  TAVDSDRAAASDSRSKALPFRIGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLL 120
           TA++SD      S SK LPFR+GHGFDLHRLEPGYPLIIGGI+IPHDRGCEAHSDGDVLL
Sbjct: 61  TAIESD------SPSKTLPFRVGHGFDLHRLEPGYPLIIGGISIPHDRGCEAHSDGDVLL 120

Query: 121 HCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYEIGNLDATLILQ 180
           HCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGY+IGNLDATLILQ
Sbjct: 121 HCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYDIGNLDATLILQ 180

Query: 181 RPKLSPHKEAIRANLSDLLGADQSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 236
           RPKLSPHKEAIRANLS+LLGAD SVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR
Sbjct: 181 RPKLSPHKEAIRANLSELLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVVLLMRR 230

[Close]

BLAST of Cp4.1LG01g00230 vs. TAIR 10
Match: AT1G63970.1 (isoprenoid F )

HSP 1 Score: 318.2 bits (814), Expect = 5.7e-87
Identity = 161/197 (81.73%), Postives = 173/197 (87.82%), Query Frame = 0


Query: 40  SSSSRPSIRVNSAASPSVEAATAVDSDRAAASDSRSKALPFRIGHGFDLHRLEPGYPLII 99
           S S RPS  V++A+S       AVD + +  S+  +K LPFRIGHGFDLHRLEPGYPLII
Sbjct: 42  SLSCRPSASVSAASS-------AVDVNESVTSEKPTKTLPFRIGHGFDLHRLEPGYPLII 101

Query: 100 GGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEA 159
           GGI IPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGA SSVFIKEA
Sbjct: 102 GGIVIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEA 161

Query: 160 VRLMHEAGYEIGNLDATLILQRPKLSPHKEAIRANLSDLLGADQSVVNLKAKTHEKVDSL 219
           VRLM EAGYEIGNLDATLILQRPK+SPHKE IR+NLS LLGAD SVVNLKAKTHEKVDSL
Sbjct: 162 VRLMDEAGYEIGNLDATLILQRPKISPHKETIRSNLSKLLGADPSVVNLKAKTHEKVDSL 221

Query: 220 GENRSIAAHTVVLLMRR 237
           GENRSIAAHTV+LLM++
Sbjct: 222 GENRSIAAHTVILLMKK 231

[Close]

BLAST of Cp4.1LG01g00230 vs. TAIR 10
Match: AT1G63970.2 (isoprenoid F )

HSP 1 Score: 293.5 bits (750), Expect = 1.5e-79
Identity = 153/197 (77.66%), Postives = 165/197 (83.76%), Query Frame = 0


Query: 40  SSSSRPSIRVNSAASPSVEAATAVDSDRAAASDSRSKALPFRIGHGFDLHRLEPGYPLII 99
           S S RPS  V++A+S       AVD + +  S+  +K LPFRIGHGFDLHRLEPGYPLII
Sbjct: 42  SLSCRPSASVSAASS-------AVDVNESVTSEKPTKTLPFRIGHGFDLHRLEPGYPLII 101

Query: 100 GGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEA 159
           GGI IPHDRGCEAHSD        VDAILGALGLPDIGQIFPDSDPKWKGA SSVFIKEA
Sbjct: 102 GGIVIPHDRGCEAHSD--------VDAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEA 161

Query: 160 VRLMHEAGYEIGNLDATLILQRPKLSPHKEAIRANLSDLLGADQSVVNLKAKTHEKVDSL 219
           VRLM EAGYEIGNLDATLILQRPK+SPHKE IR+NLS LLGAD SVVNLKAKTHEKVDSL
Sbjct: 162 VRLMDEAGYEIGNLDATLILQRPKISPHKETIRSNLSKLLGADPSVVNLKAKTHEKVDSL 221

Query: 220 GENRSIAAHTVVLLMRR 237
           GENRSIAAHTV+LLM++
Sbjct: 222 GENRSIAAHTVILLMKK 223

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g00230 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CAK8	8.1e-86	81.73	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Arabidop...	[more]
Q6EPN6	1.3e-83	78.00	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Oryza sa...	[more]
Q9M4W3	6.4e-83	70.82	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic OS=Catharan...	[more]
Q1LLZ4	1.3e-43	54.49	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cupriavidus metallidura...	[more]
B8GQ78	1.7e-43	52.29	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Thioalkalivibrio sulfid...	[more]

BLAST of Cp4.1LG01g00230 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022942995.1	7.91e-162	100.00	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [Cucurbita ...	[more]
XP_023548820.1	1.86e-160	99.15	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic-like [Cucur...	[more]
XP_022982530.1	1.86e-160	98.73	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [Cucurbita ...	[more]
KAG6600551.1	3.76e-160	99.15	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic, partial [C...	[more]
XP_022136770.1	2.81e-132	85.29	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic [Momordica ...	[more]

BLAST of Cp4.1LG01g00230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FX89	3.83e-162	100.00	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cucurbita moschata OX=3...	[more]
A0A6J1J2X8	9.02e-161	98.73	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cucurbita maxima OX=366...	[more]
A0A6J1C4W9	1.36e-132	85.29	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Momordica charantia OX=...	[more]
A0A5D3D287	3.26e-132	84.75	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cucumis melo var. makuw...	[more]
A0A1S3BTZ8	3.26e-132	84.75	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Cucumis melo OX=3656 GN...	[more]

BLAST of Cp4.1LG01g00230 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G63970.1	5.7e-87	81.73	isoprenoid F	[more]
AT1G63970.2	1.5e-79	77.66	isoprenoid F	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036571	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily	GENE3D	3.30.1330.50		coord: 77..236 e-value: 1.0E-68 score: 232.3
IPR036571	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily	SUPERFAMILY	69765	IpsF-like	coord: 79..235
IPR003526	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	TIGRFAM	TIGR00151	TIGR00151	coord: 81..235 e-value: 2.1E-59 score: 198.0
IPR003526	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	PFAM	PF02542	YgbB	coord: 80..233 e-value: 6.2E-59 score: 198.7
IPR003526	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	PANTHER	PTHR43181	2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE, CHLOROPLASTIC	coord: 19..236
IPR003526	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	HAMAP	MF_00107	IspF	coord: 80..235 score: 33.20583
IPR003526	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	CDD	cd00554	MECDP_synthase	coord: 81..233 e-value: 1.25518E-89 score: 259.299
None	No IPR available	PANTHER	PTHR43181:SF2	2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE	coord: 19..236
IPR020555	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site	PROSITE	PS01350	ISPF	coord: 114..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g00230.1	Cp4.1LG01g00230.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016117	carotenoid biosynthetic process
biological_process	GO:0015995	chlorophyll biosynthetic process
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0016114	terpenoid biosynthetic process
molecular_function	GO:0008685	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
molecular_function	GO:0046872	metal ion binding