CsaV3_2G004880 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_2G004880
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	TMV resistance protein N-like
Location	chr2: 2646750 .. 2647437 (+)
RNA-Seq Expression	CsaV3_2G004880
Synteny	CsaV3_2G004880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGGATTGTACGTTGCTTGAAGAAATTCCAAAGGTTCCAGAAGGAGTAGTTTGTATGGATGCTGGAGGGTGCGTATTATTGACCAGATTTCCTGACTACATACCTGATTTCATATCTTGTGAGGGTAATTTGGTGTGTATCATTTCTTTCTCATGACCTCATCTCTCATGTATTTCGTTTATATAAGAATTAAGTTTACTCTTATTTTGCAGGAAGATGAAAAAAGTTTTGGAGAATTCAAACAACTCATATTAATGAATTATGATATTCCAGATTGGTGCAGGTACAAGAGTATGAACAACTCAATAACATTTAATTTTCCAACTGATTGTCTAAGTGGGAAAAGGAAGGCTTTTATTGTTCCTTGTGTCAAATTTCAATCTAATACTGGTCACACGAGGTGTTGGCTTCATTGTACCGTGTTTGTCAACGATATTGAAGTATGGTGTCGAATGTTAATGCCCAGATCTGACATATTGTGTCTAGATTTGAAGTAATATCATCAGGTGAGTATCTATGGATGCCAGTAGTTGATATTAAGTCCTCAAGAGATATTTTGGATAGAGTTACAGTGTTATTTGATGTTCGTGTTCCAAAGAGGCAACTACTTCATGTTTGTGATCCAAAGTGGGAAGATGAAGTAAGTATAAAAATGTATGGTGTTCACGTGATCATGGAGGAATAA

mRNA sequence

ATGAGGGATTGTACGTTGCTTGAAGAAATTCCAAAGGTTCCAGAAGGAGTAGTTTGTATGGATGCTGGAGGGTGCGTATTATTGACCAGATTTCCTGACTACATACCTGATTTCATATCTTGTGAGGGTAATTTGGAAGATGAAAAAAGTTTTGGAGAATTCAAACAACTCATATTAATGAATTATGATATTCCAGATTGGTGCAGATTTGAAGTAATATCATCAGGTGAGTATCTATGGATGCCAGTAGTTGATATTAAGTCCTCAAGAGATATTTTGGATAGAGTTACAGTGTTATTTGATGTTCGTGTTCCAAAGAGGCAACTACTTCATGTTTGTGATCCAAAGTGGGAAGATGAAGTAAGTATAAAAATGTATGGTGTTCACGTGATCATGGAGGAATAA

Coding sequence (CDS)

ATGAGGGATTGTACGTTGCTTGAAGAAATTCCAAAGGTTCCAGAAGGAGTAGTTTGTATGGATGCTGGAGGGTGCGTATTATTGACCAGATTTCCTGACTACATACCTGATTTCATATCTTGTGAGGGTAATTTGGAAGATGAAAAAAGTTTTGGAGAATTCAAACAACTCATATTAATGAATTATGATATTCCAGATTGGTGCAGATTTGAAGTAATATCATCAGGTGAGTATCTATGGATGCCAGTAGTTGATATTAAGTCCTCAAGAGATATTTTGGATAGAGTTACAGTGTTATTTGATGTTCGTGTTCCAAAGAGGCAACTACTTCATGTTTGTGATCCAAAGTGGGAAGATGAAGTAAGTATAAAAATGTATGGTGTTCACGTGATCATGGAGGAATAA

Protein sequence

MRDCTLLEEIPKVPEGVVCMDAGGCVLLTRFPDYIPDFISCEGNLEDEKSFGEFKQLILMNYDIPDWCRFEVISSGEYLWMPVVDIKSSRDILDRVTVLFDVRVPKRQLLHVCDPKWEDEVSIKMYGVHVIMEE*

Homology

[Close]

BLAST of CsaV3_2G004880 vs. NCBI nr
Match: KGN60865.1 (hypothetical protein Csa_023466 [Cucumis sativus])

HSP 1 Score: 290.0 bits (741), Expect = 1.0e-74
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MRDCTLLEEIPKVPEGVVCMDAGGCVLLTRFPDYIPDFISCEGNLEDEKSFGEFKQLILM 60
           MRDCTLLEEIPKVPEGVVCMDAGGCVLLTRFPDYIPDFISCEGNLEDEKSFGEFKQLILM
Sbjct: 1   MRDCTLLEEIPKVPEGVVCMDAGGCVLLTRFPDYIPDFISCEGNLEDEKSFGEFKQLILM 60

