CsGy6G014045 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy6G014045
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionTropomyosin
LocationGy14Chr6: 12464099 .. 12464410 (+)
RNA-Seq ExpressionCsGy6G014045
SyntenyCsGy6G014045
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTCCTCATCAAAGATTTGTTTCTGTATTCCTCGCCACAAAAATGGCCACAAAGCTGATGGAGGATCGGAGAAATCTTCCAAATCTAAGCCTTCTCGTCGCAAATCTCATCGAGACTCAAAAGAAGGTAAGCATTCCTCTAGCAGTGATAGCAGTGGAAATGGAAACGCAGGTGAAGAATGTGCAGCCAGTGCCACTGCCGTGGCTGCTGTTGCGGTCACAGCCGTGACCATGGATGCACTTGACGATGATGGTGGCAGTACCCATGTCCACGGTGGTGAGGGAGGCAGCGGGGCTGGTGGAGACTAG

mRNA sequence

ATGGAGTCCTCATCAAAGATTTGTTTCTGTATTCCTCGCCACAAAAATGGCCACAAAGCTGATGGAGGATCGGAGAAATCTTCCAAATCTAAGCCTTCTCGTCGCAAATCTCATCGAGACTCAAAAGAAGGTAAGCATTCCTCTAGCAGTGATAGCAGTGGAAATGGAAACGCAGGTGAAGAATGTGCAGCCAGTGCCACTGCCGTGGCTGCTGTTGCGGTCACAGCCGTGACCATGGATGCACTTGACGATGATGGTGGCAGTACCCATGTCCACGGTGGTGAGGGAGGCAGCGGGGCTGGTGGAGACTAG

Coding sequence (CDS)

ATGGAGTCCTCATCAAAGATTTGTTTCTGTATTCCTCGCCACAAAAATGGCCACAAAGCTGATGGAGGATCGGAGAAATCTTCCAAATCTAAGCCTTCTCGTCGCAAATCTCATCGAGACTCAAAAGAAGGTAAGCATTCCTCTAGCAGTGATAGCAGTGGAAATGGAAACGCAGGTGAAGAATGTGCAGCCAGTGCCACTGCCGTGGCTGCTGTTGCGGTCACAGCCGTGACCATGGATGCACTTGACGATGATGGTGGCAGTACCCATGTCCACGGTGGTGAGGGAGGCAGCGGGGCTGGTGGAGACTAG

Protein sequence

MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGEECAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGAGGD*
Homology
BLAST of CsGy6G014045 vs. NCBI nr
Match: KAE8645885.1 (hypothetical protein Csa_017706 [Cucumis sativus] >KGN47122.1 hypothetical protein Csa_020675 [Cucumis sativus])

HSP 1 Score: 189 bits (479), Expect = 4.96e-60
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0

Query: 1   MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGE 60
           MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGE
Sbjct: 1   MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGE 60

Query: 61  ECAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGAGGD 103
           ECAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGAGGD
Sbjct: 61  ECAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGAGGD 103

BLAST of CsGy6G014045 vs. NCBI nr
Match: TYK15390.1 (tropomyosin [Cucumis melo var. makuwa])

HSP 1 Score: 167 bits (424), Expect = 5.94e-47
Identity = 96/104 (92.31%), Postives = 98/104 (94.23%), Query Frame = 0

Query: 1   MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGE 60
           MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKS R SKEGKHSS SDSSGNGN+G+
Sbjct: 430 MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGSKEGKHSSGSDSSGNGNSGD 489

Query: 61  ECAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSG-AGGD 103
             AASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSG AGGD
Sbjct: 490 AGAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGGAGGD 533

BLAST of CsGy6G014045 vs. NCBI nr
Match: KAA0061866.1 (tropomyosin [Cucumis melo var. makuwa])

HSP 1 Score: 167 bits (424), Expect = 9.29e-47
Identity = 96/104 (92.31%), Postives = 98/104 (94.23%), Query Frame = 0

Query: 1   MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGE 60
           MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKS R SKEGKHSS SDSSGNGN+G+
Sbjct: 460 MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGSKEGKHSSGSDSSGNGNSGD 519

Query: 61  ECAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSG-AGGD 103
             AASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSG AGGD
Sbjct: 520 AGAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGGAGGD 563

BLAST of CsGy6G014045 vs. NCBI nr
Match: KAG7010529.1 (hypothetical protein SDJN02_27323, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 141 bits (356), Expect = 1.50e-40
Identity = 85/102 (83.33%), Postives = 89/102 (87.25%), Query Frame = 0

Query: 4   SSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGEECA 63
           SSKICFCIPRHKN HK DGGSEKSSKSKPSRRKS   +KEGKHSSSSDSSGNGN G+  A
Sbjct: 59  SSKICFCIPRHKNSHKVDGGSEKSSKSKPSRRKS--GAKEGKHSSSSDSSGNGNTGDASA 118

Query: 64  A-SATAVAAVAVTAVTMDALD-DDGGSTHVHGGEGGSGAGGD 103
           A SA AVAA+AVTAVTMDA+D DDGGSTHVHGGEGG G GGD
Sbjct: 119 AGSAAAVAAIAVTAVTMDAVDEDDGGSTHVHGGEGGGGGGGD 158

