CsGy6G004830.1 (mRNA) Cucumber (Gy14) v2.1

Overview


Name	CsGy6G004830.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Prolamin_like domain-containing protein
Location	Gy14Chr6: 4440336 .. 4440530 (+)
Sequence length	195
RNA-Seq Expression	CsGy6G004830.1
Synteny	CsGy6G004830.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAATAAAGGCGAGCTATTCGACTGGAGCGCTATTAGTGATGACGGTGCTCTCATTACTTGTAGTAGACTCGTTGGCCTTAGTTCAACCTTCTACAGTAGACGACGATGGCATATCACCAATATGGAGTGATTGGGTAGATGAAAATAGAGAGCTGTACTCTAGCACCGTGTTTATCCATGATGAGGAGTGA

mRNA sequence

ATGAGAATAAAGGCGAGCTATTCGACTGGAGCGCTATTAGTGATGACGGTGCTCTCATTACTTGTAGTAGACTCGTTGGCCTTAGTTCAACCTTCTACAGTAGACGACGATGGCATATCACCAATATGGAGTGATTGGGTAGATGAAAATAGAGAGCTGTACTCTAGCACCGTGTTTATCCATGATGAGGAGTGA

Coding sequence (CDS)

ATGAGAATAAAGGCGAGCTATTCGACTGGAGCGCTATTAGTGATGACGGTGCTCTCATTACTTGTAGTAGACTCGTTGGCCTTAGTTCAACCTTCTACAGTAGACGACGATGGCATATCACCAATATGGAGTGATTGGGTAGATGAAAATAGAGAGCTGTACTCTAGCACCGTGTTTATCCATGATGAGGAGTGA

Protein sequence

MRIKASYSTGALLVMTVLSLLVVDSLALVQPSTVDDDGISPIWSDWVDENRELYSSTVFIHDEE*

Homology

[Close]

BLAST of CsGy6G004830.1 vs. NCBI nr
Match: KGN46140.1 (hypothetical protein Csa_004809 [Cucumis sativus])

HSP 1 Score: 125 bits (313), Expect = 6.60e-36
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1  MRIKASYSTGALLVMTVLSLLVVDSLALVQPSTVDDDGISPIWSDWVDENRELYSSTVFI 60
          MRIKASYSTGALLVMTVLSLLVVDSLALVQPSTVDDDGISPIWSDWVDENRELYSSTVFI
Sbjct: 1  MRIKASYSTGALLVMTVLSLLVVDSLALVQPSTVDDDGISPIWSDWVDENRELYSSTVFI 60

Query: 61 HDEE 64
          HDEE
Sbjct: 61 HDEE 64

[Close]

BLAST of CsGy6G004830.1 vs. NCBI nr
Match: KGN50979.1 (hypothetical protein Csa_008880 [Cucumis sativus])

HSP 1 Score: 68.9 bits (167), Expect = 6.92e-13
Identity = 35/44 (79.55%), Postives = 40/44 (90.91%), Query Frame = 0


Query: 8  STGALLVMTVLSLLVVDSLALVQPSTVDDDGISPIWSDWVDENR 51
          ST  LLV+ +LSLLVVDSLALVQPSTVDD+GIS IWSDW+DE+R
Sbjct: 4  STRVLLVVVMLSLLVVDSLALVQPSTVDDNGISSIWSDWLDEDR 47

[Close]

BLAST of CsGy6G004830.1 vs. NCBI nr
Match: KAE8650019.1 (hypothetical protein Csa_009940 [Cucumis sativus])

HSP 1 Score: 67.4 bits (163), Expect = 4.55e-12
Identity = 33/48 (68.75%), Postives = 41/48 (85.42%), Query Frame = 0


Query: 4  KASYSTGALLVMTVLSLLVVDSLALVQPSTVDDDGISPIWSDWVDENR 51
          K S STGALL++ +LSLLVVDSLALV PS +DD+GIS IWS W+D++R
Sbjct: 3  KTSNSTGALLLVVMLSLLVVDSLALVHPSIIDDNGISSIWSGWIDKDR 50

[Close]

BLAST of CsGy6G004830.1 vs. ExPASy TrEMBL
Match: A0A0A0K8R6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G056570 PE=4 SV=1)

HSP 1 Score: 125 bits (313), Expect = 3.20e-36
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0


Query: 1  MRIKASYSTGALLVMTVLSLLVVDSLALVQPSTVDDDGISPIWSDWVDENRELYSSTVFI 60
          MRIKASYSTGALLVMTVLSLLVVDSLALVQPSTVDDDGISPIWSDWVDENRELYSSTVFI
Sbjct: 1  MRIKASYSTGALLVMTVLSLLVVDSLALVQPSTVDDDGISPIWSDWVDENRELYSSTVFI 60

Query: 61 HDEE 64
          HDEE
Sbjct: 61 HDEE 64

[Close]

BLAST of CsGy6G004830.1 vs. ExPASy TrEMBL
Match: A0A0A0KQ41 (Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G381840 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.35e-13
Identity = 35/44 (79.55%), Postives = 40/44 (90.91%), Query Frame = 0


Query: 8  STGALLVMTVLSLLVVDSLALVQPSTVDDDGISPIWSDWVDENR 51
          ST  LLV+ +LSLLVVDSLALVQPSTVDD+GIS IWSDW+DE+R
Sbjct: 4  STRVLLVVVMLSLLVVDSLALVQPSTVDDNGISSIWSDWLDEDR 47

[Close]

BLAST of CsGy6G004830.1 vs. ExPASy TrEMBL
Match: A0A0A0L535 (Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G008300 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.44e-12
Identity = 33/48 (68.75%), Postives = 41/48 (85.42%), Query Frame = 0


Query: 4  KASYSTGALLVMTVLSLLVVDSLALVQPSTVDDDGISPIWSDWVDENR 51
          K S STGALL++ +LSLLVVDSLALV PS +DD+GIS IWS W+D++R
Sbjct: 3  KTSNSTGALLLVVMLSLLVVDSLALVHPSIIDDNGISSIWSGWIDKDR 50

The following BLAST results are available for this feature:

BLAST of CsGy6G004830.1 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy6G004830.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN46140.1	6.60e-36	100.00	hypothetical protein Csa_004809 [Cucumis sativus]	[more]
KGN50979.1	6.92e-13	79.55	hypothetical protein Csa_008880 [Cucumis sativus]	[more]
KAE8650019.1	4.55e-12	68.75	hypothetical protein Csa_009940 [Cucumis sativus]	[more]

BLAST of CsGy6G004830.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8R6	3.20e-36	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G056570 PE=4 SV=1	[more]
A0A0A0KQ41	3.35e-13	79.55	Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G3818...	[more]
A0A0A0L535	1.44e-12	68.75	Prolamin_like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G0083...	[more]

BLAST of CsGy6G004830.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy6G004830	CsGy6G004830	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy6G004830.1.exon1	CsGy6G004830.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.CsGy6G004830.1	cds.CsGy6G004830.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy6G004830.1	CsGy6G004830.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0110165	cellular anatomical entity