Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGAATGGAATTCATTCCCCCAGTTTGATGTTCTTCTTCCACCACAGATTCAAAACCCCACCATAATGCTTAAAGCCACAAAGAAGAAACTCAAAGGATTATGGTCCAAAATGAAGAAGAAGAATAAGAAGAAAAAACCAAACGAAACCCAAACAAATTCCTACCAGTACTGCTGCATTTGCCATTGCTCCTCCTCAACCCATCAGCATCAGCAGCAGCAGCAGCCCTCAGCTCCCCCACTTCCGCCATGGCTCAACGATGCTCCCACCTTTCTGCCGCCTTCAACGCAATCGCAATTTGAACATCCAGACACAGCTGATGAAATGGTGGAACCGCTTGTGGCTAATCAGTGGTCGTACCAGCAATACTTGGTGGCAGAGCCGGTTTACGGGGTGCCCATCATCGTGGAAACTGAAAGTGGAAGAGGTCAGAAATGGAAAAGGTTGATTAAGTTATTTGAGTGCTTCTGCCCCTGTTTTGGTATTACACAACAACTTTACTACATACCATAG
mRNA sequence
ATGAATGAATGGAATTCATTCCCCCAGTTTGATGTTCTTCTTCCACCACAGATTCAAAACCCCACCATAATGCTTAAAGCCACAAAGAAGAAACTCAAAGGATTATGGTCCAAAATGAAGAAGAAGAATAAGAAGAAAAAACCAAACGAAACCCAAACAAATTCCTACCAGTACTGCTGCATTTGCCATTGCTCCTCCTCAACCCATCAGCATCAGCAGCAGCAGCAGCCCTCAGCTCCCCCACTTCCGCCATGGCTCAACGATGCTCCCACCTTTCTGCCGCCTTCAACGCAATCGCAATTTGAACATCCAGACACAGCTGATGAAATGGTGGAACCGCTTGTGGCTAATCAGTGGTCGTACCAGCAATACTTGGTGGCAGAGCCGGTTTACGGGGTGCCCATCATCGTGGAAACTGAAAGTGGAAGAGGTCAGAAATGGAAAAGGTTGATTAAGTTATTTGAGTGCTTCTGCCCCTGTTTTGGTATTACACAACAACTTTACTACATACCATAG
Coding sequence (CDS)
ATGAATGAATGGAATTCATTCCCCCAGTTTGATGTTCTTCTTCCACCACAGATTCAAAACCCCACCATAATGCTTAAAGCCACAAAGAAGAAACTCAAAGGATTATGGTCCAAAATGAAGAAGAAGAATAAGAAGAAAAAACCAAACGAAACCCAAACAAATTCCTACCAGTACTGCTGCATTTGCCATTGCTCCTCCTCAACCCATCAGCATCAGCAGCAGCAGCAGCCCTCAGCTCCCCCACTTCCGCCATGGCTCAACGATGCTCCCACCTTTCTGCCGCCTTCAACGCAATCGCAATTTGAACATCCAGACACAGCTGATGAAATGGTGGAACCGCTTGTGGCTAATCAGTGGTCGTACCAGCAATACTTGGTGGCAGAGCCGGTTTACGGGGTGCCCATCATCGTGGAAACTGAAAGTGGAAGAGGTCAGAAATGGAAAAGGTTGATTAAGTTATTTGAGTGCTTCTGCCCCTGTTTTGGTATTACACAACAACTTTACTACATACCATAG
Protein sequence
MNEWNSFPQFDVLLPPQIQNPTIMLKATKKKLKGLWSKMKKKNKKKKPNETQTNSYQYCCICHCSSSTHQHQQQQQPSAPPLPPWLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQWSYQQYLVAEPVYGVPIIVETESGRGQKWKRLIKLFECFCPCFGITQQLYYIP*
Homology
BLAST of CsGy5G011760 vs. NCBI nr
Match:
KGN49708.1 (hypothetical protein Csa_018344 [Cucumis sativus])
HSP 1 Score: 349 bits (895), Expect = 2.72e-121
Identity = 165/171 (96.49%), Postives = 166/171 (97.08%), Query Frame = 0
Query: 1 MNEWNSFPQFDVLLPPQIQNPTIMLKATKKKLKGLWSKMKKKNKKKKPNETQTNSYQYCC 60
MNEWNSF QFDVLLPPQIQNPTIMLKATKKKLKGLWSKMKKKNKKKKPNETQTNSYQYCC
Sbjct: 1 MNEWNSFSQFDVLLPPQIQNPTIMLKATKKKLKGLWSKMKKKNKKKKPNETQTNSYQYCC 60