Query: 61  NYDIPDWCRFEVISSGEYLWMPVVDIKSSRDILDRVTVLFDVRVPKRQLLHVCDPKWEDE 120
           NYDIPDWCRFEVISSGEYLWMPVVDIKSSRDILDRVTVLFDVRVPKRQLLHVCDPKWEDE
Sbjct: 61  NYDIPDWCRFEVISSGEYLWMPVVDIKSSRDILDRVTVLFDVRVPKRQLLHVCDPKWEDE 120

Query: 121 VSIKMYGVHVIMEE 135
           VSIKMYGVHVIMEE
Sbjct: 121 VSIKMYGVHVIMEE 134

[Close]

BLAST of CsaV3_2G004880 vs. NCBI nr
Match: XP_016901487.1 (PREDICTED: TMV resistance protein N-like [Cucumis melo])

HSP 1 Score: 122.1 bits (305), Expect = 3.7e-24
Identity = 84/211 (39.81%), Postives = 96/211 (45.50%), Query Frame = 0


Query: 3   DCTLLEEIPKVPEGVVCMDAGGCVLLTRFPDYIPDFISCEGNLEDE-KSFGEFKQLILMN 62
           DC LLEEIPK+PEG V M+A GCV L RFPD IPDFISC+   E E    G FK L+LMN
Sbjct: 776 DCKLLEEIPKIPEGAVTMNASGCVSLARFPDNIPDFISCKFYEEVEYTKHGVFKNLVLMN 835

Query: 63  YDIPDWCR-----------FEVI------------------------------------- 122
            DIPDWC+           F VI                                     
Sbjct: 836 CDIPDWCKYKSTNNSITFLFPVIDYLSWKRKAFIAPCVKIQVTAYPFHLAYRVFINDFEV 895

Query: 123 ---------SSGEYLWMPVVD------------------IKSSRDILDRVTVLFDVRVPK 135
                    S GEYLWM V+D                  I SSR ILD++TVLF+V  P+
Sbjct: 896 RKSFWMDDRSRGEYLWMQVLDPCVHFNPYGDDLNQPRFRINSSRGILDKITVLFEVITPE 955

[Close]

BLAST of CsaV3_2G004880 vs. NCBI nr
Match: XP_031736691.1 (disease resistance-like protein DSC1 [Cucumis sativus])

HSP 1 Score: 107.5 bits (267), Expect = 9.4e-20
Identity = 73/204 (35.78%), Postives = 93/204 (45.59%), Query Frame = 0


Query: 3    DCTLLEEIPKVPEGVVCMDAGGCVLLTRFPDYIPDFISCEGNLEDEKSFGEFKQLILMNY 62
            +C  LEEI KVP+GVV MD  GCV L RFP+ IPDFISC+ N+E +K  G  KQLILMN 
Sbjct: 886  ECKSLEEILKVPKGVVRMDTRGCVSLARFPNNIPDFISCDDNVEYDKKDGVIKQLILMNC 945

Query: 63   DIPDWCRFEV-------------------------------------------------- 122
            DIPDWC+++                                                   
Sbjct: 946  DIPDWCKYKSMNDSVTFDFLADYLSWKRKAFIALCVKFHVTNDHELVKLNCRVLFINDIE 1005

Query: 123  -------------ISSGEYLWMPVVDIKSSR-------DILDRVTVLFDVRV--PKRQLL 135
                         +S GE LWM V+     R       DI+D ++  F + +   K  LL
Sbjct: 1006 VWSRMSISNFNFWLSRGECLWMAVLHPCMHRLINPYGDDIMD-ISPNFSIGILDDKITLL 1065

[Close]

BLAST of CsaV3_2G004880 vs. NCBI nr
Match: KAE8651666.1 (hypothetical protein Csa_021160 [Cucumis sativus])

HSP 1 Score: 107.5 bits (267), Expect = 9.4e-20
Identity = 73/204 (35.78%), Postives = 93/204 (45.59%), Query Frame = 0


Query: 3    DCTLLEEIPKVPEGVVCMDAGGCVLLTRFPDYIPDFISCEGNLEDEKSFGEFKQLILMNY 62
            +C  LEEI KVP+GVV MD  GCV L RFP+ IPDFISC+ N+E +K  G  KQLILMN 
Sbjct: 858  ECKSLEEILKVPKGVVRMDTRGCVSLARFPNNIPDFISCDDNVEYDKKDGVIKQLILMNC 917

