Cp4.1LG20g00040 (gene) Cucurbita pepo (MU‐CU‐16) v4.1

Overview
NameCp4.1LG20g00040
Typegene
OrganismCucurbita pepo (Cucurbita pepo (MU‐CU‐16) v4.1)
DescriptionUV-B-induced protein At3g17800, chloroplastic-like
LocationCp4.1LG20: 7734 .. 10045 (+)
RNA-Seq ExpressionCp4.1LG20g00040
SyntenyCp4.1LG20g00040
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTATGGTATTGTATGTTTTGTTTATTTTATTTTTTAAATTCAAAATTAGGAATGATCCAAACCTCTCAAAGATTGTGGTGGAGAATATGTGTTAATAGATTCTATCTAGTTTTCTTGATGTAATGCACAGAGAAGAAAGCCAAGAGTGTCCACAGAAATTAGGAGATGCCTACAAAGATCTTTTTTTTTTTTTTGCATGTCGTTGCCGTCTCTCCGTCCATTCATACACAAACATACGCGTGCCCAAACGTGTTTCACAATTTCATTCTATAAACATCTCCTCTCCACAAACTGCACCACACTCTCCAGTTTCTAGTTTCTTCTTCCCAGGTTTGTATCTTTCATACTCCCTCGCTCGATGAAACTATTCATTCAGTTTCGCTCCCTTCATCAATTTTCATATGCCTTTTGCAGATCCATTCGACACAACACTACACTACTCAGAGACACCGCCATGGAAGCAGCCACTGGTTCAACTTCAACCCTTGCCATTGGAATTGGATCGCCATTTCGGGACACCGACCCCAGGCCCCCTGCCTCCCGTTCCCTTTATTTTCCTTCCGAATCCCTCATCTCTGTTCCTGTAAGCTGGAATCATTTTTCTTGTATTTCTCACTCCATATTTATCAATCATTTCATAGTCAATTTCTGTGTATCTCATTTTGATATCTTCTGTTTTTTTCCCAACTTTCCGTTGTCGCATCGCAGCATTATCGGTCCTTCGTTTCTCCATCAAAACTTGGAAAGAAGTCGATTACTCTCCCCTGTAGTGGCCGGGGTCGGGGATTGGGATTCCCAATGGTTAAAGCGTCTCTGTCTCCGGATCCGGATGGTTCTGCTGCCCAAATTGCTCCACTTCGGCTCCAGTCTCCAATTGGCCAGTTTCTGTCTCAAATCCTGACTACCCATCCCCACCTTCTTCCTGCAGCCGTCGACCAGCAGCTTCAACAGCTGCAGACCCAACGTCATGCTGAAGAACTAACTCAAGAGCCCTCCGCTTCAGCTACTCATGACATTGTCTTGTACAGGTTAGTTCCGCATCCCTTAGAGGCCGAGTGTCAACAGGTAAGGATGGATCTAGGAACGAAAATGTTTTAACAGTCGATTGAAGCATATTGTTCGATTAGAAGAGCACCGAAGCTGATGAAGCTTGTTTTTTTTTTTTTTTGGACAACCCTGCTCACGTCGCTTAGCGTTTGAATTTGTTAGGAGGATTGCTGAGGTTAAGGCAATTGAAAGGAAGAGGGCCTTAGAAGAGATATTATATGCAATGGTGGTGCAACGATTCATGGACGCCGATGTTCCTCTAATACCAGCTGTTGCCCCGTCGTCTACGGATCCATATGGCCGAGTTGACACATGGGCACGAGATGATGAAAAGCTGGAGCGGCTTCACTCGTCGGAAGCAAGCGAAATGATTCAGAACCACCTAGCGCTGGTTTTGGGGAATCGGATTGGTGACTTTGCGTCAGTAGCGCAGATAAGCAAACTAAGAGTGGGGCAGGTGTATGCTGCGTCTGTGATGTATGGGTACTTCCTCAAGCGAGTGGATGAGAGATTTCAGCTTGAGAAGACTGTGAAAGTGCTACCAGCCAGTGCAACTGTTGAGGGCTCCTTCTCCAATGCACCAGTGCATCCTGAAATCTCTTCCATGGCAGCTGAACAGGGAGATGTTAGTCCTGGGGAGTCGGGTATGGGGATCAAGCCCTCCCGACTGCGAACATACGTAATGTCATTTGATGGGGAGACACTGCAGAGATTTGCCACAATAAGGTCAAAAGAGGCCGTTAGCATCATTGAGAGACACACGGAGGCCTTGTTTGGAAGACCCCAGATTGCAATCACCCCGCAAGGAACAGTAGATACCTCCAAAGACGAGCTTATCAAAATCAGCTTTGGTGGGTTGAAGAGACTAGTTTTGGAAGCCGTGACTTTCGGTTCTTTCCTGTGGGATGTGGAGACGTATGTGGACTCCAGGTATCATTTTGTCATGAATTGAGACATGAACTTACTCGTGCATTCTGGACAATGGATGCCTCCAGCGAATGTAATGTTAACTGTATATGTTTTGTTTAACTCAACCATTTACATTTTCACATTTTAAAATTATCTTATTTTTTTAAAGACAGAATGTCAAAATTGATGGACAGGAACTTTAAACGATACTTAACAAGTTCATATAATTTTAGAGGAGGAACTAAGTTACGTGAGAGATACAATTTAACAGAGTTTTGATATTTACATCTCAGAAGAAGAACGAAGTAACATGAATATGATACAAAGTTCAATATTTATTCAAATTTTTTTAGCA