Query: 61 ICHCSSSTHQHQQQQQPSAPPLPPWLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQWS 120
ICHCSSSTHQH QQQPSAPPLP WLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQWS
Sbjct: 61 ICHCSSSTHQH-NQQQPSAPPLPLWLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQWS 120
Query: 121 YQQYLVAEPVYGVPIIVETESGRGQKWKRLIKLFECFCPCFGITQQLYYIP 171
YQQYLVAEPVYGVPIIVETESGRGQKWKRLIKLFEC CPCFGITQQLYY+P
Sbjct: 121 YQQYLVAEPVYGVPIIVETESGRGQKWKRLIKLFECLCPCFGITQQLYYVP 170
BLAST of CsGy5G011760 vs. NCBI nr
Match:
KAA0054146.1 (AUX/IAA protein [Cucumis melo var. makuwa])
HSP 1 Score: 247 bits (631), Expect = 1.55e-81
Identity = 121/148 (81.76%), Postives = 126/148 (85.14%), Query Frame = 0
Query: 24 MLKATKKKLKGLWSKMKKKNKKKKPNETQTNSYQYCCICHCSSSTHQHQQQQQPSAPPLP 83
MLKATKKKLKGLWSKMKKK KPN+TQTN YQYCC CHCSSS+H H QPSAPPLP
Sbjct: 1 MLKATKKKLKGLWSKMKKK----KPNKTQTNCYQYCCSCHCSSSSHLH---HQPSAPPLP 60
Query: 84 PWLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQWSYQQYLVAEPVYGVPIIVETESGR 143
PWLN+ PTFLPP TQSQFEHPD AD MV NQWSYQQYLVAEPVYGVPIIV+TES R
Sbjct: 61 PWLNEDPTFLPPPTQSQFEHPDRADGMV----TNQWSYQQYLVAEPVYGVPIIVKTESRR 120
Query: 144 GQKWKRLIKLFECFCPCFGITQQLYYIP 171
QKWKRLIKLF+CFCPCFGITQQLYYIP
Sbjct: 121 DQKWKRLIKLFDCFCPCFGITQQLYYIP 137
BLAST of CsGy5G011760 vs. NCBI nr
Match:
XP_022933064.1 (uncharacterized protein LOC111439771 [Cucurbita moschata])
HSP 1 Score: 108 bits (269), Expect = 1.38e-26
Identity = 71/153 (46.41%), Postives = 88/153 (57.52%), Query Frame = 0
Query: 24 MLKATKKKLKGLWSKMKKKNKKKKPNETQTNSYQYCCICHCSSSTHQHQQQQQPSAPPLP 83
MLKA KKKLK WS+ KK+ K PN+ + CC CHCSS+ QPSAPPLP
Sbjct: 1 MLKAAKKKLK-FWSRSKKRKKIPNPNDFPPPCH--CCTCHCSSAI-------QPSAPPLP 60
Query: 84 PWLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQWSYQQYLVAEPVYGVPIIVETESGR 143
PWL+D PPS EHP+ A E+ PLVA YQ Y+ +PVYGVPIIV+T+S R
Sbjct: 61 PWLDDR--IFPPS-----EHPEEA-EIAAPLVAAPL-YQHYMDPDPVYGVPIIVQTDSRR 120
Query: 144 -GQKWKRL----------IKLFECFCPCFGITQ 165
G + +R I++ CFCPCF +
Sbjct: 121 DGSRSRRFAVSGCVGELGIRIIGCFCPCFRTPE 134
BLAST of CsGy5G011760 vs. NCBI nr
Match:
KAG6601672.1 (hypothetical protein SDJN03_06905, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 106 bits (265), Expect = 6.20e-26
Identity = 72/151 (47.68%), Postives = 88/151 (58.28%), Query Frame = 0
Query: 24 MLKATKKKLKGLWSKMKKKNKKKKPNETQTNSYQ--YCCICHCSSSTHQHQQQQQPSAPP 83