Query: 63   DIPDWCRFEV-------------------------------------------------- 122
            DIPDWC+++                                                   
Sbjct: 918  DIPDWCKYKSMNDSVTFDFLADYLSWKRKAFIALCVKFHVTNDHELVKLNCRVLFINDIE 977

Query: 123  -------------ISSGEYLWMPVVDIKSSR-------DILDRVTVLFDVRV--PKRQLL 135
                         +S GE LWM V+     R       DI+D ++  F + +   K  LL
Sbjct: 978  VWSRMSISNFNFWLSRGECLWMAVLHPCMHRLINPYGDDIMD-ISPNFSIGILDDKITLL 1037

[Close]

BLAST of CsaV3_2G004880 vs. NCBI nr
Match: XP_011649005.1 (TMV resistance protein N isoform X1 [Cucumis sativus])

HSP 1 Score: 103.6 bits (257), Expect = 1.4e-18
Identity = 47/86 (54.65%), Postives = 61/86 (70.93%), Query Frame = 0


Query: 3   DCTLLEEIPKVPEGVVCMDAGGCVLLTRFPDYIPDFISCEGNLEDEKSFGEFKQLILMNY 62
           +C LLEEIPKVP+GVV M+A GC+ LTRFPD IPDFI C+ N+E +K     KQLILMN 
Sbjct: 858 ECKLLEEIPKVPKGVVYMNAIGCISLTRFPDNIPDFICCDDNVEYDKKDQVIKQLILMNC 917

Query: 63  DIPDWCRFEVISSGEYLWMPVVDIKS 89
           DIPDW  ++ +++      P++D  S
Sbjct: 918 DIPDWFSYKSMNNSVTFLFPLIDYLS 943

[Close]

BLAST of CsaV3_2G004880 vs. ExPASy TrEMBL
Match: A0A0A0LFN6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G020880 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 5.0e-75
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MRDCTLLEEIPKVPEGVVCMDAGGCVLLTRFPDYIPDFISCEGNLEDEKSFGEFKQLILM 60
           MRDCTLLEEIPKVPEGVVCMDAGGCVLLTRFPDYIPDFISCEGNLEDEKSFGEFKQLILM
Sbjct: 1   MRDCTLLEEIPKVPEGVVCMDAGGCVLLTRFPDYIPDFISCEGNLEDEKSFGEFKQLILM 60

Query: 61  NYDIPDWCRFEVISSGEYLWMPVVDIKSSRDILDRVTVLFDVRVPKRQLLHVCDPKWEDE 120
           NYDIPDWCRFEVISSGEYLWMPVVDIKSSRDILDRVTVLFDVRVPKRQLLHVCDPKWEDE
Sbjct: 61  NYDIPDWCRFEVISSGEYLWMPVVDIKSSRDILDRVTVLFDVRVPKRQLLHVCDPKWEDE 120

Query: 121 VSIKMYGVHVIMEE 135
           VSIKMYGVHVIMEE
Sbjct: 121 VSIKMYGVHVIMEE 134

[Close]

BLAST of CsaV3_2G004880 vs. ExPASy TrEMBL
Match: A0A1S4DZR7 (TMV resistance protein N-like OS=Cucumis melo OX=3656 GN=LOC103499509 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.8e-24
Identity = 84/211 (39.81%), Postives = 96/211 (45.50%), Query Frame = 0


Query: 3   DCTLLEEIPKVPEGVVCMDAGGCVLLTRFPDYIPDFISCEGNLEDE-KSFGEFKQLILMN 62
           DC LLEEIPK+PEG V M+A GCV L RFPD IPDFISC+   E E    G FK L+LMN
Sbjct: 776 DCKLLEEIPKIPEGAVTMNASGCVSLARFPDNIPDFISCKFYEEVEYTKHGVFKNLVLMN 835

Query: 63  YDIPDWCR-----------FEVI------------------------------------- 122
            DIPDWC+           F VI                                     
Sbjct: 836 CDIPDWCKYKSTNNSITFLFPVIDYLSWKRKAFIAPCVKIQVTAYPFHLAYRVFINDFEV 895

Query: 123 ---------SSGEYLWMPVVD------------------IKSSRDILDRVTVLFDVRVPK 135
                    S GEYLWM V+D                  I SSR ILD++TVLF+V  P+
Sbjct: 896 RKSFWMDDRSRGEYLWMQVLDPCVHFNPYGDDLNQPRFRINSSRGILDKITVLFEVITPE 955

[Close]

BLAST of CsaV3_2G004880 vs. ExPASy TrEMBL
Match: A0A0A0LJ96 (TIR domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G059700 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 5.0e-19
Identity = 72/200 (36.00%), Postives = 91/200 (45.50%), Query Frame = 0


