CsaV3_7G003230 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G003230
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Pentatricopeptide repeat-containing protein
Location	chr7: 2408501 .. 2410236 (-)
RNA-Seq Expression	CsaV3_7G003230
Synteny	CsaV3_7G003230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAGATCAAACTAAAAAAAATATGAGGGTTGAGTTGATTCAAGGTAAAGATTGAGATTGATTAAAAAAAAACTATCATTAACCCGACCTAATCTGAAATACCAAACAATCTTATTTAAATTCATCAAAGTTGGGAATGTACCAATTTTAGAGATGGTTTGAAGAAGGAAGAAACTTGTAGAATATCAATAACTTTAGGTGTTGGCGAGGATTAGATATCGGAGCCTTCATCTTCGTTTGATGTGGTAAATGCCCAAACCACACGAAATAATCCCCTTTTACGCTGCTCTCCTCGACGCCTGCTCCTCCACCAACAACCTCCACACTCTCAAGCAAATCCACGCTCTTACCATAACACTTCATATCTCTCACCACCATTTCATTCGAACCAAGCTCGCTTCAACCTACGCTGCCTGCGCTCAACTCCCACAAGCCACCACCATCTTCTCCTTCGCCACTCGTCGCCCCACCTACCTCTTCAATACTCTCATCAGAGCCCACTCTTCTCTCCGTCTCTTCTCGCAGTCCCTCTCCATTTTCCGCCACATGCTCCTTTCTGGAAAATCCATTGATCGCCATACTCTCCCGCCTGTGCTTAAGTCATGTACCGGCCTCTCCTCCTTGCGCCTTGGCCGCCAGGTTCATGGGGCTCTTCTGATTAATGGCTTCTCTGCAGATTTGCCTAGTTTGAATGCTTTGATTACCATGTATGGCAAATGCGGGGATTTGGGTGTTGCACGGAAGGTGTTTGATGGAATGCCTGAGAGGAATGAGGTGTCGTGGTCTGCTTTGATGGCGGGTTATGGTGTTCATGGGATGTTTGGGGAGGTGTTTAGGTTGTTTGAGAGGATGGTGGAAGAAGGGCAAAAGCCGGATGAACTCACTTTTACATCTCTTCTCACCGCGTGTAGCCATGGAGGGTTGATTGAGAAAGGGAAGGAGTATTTTGGAATGATGAGAATGGAGTTTCATTTGAGGCCTGGATTGCAGCATTATACTTGCATGGTGGATTTGCTTGGGAGATCGGGGCAAGTGGAAGAAGCAGAGAAGTTGATAATGGAGATGGAGATCGAGCCTGATGAGGCTTTGTGGGGTGCCATGTTGAGTGCTTGTAGGATTCATGGGAAGGTCGATGTGGCTGATAGGGTGCAAAAACGGTTTATCAAACAACAATGAGCATACGAACTATTGTGTTAGTTATGTTTGATGGATGGTTTCACAAGTCTCCATTGATTCAATTTAAAAAAGAAAAAAAAAAAAAGATTTTCGACGTCCATTTGTCCAAAGAAACAGCACGAATTTACATTCTAGTACAACTTTATGTATGTAATCAAGTGGTGTTAGTAATTCCTCTCATGAATGGAGATTGAAAAGAATCGCTGATGGATTTTTTTTTGTTGAAAGAAGAAAACATGATATAGCCTTCTATTTGTATGCCTTGAACAAGGGGGGTTTGCAGTTAATGGATTTGCAGTTAATGGATTTGCAGATGAAAATGGTTTTCCAAGACATTTTCACCTTCATCAATTCAATATGGGAATAAAACCTAGGTGCCTATCAATTAAATCCCTTCAATTTAAATTGTTGCTTCAAAAATATAATTCAATGTGAGATAATAAAGTATTATGATTACAAAAGAATTGCAAATCTTTCAAGCATGGTAATAGTTCAAATTTGTTAAAATTGTATCCTTCTAAATAAAAAAGAGTTGAGTTGTACAATTGTTTCAACTTCTA

mRNA sequence

ATGCCCAAACCACACGAAATAATCCCCTTTTACGCTGCTCTCCTCGACGCCTGCTCCTCCACCAACAACCTCCACACTCTCAAGCAAATCCACGCTCTTACCATAACACTTCATATCTCTCACCACCATTTCATTCGAACCAAGCTCGCTTCAACCTACGCTGCCTGCGCTCAACTCCCACAAGCCACCACCATCTTCTCCTTCGCCACTCGTCGCCCCACCTACCTCTTCAATACTCTCATCAGAGCCCACTCTTCTCTCCGTCTCTTCTCGCAGTCCCTCTCCATTTTCCGCCACATGCTCCTTTCTGGAAAATCCATTGATCGCCATACTCTCCCGCCTGTGCTTAAGTCATGTACCGGCCTCTCCTCCTTGCGCCTTGGCCGCCAGGTTCATGGGGCTCTTCTGATTAATGGCTTCTCTGCAGATTTGCCTAGTTTGAATGCTTTGATTACCATGTATGGCAAATGCGGGGATTTGGGTGTTGCACGGAAGGTGTTTGATGGAATGCCTGAGAGGAATGAGGTGTCGTGGTCTGCTTTGATGGCGGGTTATGGTGTTCATGGGATGTTTGGGGAGGTGTTTAGGTTGTTTGAGAGGATGGTGGAAGAAGGGCAAAAGCCGGATGAACTCACTTTTACATCTCTTCTCACCGCGTGTAGCCATGGAGGGTTGATTGAGAAAGGGAAGGAGTATTTTGGAATGATGAGAATGGAGTTTCATTTGAGGCCTGGATTGCAGCATTATACTTGCATGGTGGATTTGCTTGGGAGATCGGGGCAAGTGGAAGAAGCAGAGAAGTTGATAATGGAGATGGAGATCGAGCCTGATGAGGCTTTGTGGGGTGCCATGTTGAGTGCTTGTAGGATTCATGGGAAGGTCGATGTGGCTGATAGGGTGCAAAAACGGTTTATCAAACAACAATGA

Coding sequence (CDS)