mRNA sequence

ATTATGGTATTGTATGTTTTGTTTATTTTATTTTTTAAATTCAAAATTAGGAATGATCCAAACCTCTCAAAGATTGTGGTGGAGAATATGTGTTAATAGATTCTATCTAGTTTTCTTGATGTAATGCACAGAGAAGAAAGCCAAGAGTGTCCACAGAAATTAGGAGATGCCTACAAAGATCTTTTTTTTTTTTTTGCATGTCGTTGCCGTCTCTCCGTCCATTCATACACAAACATACGCGTGCCCAAACGTGTTTCACAATTTCATTCTATAAACATCTCCTCTCCACAAACTGCACCACACTCTCCAGTTTCTAGTTTCTTCTTCCCAGATCCATTCGACACAACACTACACTACTCAGAGACACCGCCATGGAAGCAGCCACTGGTTCAACTTCAACCCTTGCCATTGGAATTGGATCGCCATTTCGGGACACCGACCCCAGGCCCCCTGCCTCCCGTTCCCTTTATTTTCCTTCCGAATCCCTCATCTCTGTTCCTCATTATCGGTCCTTCGTTTCTCCATCAAAACTTGGAAAGAAGTCGATTACTCTCCCCTGTAGTGGCCGGGGTCGGGGATTGGGATTCCCAATGGTTAAAGCGTCTCTGTCTCCGGATCCGGATGGTTCTGCTGCCCAAATTGCTCCACTTCGGCTCCAGTCTCCAATTGGCCAGTTTCTGTCTCAAATCCTGACTACCCATCCCCACCTTCTTCCTGCAGCCGTCGACCAGCAGCTTCAACAGCTGCAGACCCAACGTCATGCTGAAGAACTAACTCAAGAGCCCTCCGCTTCAGCTACTCATGACATTGTCTTGTACAGGAGGATTGCTGAGGTTAAGGCAATTGAAAGGAAGAGGGCCTTAGAAGAGATATTATATGCAATGGTGGTGCAACGATTCATGGACGCCGATGTTCCTCTAATACCAGCTGTTGCCCCGTCGTCTACGGATCCATATGGCCGAGTTGACACATGGGCACGAGATGATGAAAAGCTGGAGCGGCTTCACTCGTCGGAAGCAAGCGAAATGATTCAGAACCACCTAGCGCTGGTTTTGGGGAATCGGATTGGTGACTTTGCGTCAGTAGCGCAGATAAGCAAACTAAGAGTGGGGCAGGTGTATGCTGCGTCTGTGATGTATGGGTACTTCCTCAAGCGAGTGGATGAGAGATTTCAGCTTGAGAAGACTGTGAAAGTGCTACCAGCCAGTGCAACTGTTGAGGGCTCCTTCTCCAATGCACCAGTGCATCCTGAAATCTCTTCCATGGCAGCTGAACAGGGAGATGTTAGTCCTGGGGAGTCGGGTATGGGGATCAAGCCCTCCCGACTGCGAACATACGTAATGTCATTTGATGGGGAGACACTGCAGAGATTTGCCACAATAAGGTCAAAAGAGGCCGTTAGCATCATTGAGAGACACACGGAGGCCTTGTTTGGAAGACCCCAGATTGCAATCACCCCGCAAGGAACAGTAGATACCTCCAAAGACGAGCTTATCAAAATCAGCTTTGGTGGGTTGAAGAGACTAGTTTTGGAAGCCGTGACTTTCGGTTCTTTCCTGTGGGATGTGGAGACGTATGTGGACTCCAGGTATCATTTTGTCATGAATTGAGACATGAACTTACTCGTGCATTCTGGACAATGGATGCCTCCAGCGAATGTAATGTTAACTGTATATGTTTTGTTTAACTCAACCATTTACATTTTCACATTTTAAAATTATCTTATTTTTTTAAAGACAGAATGTCAAAATTGATGGACAGGAACTTTAAACGATACTTAACAAGTTCATATAATTTTAGAGGAGGAACTAAGTTACGTGAGAGATACAATTTAACAGAGTTTTGATATTTACATCTCAGAAGAAGAACGAAGTAACATGAATATGATACAAAGTTCAATATTTATTCAAATTTTTTTAGCA