MLKA KKKLK WS+ KK+ K PN+ +CC CHCSS+ QPSAPP
Sbjct: 1 MLKAAKKKLK-FWSRSKKRKKIPDPNDFTPPPPPPCHCCTCHCSSAI-------QPSAPP 60
Query: 84 LPPWLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQWSYQQYLVAEPVYGVPIIVETES 143
LPPWL+D F PP EHP+ A E+ PLVA YQQY+ +PVYGVPIIV+T+S
Sbjct: 61 LPPWLDDR-IFPPP------EHPEEA-EIAAPLVAAPL-YQQYMDPDPVYGVPIIVQTDS 120
Query: 144 GR-GQKWKRL----------IKLFECFCPCF 161
R G + +R I++ CFCPCF
Sbjct: 121 RRDGSRSRRFAVSGCVGDLGIRIIGCFCPCF 134
BLAST of CsGy5G011760 vs. NCBI nr
Match:
XP_016749822.1 (uncharacterized protein LOC107958521 [Gossypium hirsutum] >KAB2081181.1 hypothetical protein ES319_A05G115100v1 [Gossypium barbadense] >KAG4198822.1 hypothetical protein ERO13_A05G110000v2 [Gossypium hirsutum] >TYH16438.1 hypothetical protein ES288_A05G117100v1 [Gossypium darwinii])
HSP 1 Score: 82.4 bits (202), Expect = 3.86e-16
Identity = 63/169 (37.28%), Postives = 84/169 (49.70%), Query Frame = 0
Query: 24 MLKATKKKLKGLWSKMKKKNKKKKPNETQTNSYQYCCICHCSSSTHQHQQQ-------QQ 83
M KA KK LK WS+ K+K K P + CICHCS ST H Q Q
Sbjct: 1 MFKAVKK-LK-FWSRKKRKRKSLAPQPSH-------CICHCSHSTSSHYYQCNYPYSPLQ 60
Query: 84 PSAPPLPPWL------NDAPTFLPPSTQS--QFEHPDTADEMVE--PLV--ANQWSYQQY 143
PSAPPLPPWL ++ PT + +F HP + +E P++ A SYQQY
Sbjct: 61 PSAPPLPPWLQAELTQDEFPTLEQAEAEPFPEFSHPTDLVQDIESAPMIPAAAVPSYQQY 120
Query: 144 LVAEPVYGVPIIVETESGRGQKWKRL--------IKLFECFCPCFGITQ 165
+V+ PVYG P++ +T GR ++ ++L CFCPC I +
Sbjct: 121 MVSNPVYGPPVVQQT--GRRERSGGYFGCIIDISLRLIRCFCPCVHIRE 158
BLAST of CsGy5G011760 vs. ExPASy TrEMBL
Match:
A0A0A0KJG0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G077760 PE=4 SV=1)
HSP 1 Score: 349 bits (895), Expect = 1.32e-121
Identity = 165/171 (96.49%), Postives = 166/171 (97.08%), Query Frame = 0
Query: 1 MNEWNSFPQFDVLLPPQIQNPTIMLKATKKKLKGLWSKMKKKNKKKKPNETQTNSYQYCC 60
MNEWNSF QFDVLLPPQIQNPTIMLKATKKKLKGLWSKMKKKNKKKKPNETQTNSYQYCC
Sbjct: 1 MNEWNSFSQFDVLLPPQIQNPTIMLKATKKKLKGLWSKMKKKNKKKKPNETQTNSYQYCC 60
Query: 61 ICHCSSSTHQHQQQQQPSAPPLPPWLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQWS 120
ICHCSSSTHQH QQQPSAPPLP WLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQWS
Sbjct: 61 ICHCSSSTHQH-NQQQPSAPPLPLWLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQWS 120
Query: 121 YQQYLVAEPVYGVPIIVETESGRGQKWKRLIKLFECFCPCFGITQQLYYIP 171
YQQYLVAEPVYGVPIIVETESGRGQKWKRLIKLFEC CPCFGITQQLYY+P