ATGCCCAAACCACACGAAATAATCCCCTTTTACGCTGCTCTCCTCGACGCCTGCTCCTCCACCAACAACCTCCACACTCTCAAGCAAATCCACGCTCTTACCATAACACTTCATATCTCTCACCACCATTTCATTCGAACCAAGCTCGCTTCAACCTACGCTGCCTGCGCTCAACTCCCACAAGCCACCACCATCTTCTCCTTCGCCACTCGTCGCCCCACCTACCTCTTCAATACTCTCATCAGAGCCCACTCTTCTCTCCGTCTCTTCTCGCAGTCCCTCTCCATTTTCCGCCACATGCTCCTTTCTGGAAAATCCATTGATCGCCATACTCTCCCGCCTGTGCTTAAGTCATGTACCGGCCTCTCCTCCTTGCGCCTTGGCCGCCAGGTTCATGGGGCTCTTCTGATTAATGGCTTCTCTGCAGATTTGCCTAGTTTGAATGCTTTGATTACCATGTATGGCAAATGCGGGGATTTGGGTGTTGCACGGAAGGTGTTTGATGGAATGCCTGAGAGGAATGAGGTGTCGTGGTCTGCTTTGATGGCGGGTTATGGTGTTCATGGGATGTTTGGGGAGGTGTTTAGGTTGTTTGAGAGGATGGTGGAAGAAGGGCAAAAGCCGGATGAACTCACTTTTACATCTCTTCTCACCGCGTGTAGCCATGGAGGGTTGATTGAGAAAGGGAAGGAGTATTTTGGAATGATGAGAATGGAGTTTCATTTGAGGCCTGGATTGCAGCATTATACTTGCATGGTGGATTTGCTTGGGAGATCGGGGCAAGTGGAAGAAGCAGAGAAGTTGATAATGGAGATGGAGATCGAGCCTGATGAGGCTTTGTGGGGTGCCATGTTGAGTGCTTGTAGGATTCATGGGAAGGTCGATGTGGCTGATAGGGTGCAAAAACGGTTTATCAAACAACAATGA

Protein sequence

MPKPHEIIPFYAALLDACSSTNNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLPQATTIFSFATRRPTYLFNTLIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCTGLSSLRLGRQVHGALLINGFSADLPSLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFGEVFRLFERMVEEGQKPDELTFTSLLTACSHGGLIEKGKEYFGMMRMEFHLRPGLQHYTCMVDLLGRSGQVEEAEKLIMEMEIEPDEALWGAMLSACRIHGKVDVADRVQKRFIKQQ*

Homology

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BLAST of CsaV3_7G003230 vs. NCBI nr
Match: XP_004144516.1 (pentatricopeptide repeat-containing protein At3g46790, chloroplastic [Cucumis sativus] >KGN43485.1 hypothetical protein Csa_020556 [Cucumis sativus])

HSP 1 Score: 623.2 bits (1606), Expect = 1.2e-174
Identity = 308/308 (100.00%), Postives = 308/308 (100.00%), Query Frame = 0


Query: 1   MPKPHEIIPFYAALLDACSSTNNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLP 60
           MPKPHEIIPFYAALLDACSSTNNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLP
Sbjct: 1   MPKPHEIIPFYAALLDACSSTNNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLP 60

Query: 61  QATTIFSFATRRPTYLFNTLIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCT 120
           QATTIFSFATRRPTYLFNTLIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCT
Sbjct: 61  QATTIFSFATRRPTYLFNTLIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCT 120

Query: 121 GLSSLRLGRQVHGALLINGFSADLPSLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180
           GLSSLRLGRQVHGALLINGFSADLPSLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA
Sbjct: 121 GLSSLRLGRQVHGALLINGFSADLPSLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180

Query: 181 LMAGYGVHGMFGEVFRLFERMVEEGQKPDELTFTSLLTACSHGGLIEKGKEYFGMMRMEF 240
           LMAGYGVHGMFGEVFRLFERMVEEGQKPDELTFTSLLTACSHGGLIEKGKEYFGMMRMEF
Sbjct: 181 LMAGYGVHGMFGEVFRLFERMVEEGQKPDELTFTSLLTACSHGGLIEKGKEYFGMMRMEF 240

Query: 241 HLRPGLQHYTCMVDLLGRSGQVEEAEKLIMEMEIEPDEALWGAMLSACRIHGKVDVADRV 300
           HLRPGLQHYTCMVDLLGRSGQVEEAEKLIMEMEIEPDEALWGAMLSACRIHGKVDVADRV
Sbjct: 241 HLRPGLQHYTCMVDLLGRSGQVEEAEKLIMEMEIEPDEALWGAMLSACRIHGKVDVADRV 300

Query: 301 QKRFIKQQ 309
           QKRFIKQQ
Sbjct: 301 QKRFIKQQ 308

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BLAST of CsaV3_7G003230 vs. NCBI nr
Match: KAA0059103.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYJ99627.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 593.2 bits (1528), Expect = 1.3e-165
Identity = 293/308 (95.13%), Postives = 298/308 (96.75%), Query Frame = 0


Query: 1   MPKPHEIIPFYAALLDACSSTNNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLP 60
           MPKPHEIIPFYAALL+ACSST NLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLP
Sbjct: 1   MPKPHEIIPFYAALLEACSSTKNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLP 60

Query: 61  QATTIFSFATRRPTYLFNTLIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCT 120
           QA TIFSFATRRPTYLFN LIRAHSSLRLFSQSLSIFRHMLLSGKS DRHT P VLKSCT
Sbjct: 61  QANTIFSFATRRPTYLFNALIRAHSSLRLFSQSLSIFRHMLLSGKSTDRHTFPLVLKSCT 120

Query: 121 GLSSLRLGRQVHGALLINGFSADLPSLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180
           GLSSLRLGRQVHGALLINGFSADLPSLNALITMY KCGDLGVARKVFDGMPERNEVSWSA
Sbjct: 121 GLSSLRLGRQVHGALLINGFSADLPSLNALITMYSKCGDLGVARKVFDGMPERNEVSWSA 180

Query: 181 LMAGYGVHGMFGEVFRLFERMVEEGQKPDELTFTSLLTACSHGGLIEKGKEYFGMMRMEF 240
           LMAGYGVHGMFGEVFRLFERMV+EGQ+PDELTFTSLLTACSHGGLIEKGKEYF  MRMEF
Sbjct: 181 LMAGYGVHGMFGEVFRLFERMVKEGQRPDELTFTSLLTACSHGGLIEKGKEYFRTMRMEF 240

Query: 241 HLRPGLQHYTCMVDLLGRSGQVEEAEKLIMEMEIEPDEALWGAMLSACRIHGKVDVADRV 300
           HLRPGLQHYTCMVDLLGR GQVEEAEKLIMEME+EPDEALWGAMLSACRIHG+VDVADRV
Sbjct: 241 HLRPGLQHYTCMVDLLGRLGQVEEAEKLIMEMEMEPDEALWGAMLSACRIHGRVDVADRV 300