Coding sequence (CDS)

ATGGAAGCAGCCACTGGTTCAACTTCAACCCTTGCCATTGGAATTGGATCGCCATTTCGGGACACCGACCCCAGGCCCCCTGCCTCCCGTTCCCTTTATTTTCCTTCCGAATCCCTCATCTCTGTTCCTCATTATCGGTCCTTCGTTTCTCCATCAAAACTTGGAAAGAAGTCGATTACTCTCCCCTGTAGTGGCCGGGGTCGGGGATTGGGATTCCCAATGGTTAAAGCGTCTCTGTCTCCGGATCCGGATGGTTCTGCTGCCCAAATTGCTCCACTTCGGCTCCAGTCTCCAATTGGCCAGTTTCTGTCTCAAATCCTGACTACCCATCCCCACCTTCTTCCTGCAGCCGTCGACCAGCAGCTTCAACAGCTGCAGACCCAACGTCATGCTGAAGAACTAACTCAAGAGCCCTCCGCTTCAGCTACTCATGACATTGTCTTGTACAGGAGGATTGCTGAGGTTAAGGCAATTGAAAGGAAGAGGGCCTTAGAAGAGATATTATATGCAATGGTGGTGCAACGATTCATGGACGCCGATGTTCCTCTAATACCAGCTGTTGCCCCGTCGTCTACGGATCCATATGGCCGAGTTGACACATGGGCACGAGATGATGAAAAGCTGGAGCGGCTTCACTCGTCGGAAGCAAGCGAAATGATTCAGAACCACCTAGCGCTGGTTTTGGGGAATCGGATTGGTGACTTTGCGTCAGTAGCGCAGATAAGCAAACTAAGAGTGGGGCAGGTGTATGCTGCGTCTGTGATGTATGGGTACTTCCTCAAGCGAGTGGATGAGAGATTTCAGCTTGAGAAGACTGTGAAAGTGCTACCAGCCAGTGCAACTGTTGAGGGCTCCTTCTCCAATGCACCAGTGCATCCTGAAATCTCTTCCATGGCAGCTGAACAGGGAGATGTTAGTCCTGGGGAGTCGGGTATGGGGATCAAGCCCTCCCGACTGCGAACATACGTAATGTCATTTGATGGGGAGACACTGCAGAGATTTGCCACAATAAGGTCAAAAGAGGCCGTTAGCATCATTGAGAGACACACGGAGGCCTTGTTTGGAAGACCCCAGATTGCAATCACCCCGCAAGGAACAGTAGATACCTCCAAAGACGAGCTTATCAAAATCAGCTTTGGTGGGTTGAAGAGACTAGTTTTGGAAGCCGTGACTTTCGGTTCTTTCCTGTGGGATGTGGAGACGTATGTGGACTCCAGGTATCATTTTGTCATGAATTGA