Query: 7    LEEIPKVPEGVVCMDAGGCVLLTRFPDYIPDFISCEGNLEDEKSFGEFKQLILMNYDIPD 66
            LEEI KVP+GVV MD  GCV L RFP+ IPDFISC+ N+E +K  G  KQLILMN DIPD
Sbjct: 825  LEEILKVPKGVVRMDTRGCVSLARFPNNIPDFISCDDNVEYDKKDGVIKQLILMNCDIPD 884

Query: 67   WCRFEV------------------------------------------------------ 126
            WC+++                                                       
Sbjct: 885  WCKYKSMNDSVTFDFLADYLSWKRKAFIALCVKFHVTNDHELVKLNCRVLFINDIEVWSR 944

Query: 127  ---------ISSGEYLWMPVVDIKSSR-------DILDRVTVLFDVRV--PKRQLLHVCD 135
                     +S GE LWM V+     R       DI+D ++  F + +   K  LL   +
Sbjct: 945  MSISNFNFWLSRGECLWMAVLHPCMHRLINPYGDDIMD-ISPNFSIGILDDKITLLFEVN 1004

[Close]

BLAST of CsaV3_2G004880 vs. ExPASy TrEMBL
Match: A0A0A0LJK8 (TIR domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G075330 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 6.6e-19
Identity = 47/86 (54.65%), Postives = 61/86 (70.93%), Query Frame = 0


Query: 3   DCTLLEEIPKVPEGVVCMDAGGCVLLTRFPDYIPDFISCEGNLEDEKSFGEFKQLILMNY 62
           +C LLEEIPKVP+GVV M+A GC+ LTRFPD IPDFI C+ N+E +K     KQLILMN 
Sbjct: 858 ECKLLEEIPKVPKGVVYMNAIGCISLTRFPDNIPDFICCDDNVEYDKKDQVIKQLILMNC 917

Query: 63  DIPDWCRFEVISSGEYLWMPVVDIKS 89
           DIPDW  ++ +++      P++D  S
Sbjct: 918 DIPDWFSYKSMNNSVTFLFPLIDYLS 943

[Close]

BLAST of CsaV3_2G004880 vs. ExPASy TrEMBL
Match: A0A1S4E019 (LOW QUALITY PROTEIN: TMV resistance protein N-like OS=Cucumis melo OX=3656 GN=LOC103495230 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 7.3e-18
Identity = 44/71 (61.97%), Postives = 55/71 (77.46%), Query Frame = 0


Query: 2   RDCTLLEEIPKVPEGVVCMDAGGCVLLTRFPDYIPDFISCEGN-LEDEKSFGEFKQLILM 61
           RDC LLEEIPKVP+G V M+A GC+LL RFPD I DFISC  N +E++  +   K+LILM
Sbjct: 856 RDCKLLEEIPKVPKGAVTMNASGCILLARFPDNILDFISCYDNYMEEKHEYKVIKELILM 915

Query: 62  NYDIPDWCRFE 72
           N DIPDWC+++
Sbjct: 916 NCDIPDWCQYK 926

The following BLAST results are available for this feature:

BLAST of CsaV3_2G004880 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60865.1	1.0e-74	100.00	hypothetical protein Csa_023466 [Cucumis sativus]	[more]
XP_016901487.1	3.7e-24	39.81	PREDICTED: TMV resistance protein N-like [Cucumis melo]	[more]
XP_031736691.1	9.4e-20	35.78	disease resistance-like protein DSC1 [Cucumis sativus]	[more]
KAE8651666.1	9.4e-20	35.78	hypothetical protein Csa_021160 [Cucumis sativus]	[more]
XP_011649005.1	1.4e-18	54.65	TMV resistance protein N isoform X1 [Cucumis sativus]	[more]

BLAST of CsaV3_2G004880 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_2G004880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LFN6	5.0e-75	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G020880 PE=4 SV=1	[more]
A0A1S4DZR7	1.8e-24	39.81	TMV resistance protein N-like OS=Cucumis melo OX=3656 GN=LOC103499509 PE=4 SV=1	[more]
A0A0A0LJ96	5.0e-19	36.00	TIR domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G059700 PE=4 SV...	[more]
A0A0A0LJK8	6.6e-19	54.65	TIR domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G075330 PE=4 SV...	[more]
A0A1S4E019	7.3e-18	61.97	LOW QUALITY PROTEIN: TMV resistance protein N-like OS=Cucumis melo OX=3656 GN=LO...	[more]

BLAST of CsaV3_2G004880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_2G004880.1	CsaV3_2G004880.1	mRNA