Query: 301 QKRFIKQQ 309
           QKRFIKQQ
Sbjct: 301 QKRFIKQQ 308

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BLAST of CsaV3_7G003230 vs. NCBI nr
Match: XP_008455480.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucumis melo])

HSP 1 Score: 590.5 bits (1521), Expect = 8.4e-165
Identity = 292/308 (94.81%), Postives = 297/308 (96.43%), Query Frame = 0


Query: 1   MPKPHEIIPFYAALLDACSSTNNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLP 60
           MPKPHEIIPFYAALL+ACSST NLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLP
Sbjct: 1   MPKPHEIIPFYAALLEACSSTKNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLP 60

Query: 61  QATTIFSFATRRPTYLFNTLIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCT 120
           QA TIFSFATRRPTYLFN LIRAHSSLRLFSQSLSIFRHMLLSGKS DRHT P VLKSCT
Sbjct: 61  QANTIFSFATRRPTYLFNALIRAHSSLRLFSQSLSIFRHMLLSGKSTDRHTFPLVLKSCT 120

Query: 121 GLSSLRLGRQVHGALLINGFSADLPSLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180
           GLSSLRLGRQVHGALLINGFSADLPSLNALITMY KCGDLGVARKVFDGMPERN VSWSA
Sbjct: 121 GLSSLRLGRQVHGALLINGFSADLPSLNALITMYSKCGDLGVARKVFDGMPERNGVSWSA 180

Query: 181 LMAGYGVHGMFGEVFRLFERMVEEGQKPDELTFTSLLTACSHGGLIEKGKEYFGMMRMEF 240
           LMAGYGVHGMFGEVFRLFERMV+EGQ+PDELTFTSLLTACSHGGLIEKGKEYF  MRMEF
Sbjct: 181 LMAGYGVHGMFGEVFRLFERMVKEGQRPDELTFTSLLTACSHGGLIEKGKEYFRTMRMEF 240

Query: 241 HLRPGLQHYTCMVDLLGRSGQVEEAEKLIMEMEIEPDEALWGAMLSACRIHGKVDVADRV 300
           HLRPGLQHYTCMVDLLGR GQVEEAEKLIMEME+EPDEALWGAMLSACRIHG+VDVADRV
Sbjct: 241 HLRPGLQHYTCMVDLLGRLGQVEEAEKLIMEMEMEPDEALWGAMLSACRIHGRVDVADRV 300

Query: 301 QKRFIKQQ 309
           QKRFIKQQ
Sbjct: 301 QKRFIKQQ 308

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BLAST of CsaV3_7G003230 vs. NCBI nr
Match: XP_023520705.1 (pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 556.6 bits (1433), Expect = 1.3e-154
Identity = 274/307 (89.25%), Postives = 287/307 (93.49%), Query Frame = 0


Query: 1   MPKPHEIIPFYAALLDACSSTNNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLP 60
           MPKP +IIPFYAALL ACSST N  TLKQIHALTI L ISHH FIRTKLASTYAAC  LP
Sbjct: 1   MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLP 60

Query: 61  QATTIFSFATRRPTYLFNTLIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCT 120
           QATTIFSFATRRPT+LFN LIRAHSSLRLFSQSLSIFRHML+SGK IDRHTLPPVLKSCT
Sbjct: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLVSGKPIDRHTLPPVLKSCT 120

Query: 121 GLSSLRLGRQVHGALLINGFSADLPSLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180
           GLSSLRLGRQVHGA++INGFS DLP+LNALITMYGKCGDLGVARKVFDGMPERNEVSWSA
Sbjct: 121 GLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180

Query: 181 LMAGYGVHGMFGEVFRLFERMVEEGQKPDELTFTSLLTACSHGGLIEKGKEYFGMMRMEF 240
           LMAGYGVHGMFGEVF LFERMVEEGQKPDELTFT+LLTACSHGGLIE+GKEYFGMM+M F
Sbjct: 181 LMAGYGVHGMFGEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGF 240

Query: 241 HLRPGLQHYTCMVDLLGRSGQVEEAEKLIMEMEIEPDEALWGAMLSACRIHGKVDVADRV 300
            LRPGL+HYTCMVDLLGR GQVEEAEKLIMEMEIEPDEALWGA+L ACRIHGK +VADRV
Sbjct: 241 DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLGACRIHGKAEVADRV 300

Query: 301 QKRFIKQ 308
           Q RF+KQ
Sbjct: 301 QTRFMKQ 307

[Close]

BLAST of CsaV3_7G003230 vs. NCBI nr
Match: KAG6583697.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 556.6 bits (1433), Expect = 1.3e-154
Identity = 275/307 (89.58%), Postives = 286/307 (93.16%), Query Frame = 0


Query: 1   MPKPHEIIPFYAALLDACSSTNNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLP 60
           MPKP +IIPFYAALL ACSST N  TLKQIHALTI L ISHH FIRTKLASTYAAC  LP
Sbjct: 1   MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLP 60

Query: 61  QATTIFSFATRRPTYLFNTLIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCT 120
           QATTIFSFATRRPT+LFN LIRAHSSLRLFSQSLSIFRHMLLSGK IDRHTLPPV+KSCT
Sbjct: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLLSGKPIDRHTLPPVIKSCT 120

Query: 121 GLSSLRLGRQVHGALLINGFSADLPSLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180
           GLSSLRLGRQVHGA++INGFS DLP+LNALITMYGKCGDLGVARKVFDGMPERNEVSWSA
Sbjct: 121 GLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180

Query: 181 LMAGYGVHGMFGEVFRLFERMVEEGQKPDELTFTSLLTACSHGGLIEKGKEYFGMMRMEF 240
           LMAGYGVHGMF EVF LFERMVEEGQKPDELTFT+LLTACSHGGLIE+GKEYFGMM M F
Sbjct: 181 LMAGYGVHGMFSEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMEMGF 240

Query: 241 HLRPGLQHYTCMVDLLGRSGQVEEAEKLIMEMEIEPDEALWGAMLSACRIHGKVDVADRV 300
            LRPGL+HYTCMVDLLGR GQVEEAEKLIMEMEIEPDEALWGA+LSACRIHGK +VADRV
Sbjct: 241 DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKAEVADRV 300

Query: 301 QKRFIKQ 308
           Q RFIKQ
Sbjct: 301 QTRFIKQ 307

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BLAST of CsaV3_7G003230 vs. ExPASy Swiss-Prot
Match: Q9STF3 (Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CRR2 PE=2 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 2.3e-56
Identity = 113/299 (37.79%), Postives = 179/299 (59.87%), Query Frame = 0