Protein sequence

MEAATGSTSTLAIGIGSPFRDTDPRPPASRSLYFPSESLISVPHYRSFVSPSKLGKKSITLPCSGRGRGLGFPMVKASLSPDPDGSAAQIAPLRLQSPIGQFLSQILTTHPHLLPAAVDQQLQQLQTQRHAEELTQEPSASATHDIVLYRRIAEVKAIERKRALEEILYAMVVQRFMDADVPLIPAVAPSSTDPYGRVDTWARDDEKLERLHSSEASEMIQNHLALVLGNRIGDFASVAQISKLRVGQVYAASVMYGYFLKRVDERFQLEKTVKVLPASATVEGSFSNAPVHPEISSMAAEQGDVSPGESGMGIKPSRLRTYVMSFDGETLQRFATIRSKEAVSIIERHTEALFGRPQIAITPQGTVDTSKDELIKISFGGLKRLVLEAVTFGSFLWDVETYVDSRYHFVMN
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9LVJ04.8e-11865.71UV-B-induced protein At3g17800, chloroplastic OS=Arabidopsis thaliana OX=3702 GN... [more]
Match NameE-valueIdentityDescription
XP_023519193.19.96e-290100.00UV-B-induced protein At3g17800, chloroplastic-like [Cucurbita pepo subsp. pepo][more]
XP_022923896.16.72e-28899.51UV-B-induced protein At3g17800, chloroplastic-like [Cucurbita moschata][more]
KAG7020067.19.54e-28899.51UV-B-induced protein, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6584480.11.49e-28599.76UV-B-induced protein, chloroplastic, partial [Cucurbita argyrosperma subsp. soro... [more]
XP_023001153.12.06e-28298.06UV-B-induced protein At3g17800, chloroplastic-like [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
A0A6J1E7Z13.25e-28899.51UV-B-induced protein At3g17800, chloroplastic-like OS=Cucurbita moschata OX=3662... [more]
A0A6J1KPP29.97e-28398.06UV-B-induced protein At3g17800, chloroplastic-like OS=Cucurbita maxima OX=3661 G... [more]
A0A6J1C7Y68.61e-19976.53UV-B-induced protein At3g17800, chloroplastic-like isoform X1 OS=Momordica chara... [more]
A0A6J1CA191.14e-19376.19UV-B-induced protein At3g17800, chloroplastic-like isoform X2 OS=Momordica chara... [more]
A0A061FWL12.06e-16962.84Uncharacterized protein isoform 2 OS=Theobroma cacao OX=3641 GN=TCM_013026 PE=4 ... [more]
Match NameE-valueIdentityDescription
AT3G17800.13.4e-11965.71Protein of unknown function (DUF760) [more]
AT3G17800.23.4e-11965.71Protein of unknown function (DUF760) [more]
AT1G48450.16.0e-11663.87Protein of unknown function (DUF760) [more]
AT1G32160.13.3e-8246.02Protein of unknown function (DUF760) [more]
AT1G48450.22.5e-6966.18Protein of unknown function (DUF760) [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo (Zucchini) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008479Protein of unknown function DUF760PFAMPF05542DUF760coord: 147..272
e-value: 1.4E-21
score: 76.7
coord: 319..400
e-value: 4.4E-4
score: 20.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..15
NoneNo IPR availablePANTHERPTHR31808:SF4EXPRESSED PROTEINcoord: 73..412
IPR038925UV-B-induced protein At3g17800-likePANTHERPTHR31808EXPRESSED PROTEINcoord: 73..412

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG20g00040.1Cp4.1LG20g00040.1mRNA