BLAST of CsGy6G014045 vs. NCBI nr
Match: KAG6570682.1 (hypothetical protein SDJN03_29597, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 140 bits (353), Expect = 3.04e-39
Identity = 85/102 (83.33%), Postives = 88/102 (86.27%), Query Frame = 0

Query: 4   SSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGEECA 63
           SSKICFCIPRHKN HK DGGSEKSSKSKPSRRKS   +KEGKHSSSSDSSGNGN G   A
Sbjct: 127 SSKICFCIPRHKNSHKVDGGSEKSSKSKPSRRKS--GAKEGKHSSSSDSSGNGNTGAASA 186

Query: 64  A-SATAVAAVAVTAVTMDALD-DDGGSTHVHGGEGGSGAGGD 103
           A SA AVAA+AVTAVTMDA+D DDGGSTHVHGGEGG G GGD
Sbjct: 187 AGSAAAVAAIAVTAVTMDAVDEDDGGSTHVHGGEGGGGGGGD 226

BLAST of CsGy6G014045 vs. ExPASy TrEMBL
Match: A0A0A0KFD0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G188150 PE=4 SV=1)

HSP 1 Score: 189 bits (479), Expect = 2.40e-60
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0

Query: 1   MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGE 60
           MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGE
Sbjct: 1   MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGE 60

Query: 61  ECAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGAGGD 103
           ECAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGAGGD
Sbjct: 61  ECAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGAGGD 103

BLAST of CsGy6G014045 vs. ExPASy TrEMBL
Match: A0A5D3CVK1 (Tropomyosin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold571G00300 PE=4 SV=1)

HSP 1 Score: 167 bits (424), Expect = 2.88e-47
Identity = 96/104 (92.31%), Postives = 98/104 (94.23%), Query Frame = 0

Query: 1   MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGE 60
           MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKS R SKEGKHSS SDSSGNGN+G+
Sbjct: 430 MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGSKEGKHSSGSDSSGNGNSGD 489

Query: 61  ECAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSG-AGGD 103
             AASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSG AGGD
Sbjct: 490 AGAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGGAGGD 533

BLAST of CsGy6G014045 vs. ExPASy TrEMBL
Match: A0A5A7V5U9 (Tropomyosin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G001080 PE=4 SV=1)

HSP 1 Score: 167 bits (424), Expect = 4.50e-47
Identity = 96/104 (92.31%), Postives = 98/104 (94.23%), Query Frame = 0

Query: 1   MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGE 60
           MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKS R SKEGKHSS SDSSGNGN+G+
Sbjct: 460 MESSSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGSKEGKHSSGSDSSGNGNSGD 519

Query: 61  ECAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSG-AGGD 103
             AASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSG AGGD
Sbjct: 520 AGAASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGGAGGD 563

BLAST of CsGy6G014045 vs. ExPASy TrEMBL
Match: A0A6J1D515 (circumsporozoite protein-like OS=Momordica charantia OX=3673 GN=LOC111017006 PE=4 SV=1)

HSP 1 Score: 120 bits (302), Expect = 2.57e-33
Identity = 77/106 (72.64%), Postives = 82/106 (77.36%), Query Frame = 0

Query: 4   SSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGEECA 63
           S+KICFCIPRHKNGHKA+GGSEKSSKSKPSRRKS R  K GKHSSSSDSSG+GN     A
Sbjct: 3   STKICFCIPRHKNGHKANGGSEKSSKSKPSRRKSRRGEKGGKHSSSSDSSGDGNTNTGAA 62

Query: 64  A---SATAVAAVAV---TAVTMDALDDDGGSTHVHGGEGGSGAGGD 103
           A   S  AVAAV V   TA TMDA++DDGGS H HGG GG G GGD
Sbjct: 63  AGGGSDAAVAAVVVMGTTAATMDAVEDDGGSAHGHGG-GGEGGGGD 107

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAE8645885.14.96e-60100.00hypothetical protein Csa_017706 [Cucumis sativus] >KGN47122.1 hypothetical prote... [more]
TYK15390.15.94e-4792.31tropomyosin [Cucumis melo var. makuwa][more]
KAA0061866.19.29e-4792.31tropomyosin [Cucumis melo var. makuwa][more]
KAG7010529.11.50e-4083.33hypothetical protein SDJN02_27323, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6570682.13.04e-3983.33hypothetical protein SDJN03_29597, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
A0A0A0KFD02.40e-60100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G188150 PE=4 SV=1[more]
A0A5D3CVK12.88e-4792.31Tropomyosin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold571G00300 PE... [more]
A0A5A7V5U94.50e-4792.31Tropomyosin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G001080 PE... [more]
A0A6J1D5152.57e-3372.64circumsporozoite protein-like OS=Momordica charantia OX=3673 GN=LOC111017006 PE=... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..67
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 82..103
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 14..30

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy6G014045.1CsGy6G014045.1mRNA