Query: 11  YAALLDAC----SSTNNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLPQATTIF 70
           Y  +L AC     + N+L   K+IHA       S H +I T L   YA    +  A+ +F
Sbjct: 181 YTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVF 240

Query: 71  SFATRRPTYLFNTLIRAHSSLRLFSQSLSIFRHMLLSGK--SIDRHTLPPVLKSCTGLSS 130
                R    ++ +I  ++      ++L  FR M+   K  S +  T+  VL++C  L++
Sbjct: 241 GGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAA 300

Query: 131 LRLGRQVHGALLINGFSADLPSLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAG 190
           L  G+ +HG +L  G  + LP ++AL+TMYG+CG L V ++VFD M +R+ VSW++L++ 
Sbjct: 301 LEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISS 360

Query: 191 YGVHGMFGEVFRLFERMVEEGQKPDELTFTSLLTACSHGGLIEKGKEYFGMMRMEFHLRP 250
           YGVHG   +  ++FE M+  G  P  +TF S+L ACSH GL+E+GK  F  M  +  ++P
Sbjct: 361 YGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKP 420

Query: 251 GLQHYTCMVDLLGRSGQVEEAEKLIMEMEIEPDEALWGAMLSACRIHGKVDVADRVQKR 304
            ++HY CMVDLLGR+ +++EA K++ +M  EP   +WG++L +CRIHG V++A+R  +R
Sbjct: 421 QIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRR 479

[Close]

BLAST of CsaV3_7G003230 vs. ExPASy Swiss-Prot
Match: Q9LND4 (Pentatricopeptide repeat-containing protein At1g06140, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E61 PE=2 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 1.8e-53
Identity = 104/296 (35.14%), Postives = 170/296 (57.43%), Query Frame = 0


Query: 14  LLDACSSTNNLHTLKQIHALTI-TLHISHHHFIRTKLASTYAACAQLPQATTIFSFATRR 73
           L+ AC +       K +H ++I    I    +++  +   Y  C  L  A  +F  +  R
Sbjct: 216 LVKACGNVFAGKVGKCVHGVSIRRSFIDQSDYLQASIIDMYVKCRLLDNARKLFETSVDR 275

Query: 74  PTYLFNTLIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCTGLSSLRLGRQVH 133
              ++ TLI   +      ++  +FR ML      ++ TL  +L SC+ L SLR G+ VH
Sbjct: 276 NVVMWTTLISGFAKCERAVEAFDLFRQMLRESILPNQCTLAAILVSCSSLGSLRHGKSVH 335

Query: 134 GALLINGFSADLPSLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFG 193
           G ++ NG   D  +  + I MY +CG++ +AR VFD MPERN +SWS+++  +G++G+F 
Sbjct: 336 GYMIRNGIEMDAVNFTSFIDMYARCGNIQMARTVFDMMPERNVISWSSMINAFGINGLFE 395

Query: 194 EVFRLFERMVEEGQKPDELTFTSLLTACSHGGLIEKGKEYFGMMRMEFHLRPGLQHYTCM 253
           E    F +M  +   P+ +TF SLL+ACSH G +++G + F  M  ++ + P  +HY CM
Sbjct: 396 EALDCFHKMKSQNVVPNSVTFVSLLSACSHSGNVKEGWKQFESMTRDYGVVPEEEHYACM 455

Query: 254 VDLLGRSGQVEEAEKLIMEMEIEPDEALWGAMLSACRIHGKVDVADRVQKRFIKQQ 309
           VDLLGR+G++ EA+  I  M ++P  + WGA+LSACRIH +VD+A  + ++ +  +
Sbjct: 456 VDLLGRAGEIGEAKSFIDNMPVKPMASAWGALLSACRIHKEVDLAGEIAEKLLSME 511

[Close]

BLAST of CsaV3_7G003230 vs. ExPASy Swiss-Prot
Match: Q9SN39 (Pentatricopeptide repeat-containing protein DOT4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DOT4 PE=2 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 9.0e-53
Identity = 107/293 (36.52%), Postives = 173/293 (59.04%), Query Frame = 0


Query: 13  ALLDACSSTNNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLPQATTIFSFATRR 72
           A+L+ C+    L   K++H       +    F+   L   YA C  + +A  +FS    +
Sbjct: 402 AVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVK 461

Query: 73  PTYLFNTLIRAHSSLRLFSQSLSIFRHMLLSGK--SIDRHTLPPVLKSCTGLSSLRLGRQ 132
               +NT+I  +S     +++LS+F ++LL  K  S D  T+  VL +C  LS+   GR+
Sbjct: 462 DIISWNTIIGGYSKNCYANEALSLF-NLLLEEKRFSPDERTVACVLPACASLSAFDKGRE 521

Query: 133 VHGALLINGFSADLPSLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGM 192
           +HG ++ NG+ +D    N+L+ MY KCG L +A  +FD +  ++ VSW+ ++AGYG+HG 
Sbjct: 522 IHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGF 581

Query: 193 FGEVFRLFERMVEEGQKPDELTFTSLLTACSHGGLIEKGKEYFGMMRMEFHLRPGLQHYT 252
             E   LF +M + G + DE++F SLL ACSH GL+++G  +F +MR E  + P ++HY 
Sbjct: 582 GKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYA 641

Query: 253 CMVDLLGRSGQVEEAEKLIMEMEIEPDEALWGAMLSACRIHGKVDVADRVQKR 304
           C+VD+L R+G + +A + I  M I PD  +WGA+L  CRIH  V +A++V ++
Sbjct: 642 CIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEK 693

[Close]

BLAST of CsaV3_7G003230 vs. ExPASy Swiss-Prot
Match: Q0WN60 (Pentatricopeptide repeat-containing protein At1g18485 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H8 PE=2 SV=2)

HSP 1 Score: 208.8 bits (530), Expect = 9.0e-53
Identity = 104/295 (35.25%), Postives = 169/295 (57.29%), Query Frame = 0


Query: 13  ALLDACSSTNNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLPQATTIFSFATRR 72
           +LL ACS   +L   K++H   I   +    F+   + S Y  C +L     +F     +
Sbjct: 501 SLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDK 560

Query: 73  PTYLFNTLIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCTGLSSLRLGRQVH 132
               +NT+I  +       ++L +FR M+L G  +   ++ PV  +C+ L SLRLGR+ H
Sbjct: 561 SLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAH 620

Query: 133 GALLINGFSADLPSLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFG 192
              L +    D     +LI MY K G +  + KVF+G+ E++  SW+A++ GYG+HG+  
Sbjct: 621 AYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAK 680