Sbjct: 121 YQQYLVAEPVYGVPIIVETESGRGQKWKRLIKLFECLCPCFGITQQLYYVP 170
BLAST of CsGy5G011760 vs. ExPASy TrEMBL
Match:
A0A5A7UIP5 (AUX/IAA protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G00680 PE=4 SV=1)
HSP 1 Score: 247 bits (631), Expect = 7.53e-82
Identity = 121/148 (81.76%), Postives = 126/148 (85.14%), Query Frame = 0
Query: 24 MLKATKKKLKGLWSKMKKKNKKKKPNETQTNSYQYCCICHCSSSTHQHQQQQQPSAPPLP 83
MLKATKKKLKGLWSKMKKK KPN+TQTN YQYCC CHCSSS+H H QPSAPPLP
Sbjct: 1 MLKATKKKLKGLWSKMKKK----KPNKTQTNCYQYCCSCHCSSSSHLH---HQPSAPPLP 60
Query: 84 PWLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQWSYQQYLVAEPVYGVPIIVETESGR 143
PWLN+ PTFLPP TQSQFEHPD AD MV NQWSYQQYLVAEPVYGVPIIV+TES R
Sbjct: 61 PWLNEDPTFLPPPTQSQFEHPDRADGMV----TNQWSYQQYLVAEPVYGVPIIVKTESRR 120
Query: 144 GQKWKRLIKLFECFCPCFGITQQLYYIP 171
QKWKRLIKLF+CFCPCFGITQQLYYIP
Sbjct: 121 DQKWKRLIKLFDCFCPCFGITQQLYYIP 137
BLAST of CsGy5G011760 vs. ExPASy TrEMBL
Match:
A0A6J1EYP6 (uncharacterized protein LOC111439771 OS=Cucurbita moschata OX=3662 GN=LOC111439771 PE=4 SV=1)
HSP 1 Score: 108 bits (269), Expect = 6.70e-27
Identity = 71/153 (46.41%), Postives = 88/153 (57.52%), Query Frame = 0
Query: 24 MLKATKKKLKGLWSKMKKKNKKKKPNETQTNSYQYCCICHCSSSTHQHQQQQQPSAPPLP 83
MLKA KKKLK WS+ KK+ K PN+ + CC CHCSS+ QPSAPPLP
Sbjct: 1 MLKAAKKKLK-FWSRSKKRKKIPNPNDFPPPCH--CCTCHCSSAI-------QPSAPPLP 60
Query: 84 PWLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQWSYQQYLVAEPVYGVPIIVETESGR 143
PWL+D PPS EHP+ A E+ PLVA YQ Y+ +PVYGVPIIV+T+S R
Sbjct: 61 PWLDDR--IFPPS-----EHPEEA-EIAAPLVAAPL-YQHYMDPDPVYGVPIIVQTDSRR 120
Query: 144 -GQKWKRL----------IKLFECFCPCFGITQ 165
G + +R I++ CFCPCF +
Sbjct: 121 DGSRSRRFAVSGCVGELGIRIIGCFCPCFRTPE 134
BLAST of CsGy5G011760 vs. ExPASy TrEMBL
Match:
A0A1U8PF34 (uncharacterized protein LOC107958521 OS=Gossypium hirsutum OX=3635 GN=LOC107958521 PE=4 SV=1)
HSP 1 Score: 82.4 bits (202), Expect = 1.87e-16
Identity = 63/169 (37.28%), Postives = 84/169 (49.70%), Query Frame = 0
Query: 24 MLKATKKKLKGLWSKMKKKNKKKKPNETQTNSYQYCCICHCSSSTHQHQQQ-------QQ 83
M KA KK LK WS+ K+K K P + CICHCS ST H Q Q
Sbjct: 1 MFKAVKK-LK-FWSRKKRKRKSLAPQPSH-------CICHCSHSTSSHYYQCNYPYSPLQ 60
Query: 84 PSAPPLPPWL------NDAPTFLPPSTQS--QFEHPDTADEMVE--PLV--ANQWSYQQY 143
PSAPPLPPWL ++ PT + +F HP + +E P++ A SYQQY