Query: 193 EVFRLFERMVEEGQKPDELTFTSLLTACSHGGLIEKGKEYFGMMRMEFHLRPGLQHYTCM 252
           E  +LFE M   G  PD+LTF  +LTAC+H GLI +G  Y   M+  F L+P L+HY C+
Sbjct: 681 EAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACV 740

Query: 253 VDLLGRSGQVEEAEKLIM-EMEIEPDEALWGAMLSACRIHGKVDVADRVQKRFIK 307
           +D+LGR+GQ+++A +++  EM  E D  +W ++LS+CRIH  +++ ++V  +  +
Sbjct: 741 IDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFE 795

[Close]

BLAST of CsaV3_7G003230 vs. ExPASy Swiss-Prot
Match: P93005 (Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E19 PE=3 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 4.5e-52
Identity = 108/283 (38.16%), Postives = 162/283 (57.24%), Query Frame = 0


Query: 14  LLDACSSTNNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLPQATTIFSFATRRP 73
           +L+ACS    L   KQ+H+  + L    H F  T L   YA    L  A   F     R 
Sbjct: 328 VLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERD 387

Query: 74  TYLFNTLIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCTGLSSLRLGRQVHG 133
             L+ +LI  +       ++L ++R M  +G   +  T+  VLK+C+ L++L LG+QVHG
Sbjct: 388 VALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHG 447

Query: 134 ALLINGFSADLPSLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFGE 193
             + +GF  ++P  +AL TMY KCG L     VF   P ++ VSW+A+++G   +G   E
Sbjct: 448 HTIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDE 507

Query: 194 VFRLFERMVEEGQKPDELTFTSLLTACSHGGLIEKGKEYFGMMRMEFHLRPGLQHYTCMV 253
              LFE M+ EG +PD++TF ++++ACSH G +E+G  YF MM  +  L P + HY CMV
Sbjct: 508 ALELFEEMLAEGMEPDDVTFVNIISACSHKGFVERGWFYFNMMSDQIGLDPKVDHYACMV 567

Query: 254 DLLGRSGQVEEAEKLIMEMEIEPDEALWGAMLSACRIHGKVDV 297
           DLL R+GQ++EA++ I    I+    LW  +LSAC+ HGK ++
Sbjct: 568 DLLSRAGQLKEAKEFIESANIDHGLCLWRILLSACKNHGKCEL 610

[Close]

BLAST of CsaV3_7G003230 vs. ExPASy TrEMBL
Match: A0A0A0K1F7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G041310 PE=4 SV=1)

HSP 1 Score: 623.2 bits (1606), Expect = 5.7e-175
Identity = 308/308 (100.00%), Postives = 308/308 (100.00%), Query Frame = 0


Query: 1   MPKPHEIIPFYAALLDACSSTNNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLP 60
           MPKPHEIIPFYAALLDACSSTNNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLP
Sbjct: 1   MPKPHEIIPFYAALLDACSSTNNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLP 60

Query: 61  QATTIFSFATRRPTYLFNTLIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCT 120
           QATTIFSFATRRPTYLFNTLIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCT
Sbjct: 61  QATTIFSFATRRPTYLFNTLIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCT 120

Query: 121 GLSSLRLGRQVHGALLINGFSADLPSLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180
           GLSSLRLGRQVHGALLINGFSADLPSLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA
Sbjct: 121 GLSSLRLGRQVHGALLINGFSADLPSLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180

Query: 181 LMAGYGVHGMFGEVFRLFERMVEEGQKPDELTFTSLLTACSHGGLIEKGKEYFGMMRMEF 240
           LMAGYGVHGMFGEVFRLFERMVEEGQKPDELTFTSLLTACSHGGLIEKGKEYFGMMRMEF
Sbjct: 181 LMAGYGVHGMFGEVFRLFERMVEEGQKPDELTFTSLLTACSHGGLIEKGKEYFGMMRMEF 240

Query: 241 HLRPGLQHYTCMVDLLGRSGQVEEAEKLIMEMEIEPDEALWGAMLSACRIHGKVDVADRV 300
           HLRPGLQHYTCMVDLLGRSGQVEEAEKLIMEMEIEPDEALWGAMLSACRIHGKVDVADRV
Sbjct: 241 HLRPGLQHYTCMVDLLGRSGQVEEAEKLIMEMEIEPDEALWGAMLSACRIHGKVDVADRV 300

Query: 301 QKRFIKQQ 309
           QKRFIKQQ
Sbjct: 301 QKRFIKQQ 308

[Close]

BLAST of CsaV3_7G003230 vs. ExPASy TrEMBL
Match: A0A5A7UT42 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold786G00080 PE=4 SV=1)

HSP 1 Score: 593.2 bits (1528), Expect = 6.3e-166
Identity = 293/308 (95.13%), Postives = 298/308 (96.75%), Query Frame = 0


Query: 1   MPKPHEIIPFYAALLDACSSTNNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLP 60
           MPKPHEIIPFYAALL+ACSST NLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLP
Sbjct: 1   MPKPHEIIPFYAALLEACSSTKNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLP 60

Query: 61  QATTIFSFATRRPTYLFNTLIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCT 120
           QA TIFSFATRRPTYLFN LIRAHSSLRLFSQSLSIFRHMLLSGKS DRHT P VLKSCT
Sbjct: 61  QANTIFSFATRRPTYLFNALIRAHSSLRLFSQSLSIFRHMLLSGKSTDRHTFPLVLKSCT 120

Query: 121 GLSSLRLGRQVHGALLINGFSADLPSLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180
           GLSSLRLGRQVHGALLINGFSADLPSLNALITMY KCGDLGVARKVFDGMPERNEVSWSA
Sbjct: 121 GLSSLRLGRQVHGALLINGFSADLPSLNALITMYSKCGDLGVARKVFDGMPERNEVSWSA 180

Query: 181 LMAGYGVHGMFGEVFRLFERMVEEGQKPDELTFTSLLTACSHGGLIEKGKEYFGMMRMEF 240
           LMAGYGVHGMFGEVFRLFERMV+EGQ+PDELTFTSLLTACSHGGLIEKGKEYF  MRMEF
Sbjct: 181 LMAGYGVHGMFGEVFRLFERMVKEGQRPDELTFTSLLTACSHGGLIEKGKEYFRTMRMEF 240

Query: 241 HLRPGLQHYTCMVDLLGRSGQVEEAEKLIMEMEIEPDEALWGAMLSACRIHGKVDVADRV 300
           HLRPGLQHYTCMVDLLGR GQVEEAEKLIMEME+EPDEALWGAMLSACRIHG+VDVADRV
Sbjct: 241 HLRPGLQHYTCMVDLLGRLGQVEEAEKLIMEMEMEPDEALWGAMLSACRIHGRVDVADRV 300

Query: 301 QKRFIKQQ 309
           QKRFIKQQ
Sbjct: 301 QKRFIKQQ 308

[Close]

BLAST of CsaV3_7G003230 vs. ExPASy TrEMBL
Match: A0A1S3C0K0 (pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103495634 PE=4 SV=1)

HSP 1 Score: 590.5 bits (1521), Expect = 4.1e-165
Identity = 292/308 (94.81%), Postives = 297/308 (96.43%), Query Frame = 0


Query: 1   MPKPHEIIPFYAALLDACSSTNNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLP 60
           MPKPHEIIPFYAALL+ACSST NLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLP
Sbjct: 1   MPKPHEIIPFYAALLEACSSTKNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLP 60

Query: 61  QATTIFSFATRRPTYLFNTLIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCT 120
           QA TIFSFATRRPTYLFN LIRAHSSLRLFSQSLSIFRHMLLSGKS DRHT P VLKSCT
Sbjct: 61  QANTIFSFATRRPTYLFNALIRAHSSLRLFSQSLSIFRHMLLSGKSTDRHTFPLVLKSCT 120

Query: 121 GLSSLRLGRQVHGALLINGFSADLPSLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180
           GLSSLRLGRQVHGALLINGFSADLPSLNALITMY KCGDLGVARKVFDGMPERN VSWSA
Sbjct: 121 GLSSLRLGRQVHGALLINGFSADLPSLNALITMYSKCGDLGVARKVFDGMPERNGVSWSA 180

Query: 181 LMAGYGVHGMFGEVFRLFERMVEEGQKPDELTFTSLLTACSHGGLIEKGKEYFGMMRMEF 240
           LMAGYGVHGMFGEVFRLFERMV+EGQ+PDELTFTSLLTACSHGGLIEKGKEYF  MRMEF
Sbjct: 181 LMAGYGVHGMFGEVFRLFERMVKEGQRPDELTFTSLLTACSHGGLIEKGKEYFRTMRMEF 240

Query: 241 HLRPGLQHYTCMVDLLGRSGQVEEAEKLIMEMEIEPDEALWGAMLSACRIHGKVDVADRV 300
           HLRPGLQHYTCMVDLLGR GQVEEAEKLIMEME+EPDEALWGAMLSACRIHG+VDVADRV
Sbjct: 241 HLRPGLQHYTCMVDLLGRLGQVEEAEKLIMEMEMEPDEALWGAMLSACRIHGRVDVADRV 300

Query: 301 QKRFIKQQ 309
           QKRFIKQQ
Sbjct: 301 QKRFIKQQ 308

[Close]

BLAST of CsaV3_7G003230 vs. ExPASy TrEMBL
Match: A0A6J1I7X0 (pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111471666 PE=4 SV=1)

HSP 1 Score: 554.3 bits (1427), Expect = 3.2e-154
Identity = 274/309 (88.67%), Postives = 289/309 (93.53%), Query Frame = 0


Query: 1   MPKPHEIIPFYAALLDACSSTNNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLP 60
           MPKP +IIPFYAALL ACSST N HTLKQIHALTI L ISHH FIRTKLASTYAAC  LP
Sbjct: 1   MPKPQDIIPFYAALLQACSSTKNHHTLKQIHALTIRLGISHHDFIRTKLASTYAACDHLP 60

Query: 61  QATTIFSFATRRPTYLFNTLIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCT 120
           QATTIFSFATRRPT+LFN LIRAHSSLRLFSQSLSIFRHMLLSGK IDRHTLPPVLKSCT
Sbjct: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRHMLLSGKPIDRHTLPPVLKSCT 120

Query: 121 GLSSLRLGRQVHGALLINGFSADLPSLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180
           GLSSLRLGRQVHG ++INGFS DLP+LNALITMYGKCGDLG+ARKVFDGMPERNEVSWSA
Sbjct: 121 GLSSLRLGRQVHGFVVINGFSTDLPNLNALITMYGKCGDLGIARKVFDGMPERNEVSWSA 180

Query: 181 LMAGYGVHGMFGEVFRLFERMVEEGQKPDELTFTSLLTACSHGGLIEKGKEYFGMMRMEF 240
           LMAGYGVHGMFGEVF LFERMVEEGQKPDELTFT+LLTACSHGGLIE+GKEYFGMM+M F
Sbjct: 181 LMAGYGVHGMFGEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMKMGF 240

Query: 241 HLRPGLQHYTCMVDLLGRSGQVEEAEKLI--MEMEIEPDEALWGAMLSACRIHGKVDVAD 300
           +L+PGL+HYTCMVDLLGR GQVEEAEKLI  MEMEIEPDEALWGA+LSACRIHGK +VAD
Sbjct: 241 NLKPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEMEIEPDEALWGALLSACRIHGKAEVAD 300

Query: 301 RVQKRFIKQ 308
           RVQ RF+KQ
Sbjct: 301 RVQTRFMKQ 309

[Close]

BLAST of CsaV3_7G003230 vs. ExPASy TrEMBL
Match: A0A6J1EHW3 (pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111434233 PE=4 SV=1)

HSP 1 Score: 551.2 bits (1419), Expect = 2.7e-153
Identity = 273/307 (88.93%), Postives = 286/307 (93.16%), Query Frame = 0


Query: 1   MPKPHEIIPFYAALLDACSSTNNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLP 60
           MPKP +IIPFYAALL ACSST N  TLKQIHALTI L ISHH FIRTKLASTYAAC  LP
Sbjct: 1   MPKPQDIIPFYAALLQACSSTKNHRTLKQIHALTIRLGISHHDFIRTKLASTYAACHHLP 60

Query: 61  QATTIFSFATRRPTYLFNTLIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCT 120
           QATTIFSFATRRPT+LFN LIRAHSSLRLFSQSLSIFR MLLSGK IDRHTLPPV+KSCT
Sbjct: 61  QATTIFSFATRRPTFLFNALIRAHSSLRLFSQSLSIFRRMLLSGKPIDRHTLPPVIKSCT 120

Query: 121 GLSSLRLGRQVHGALLINGFSADLPSLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180
           GLSSLRLGRQVHGA++INGFS DLP+LNALITMYGKCGDLGVARKVFDGMPERNEVSWSA
Sbjct: 121 GLSSLRLGRQVHGAVVINGFSTDLPNLNALITMYGKCGDLGVARKVFDGMPERNEVSWSA 180