Sbjct: 61 PSAPPLPPWLQAELTQDEFPTLEQAEAEPFPEFSHPTDLVQDIESAPMIPAAAVPSYQQY 120
Query: 144 LVAEPVYGVPIIVETESGRGQKWKRL--------IKLFECFCPCFGITQ 165
+V+ PVYG P++ +T GR ++ ++L CFCPC I +
Sbjct: 121 MVSNPVYGPPVVQQT--GRRERSGGYFGCIIDISLRLIRCFCPCVHIRE 158
BLAST of CsGy5G011760 vs. ExPASy TrEMBL
Match:
A0A5J5VM38 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A05G115100v1 PE=4 SV=1)
HSP 1 Score: 82.4 bits (202), Expect = 1.87e-16
Identity = 63/169 (37.28%), Postives = 84/169 (49.70%), Query Frame = 0
Query: 24 MLKATKKKLKGLWSKMKKKNKKKKPNETQTNSYQYCCICHCSSSTHQHQQQ-------QQ 83
M KA KK LK WS+ K+K K P + CICHCS ST H Q Q
Sbjct: 1 MFKAVKK-LK-FWSRKKRKRKSLAPQPSH-------CICHCSHSTSSHYYQCNYPYSPLQ 60
Query: 84 PSAPPLPPWL------NDAPTFLPPSTQS--QFEHPDTADEMVE--PLV--ANQWSYQQY 143
PSAPPLPPWL ++ PT + +F HP + +E P++ A SYQQY
Sbjct: 61 PSAPPLPPWLQAELTQDEFPTLEQAEAEPFPEFSHPTDLVQDIESAPMIPAAAVPSYQQY 120
Query: 144 LVAEPVYGVPIIVETESGRGQKWKRL--------IKLFECFCPCFGITQ 165
+V+ PVYG P++ +T GR ++ ++L CFCPC I +
Sbjct: 121 MVSNPVYGPPVVQQT--GRRERSGGYFGCIIDISLRLIRCFCPCVHIRE 158
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| KGN49708.1 | 2.72e-121 | 96.49 | hypothetical protein Csa_018344 [Cucumis sativus] | [more] |
| KAA0054146.1 | 1.55e-81 | 81.76 | AUX/IAA protein [Cucumis melo var. makuwa] | [more] |
| XP_022933064.1 | 1.38e-26 | 46.41 | uncharacterized protein LOC111439771 [Cucurbita moschata] | [more] |
| KAG6601672.1 | 6.20e-26 | 47.68 | hypothetical protein SDJN03_06905, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| XP_016749822.1 | 3.86e-16 | 37.28 | uncharacterized protein LOC107958521 [Gossypium hirsutum] >KAB2081181.1 hypothet... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0KJG0 | 1.32e-121 | 96.49 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G077760 PE=4 SV=1 | [more] |
| A0A5A7UIP5 | 7.53e-82 | 81.76 | AUX/IAA protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G0068... | [more] |
| A0A6J1EYP6 | 6.70e-27 | 46.41 | uncharacterized protein LOC111439771 OS=Cucurbita moschata OX=3662 GN=LOC1114397... | [more] |
| A0A1U8PF34 | 1.87e-16 | 37.28 | uncharacterized protein LOC107958521 OS=Gossypium hirsutum OX=3635 GN=LOC1079585... | [more] |
| A0A5J5VM38 | 1.87e-16 | 37.28 | Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A05G115100v1 PE... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