Query: 181 LMAGYGVHGMFGEVFRLFERMVEEGQKPDELTFTSLLTACSHGGLIEKGKEYFGMMRMEF 240
           LMAGYGVHGMF EVF LFERMVEEGQKPDELTFT+LLTACSHGGLIE+GKEYFGMM+M F
Sbjct: 181 LMAGYGVHGMFDEVFGLFERMVEEGQKPDELTFTALLTACSHGGLIERGKEYFGMMQMGF 240

Query: 241 HLRPGLQHYTCMVDLLGRSGQVEEAEKLIMEMEIEPDEALWGAMLSACRIHGKVDVADRV 300
            LRPGL+HYTCMVDLLGR GQVEEAEKLIMEMEIEPDEALWGA+LSACRIHGK +VADRV
Sbjct: 241 DLRPGLEHYTCMVDLLGRVGQVEEAEKLIMEMEIEPDEALWGALLSACRIHGKGEVADRV 300

Query: 301 QKRFIKQ 308
           Q RF+KQ
Sbjct: 301 QTRFMKQ 307

[Close]

BLAST of CsaV3_7G003230 vs. TAIR 10
Match: AT3G46790.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 220.7 bits (561), Expect = 1.6e-57
Identity = 113/299 (37.79%), Postives = 179/299 (59.87%), Query Frame = 0


Query: 11  YAALLDAC----SSTNNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLPQATTIF 70
           Y  +L AC     + N+L   K+IHA       S H +I T L   YA    +  A+ +F
Sbjct: 181 YTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVF 240

Query: 71  SFATRRPTYLFNTLIRAHSSLRLFSQSLSIFRHMLLSGK--SIDRHTLPPVLKSCTGLSS 130
                R    ++ +I  ++      ++L  FR M+   K  S +  T+  VL++C  L++
Sbjct: 241 GGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAA 300

Query: 131 LRLGRQVHGALLINGFSADLPSLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAG 190
           L  G+ +HG +L  G  + LP ++AL+TMYG+CG L V ++VFD M +R+ VSW++L++ 
Sbjct: 301 LEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISS 360

Query: 191 YGVHGMFGEVFRLFERMVEEGQKPDELTFTSLLTACSHGGLIEKGKEYFGMMRMEFHLRP 250
           YGVHG   +  ++FE M+  G  P  +TF S+L ACSH GL+E+GK  F  M  +  ++P
Sbjct: 361 YGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKP 420

Query: 251 GLQHYTCMVDLLGRSGQVEEAEKLIMEMEIEPDEALWGAMLSACRIHGKVDVADRVQKR 304
            ++HY CMVDLLGR+ +++EA K++ +M  EP   +WG++L +CRIHG V++A+R  +R
Sbjct: 421 QIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRR 479

[Close]

BLAST of CsaV3_7G003230 vs. TAIR 10
Match: AT1G06140.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 211.1 bits (536), Expect = 1.3e-54
Identity = 104/296 (35.14%), Postives = 170/296 (57.43%), Query Frame = 0


Query: 14  LLDACSSTNNLHTLKQIHALTI-TLHISHHHFIRTKLASTYAACAQLPQATTIFSFATRR 73
           L+ AC +       K +H ++I    I    +++  +   Y  C  L  A  +F  +  R
Sbjct: 216 LVKACGNVFAGKVGKCVHGVSIRRSFIDQSDYLQASIIDMYVKCRLLDNARKLFETSVDR 275

Query: 74  PTYLFNTLIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCTGLSSLRLGRQVH 133
              ++ TLI   +      ++  +FR ML      ++ TL  +L SC+ L SLR G+ VH
Sbjct: 276 NVVMWTTLISGFAKCERAVEAFDLFRQMLRESILPNQCTLAAILVSCSSLGSLRHGKSVH 335

Query: 134 GALLINGFSADLPSLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFG 193
           G ++ NG   D  +  + I MY +CG++ +AR VFD MPERN +SWS+++  +G++G+F 
Sbjct: 336 GYMIRNGIEMDAVNFTSFIDMYARCGNIQMARTVFDMMPERNVISWSSMINAFGINGLFE 395

Query: 194 EVFRLFERMVEEGQKPDELTFTSLLTACSHGGLIEKGKEYFGMMRMEFHLRPGLQHYTCM 253
           E    F +M  +   P+ +TF SLL+ACSH G +++G + F  M  ++ + P  +HY CM
Sbjct: 396 EALDCFHKMKSQNVVPNSVTFVSLLSACSHSGNVKEGWKQFESMTRDYGVVPEEEHYACM 455

Query: 254 VDLLGRSGQVEEAEKLIMEMEIEPDEALWGAMLSACRIHGKVDVADRVQKRFIKQQ 309
           VDLLGR+G++ EA+  I  M ++P  + WGA+LSACRIH +VD+A  + ++ +  +
Sbjct: 456 VDLLGRAGEIGEAKSFIDNMPVKPMASAWGALLSACRIHKEVDLAGEIAEKLLSME 511

[Close]

BLAST of CsaV3_7G003230 vs. TAIR 10
Match: AT1G18485.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 208.8 bits (530), Expect = 6.4e-54
Identity = 104/295 (35.25%), Postives = 169/295 (57.29%), Query Frame = 0


Query: 13  ALLDACSSTNNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLPQATTIFSFATRR 72
           +LL ACS   +L   K++H   I   +    F+   + S Y  C +L     +F     +
Sbjct: 501 SLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDK 560

Query: 73  PTYLFNTLIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCTGLSSLRLGRQVH 132
               +NT+I  +       ++L +FR M+L G  +   ++ PV  +C+ L SLRLGR+ H
Sbjct: 561 SLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAH 620

Query: 133 GALLINGFSADLPSLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFG 192
              L +    D     +LI MY K G +  + KVF+G+ E++  SW+A++ GYG+HG+  
Sbjct: 621 AYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAK 680

Query: 193 EVFRLFERMVEEGQKPDELTFTSLLTACSHGGLIEKGKEYFGMMRMEFHLRPGLQHYTCM 252
           E  +LFE M   G  PD+LTF  +LTAC+H GLI +G  Y   M+  F L+P L+HY C+
Sbjct: 681 EAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACV 740

Query: 253 VDLLGRSGQVEEAEKLIM-EMEIEPDEALWGAMLSACRIHGKVDVADRVQKRFIK 307
           +D+LGR+GQ+++A +++  EM  E D  +W ++LS+CRIH  +++ ++V  +  +
Sbjct: 741 IDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFE 795

[Close]

BLAST of CsaV3_7G003230 vs. TAIR 10
Match: AT4G18750.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 208.8 bits (530), Expect = 6.4e-54
Identity = 107/293 (36.52%), Postives = 173/293 (59.04%), Query Frame = 0


Query: 13  ALLDACSSTNNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLPQATTIFSFATRR 72
           A+L+ C+    L   K++H       +    F+   L   YA C  + +A  +FS    +
Sbjct: 402 AVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVK 461

Query: 73  PTYLFNTLIRAHSSLRLFSQSLSIFRHMLLSGK--SIDRHTLPPVLKSCTGLSSLRLGRQ 132
               +NT+I  +S     +++LS+F ++LL  K  S D  T+  VL +C  LS+   GR+
Sbjct: 462 DIISWNTIIGGYSKNCYANEALSLF-NLLLEEKRFSPDERTVACVLPACASLSAFDKGRE 521

Query: 133 VHGALLINGFSADLPSLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGM 192
           +HG ++ NG+ +D    N+L+ MY KCG L +A  +FD +  ++ VSW+ ++AGYG+HG 
Sbjct: 522 IHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGF 581

Query: 193 FGEVFRLFERMVEEGQKPDELTFTSLLTACSHGGLIEKGKEYFGMMRMEFHLRPGLQHYT 252
             E   LF +M + G + DE++F SLL ACSH GL+++G  +F +MR E  + P ++HY 
Sbjct: 582 GKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYA 641

Query: 253 CMVDLLGRSGQVEEAEKLIMEMEIEPDEALWGAMLSACRIHGKVDVADRVQKR 304
           C+VD+L R+G + +A + I  M I PD  +WGA+L  CRIH  V +A++V ++
Sbjct: 642 CIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEK 693

[Close]

BLAST of CsaV3_7G003230 vs. TAIR 10
Match: AT2G33680.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 206.5 bits (524), Expect = 3.2e-53
Identity = 108/283 (38.16%), Postives = 162/283 (57.24%), Query Frame = 0


Query: 14  LLDACSSTNNLHTLKQIHALTITLHISHHHFIRTKLASTYAACAQLPQATTIFSFATRRP 73
           +L+ACS    L   KQ+H+  + L    H F  T L   YA    L  A   F     R 
Sbjct: 328 VLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERD 387

Query: 74  TYLFNTLIRAHSSLRLFSQSLSIFRHMLLSGKSIDRHTLPPVLKSCTGLSSLRLGRQVHG 133
             L+ +LI  +       ++L ++R M  +G   +  T+  VLK+C+ L++L LG+QVHG
Sbjct: 388 VALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHG 447

Query: 134 ALLINGFSADLPSLNALITMYGKCGDLGVARKVFDGMPERNEVSWSALMAGYGVHGMFGE 193
             + +GF  ++P  +AL TMY KCG L     VF   P ++ VSW+A+++G   +G   E
Sbjct: 448 HTIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDE 507

Query: 194 VFRLFERMVEEGQKPDELTFTSLLTACSHGGLIEKGKEYFGMMRMEFHLRPGLQHYTCMV 253
              LFE M+ EG +PD++TF ++++ACSH G +E+G  YF MM  +  L P + HY CMV
Sbjct: 508 ALELFEEMLAEGMEPDDVTFVNIISACSHKGFVERGWFYFNMMSDQIGLDPKVDHYACMV 567

Query: 254 DLLGRSGQVEEAEKLIMEMEIEPDEALWGAMLSACRIHGKVDV 297
           DLL R+GQ++EA++ I    I+    LW  +LSAC+ HGK ++
Sbjct: 568 DLLSRAGQLKEAKEFIESANIDHGLCLWRILLSACKNHGKCEL 610

The following BLAST results are available for this feature:

BLAST of CsaV3_7G003230 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004144516.1	1.2e-174	100.00	pentatricopeptide repeat-containing protein At3g46790, chloroplastic [Cucumis sa...	[more]
KAA0059103.1	1.3e-165	95.13	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYJ99627...	[more]
XP_008455480.1	8.4e-165	94.81	PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic-...	[more]
XP_023520705.1	1.3e-154	89.25	pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like [Cucur...	[more]
KAG6583697.1	1.3e-154	89.58	Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a...	[more]

BLAST of CsaV3_7G003230 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9STF3	2.3e-56	37.79	Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidop...	[more]
Q9LND4	1.8e-53	35.14	Pentatricopeptide repeat-containing protein At1g06140, mitochondrial OS=Arabidop...	[more]
Q9SN39	9.0e-53	36.52	Pentatricopeptide repeat-containing protein DOT4, chloroplastic OS=Arabidopsis t...	[more]
Q0WN60	9.0e-53	35.25	Pentatricopeptide repeat-containing protein At1g18485 OS=Arabidopsis thaliana OX...	[more]
P93005	4.5e-52	38.16	Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana OX...	[more]

BLAST of CsaV3_7G003230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K1F7	5.7e-175	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G041310 PE=4 SV=1	[more]
A0A5A7UT42	6.3e-166	95.13	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3C0K0	4.1e-165	94.81	pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like OS=Cuc...	[more]
A0A6J1I7X0	3.2e-154	88.67	pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like OS=Cuc...	[more]
A0A6J1EHW3	2.7e-153	88.93	pentatricopeptide repeat-containing protein At3g46790, chloroplastic-like OS=Cuc...	[more]

BLAST of CsaV3_7G003230 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G46790.1	1.6e-57	37.79	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G06140.1	1.3e-54	35.14	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G18485.1	6.4e-54	35.25	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G18750.1	6.4e-54	36.52	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT2G33680.1	3.2e-53	38.16	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 174..221 e-value: 1.8E-11 score: 44.1
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 76..104 e-value: 0.027 score: 14.7 coord: 249..273 e-value: 4.7E-5 score: 23.3
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 249..273 e-value: 1.4E-4 score: 19.8 coord: 176..210 e-value: 7.7E-8 score: 30.1 coord: 147..174 e-value: 5.4E-4 score: 18.0 coord: 212..238 e-value: 0.0015 score: 16.6
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 143..173 score: 8.637562
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 174..208 score: 12.024604
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 237..308 e-value: 7.5E-11 score: 44.0
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 8..122 e-value: 3.4E-7 score: 32.0
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 123..228 e-value: 2.4E-25 score: 90.9
None	No IPR available	PANTHER	PTHR47929	FAMILY NOT NAMED	coord: 108..306 coord: 15..185
None	No IPR available	PANTHER	PTHR47929:SF22	SUBFAMILY NOT NAMED	coord: 108..306 coord: 15..185

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G003230.1	CsaV3_7G003230.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding