CsaV3_7G003100 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G003100
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	protein E6-like
Location	chr7: 2316097 .. 2317706 (-)
RNA-Seq Expression	CsaV3_7G003100
Synteny	CsaV3_7G003100

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTAAAGAGAACTTGTAATTATATAACAAAAATAGTATTTGAATTAAATAGAAAGATGAAAGTGTAATGTATAGCAAATTTAAAAGTTAGAAAGGTAAAATTGGAATTAATAATATGGAAATGTTTGTAGTTTTGGGGAAGAAAAATTAGGTGCGCCTATAATAGTGGACATTCAAGTGCTTTCCACATGCAGCGTCAGCGTGCACTCCATCTTTCCATTACCATTATGTTCTCCTCTGTCCCACACTTCCTTCTTCTTCTTCTTCTTCTTCTTCATCTAATTCCCTCAATCCCCGCATAATTCATCGCCTCCATAATCACACAAACAACAATTCCAAAGTTCCCATCAACCCCTTTCTCTCTCTTTTTATATAAATTCACCCATTACGATCCTTCCATTTCCATACCTTTTTTGTTTTCTTTTTGTTTTGCTTCAGTAGCCATGGCAGCAGCTTCAGCTTCCGCTACTTTCAAGTTCAACCATCTCTCCTTCTCCTTCTTCTTCTTCTTCCTTCTCCTTATCTCCTCTGTTCAAATTGAAGCTAGAGTCAACAAATTCTTCAGTAAATTCATTCATACAGATCACGAGGTTGTTCCCAACACACTTTCCCCGGCGCCCCTCTCTGTTCCGCCTGAGACTTCTCCATCTCTTGCACCGACACCGGCTCCTGCGCCATTTTTCGACGAATCCCAGAATGCTTACGGTCTATACGGCAGTGATCCCGATGCCGATGAAAACACTCGGACGATTACCGACGTGGAAGAGGAGATTCTCGGAGGAGAAGGCGATCAGGACGAGGGGAATGACAAATCTGGGTTTCCGATGAACAATTTTGTTGAAACGAGAAATGAGGAGGAGCAGTACCAGAACAAGAACTATGAGAACAACAATGGGTTTAGAAATTCCGAGTACGATAACCGCAATGAGTACAGAAATTCGGAGTACGAGAACAATAACAATGAGGGTAGAAATTACGAGGACCAGAGGAATTTTGAAGAGGGCGGGTACAGGAGGAGCCGATTCGAACCGACAGAGCAGGAAGGGATGAGCGATACCAGATTCATGGAGAATGGAAGGTATTTTCATGACATTAACTCGAGGAATGATGAAGAAAATGGATCGTACGGAAGTAAGAAGAAGTATCCAAAGTACGAGTTCGATTCAATGGAGGAGTATGAGAGGAGTGAGGGATTGCTTCCTTGATGAAGAGAAGGGGGGATTTTAATTAGGGTTTAACTTAAATCTATGGAAGTTTTTTCATATATATGTTGTGTGTGTGTTTATTATCTTTGAGTTGTGATTGTTTTTGCACAACTTGAATGGATATGTTGTTCTTGGATGTGATTTGAATGGAAGGGAAGAAAAAAACATGGTGTTTCCATTTTGGAAATAAATTCCATAATGAGATTTTATAGATTATATTCAATGTTTACATTTCTTTACAAAACTTGGTACGTGTGAAACTATACTTTGAATTTACGAGTTGGTACATCTCAATTTGTGGAAGAACAAAAATTAAAAGCTATCAGTTCTTTAATGTTAAGTCTAAATGTATATGTCTAAGTTCCCTACAAGAAAAATTAAAAGCTATTAAGTTATTCGTAAGAAG

mRNA sequence

ATGGCAGCAGCTTCAGCTTCCGCTACTTTCAAGTTCAACCATCTCTCCTTCTCCTTCTTCTTCTTCTTCCTTCTCCTTATCTCCTCTGTTCAAATTGAAGCTAGAGTCAACAAATTCTTCAGTAAATTCATTCATACAGATCACGAGGTTGTTCCCAACACACTTTCCCCGGCGCCCCTCTCTGTTCCGCCTGAGACTTCTCCATCTCTTGCACCGACACCGGCTCCTGCGCCATTTTTCGACGAATCCCAGAATGCTTACGGTCTATACGGCAGTGATCCCGATGCCGATGAAAACACTCGGACGATTACCGACGTGGAAGAGGAGATTCTCGGAGGAGAAGGCGATCAGGACGAGGGGAATGACAAATCTGGGTTTCCGATGAACAATTTTGTTGAAACGAGAAATGAGGAGGAGCAGTACCAGAACAAGAACTATGAGAACAACAATGGGTTTAGAAATTCCGAGTACGATAACCGCAATGAGTACAGAAATTCGGAGTACGAGAACAATAACAATGAGGGTAGAAATTACGAGGACCAGAGGAATTTTGAAGAGGGCGGGTACAGGAGGAGCCGATTCGAACCGACAGAGCAGGAAGGGATGAGCGATACCAGATTCATGGAGAATGGAAGGTATTTTCATGACATTAACTCGAGGAATGATGAAGAAAATGGATCGTACGGAAGTAAGAAGAAGTATCCAAAGTACGAGTTCGATTCAATGGAGGAGTATGAGAGGAGTGAGGGATTGCTTCCTTGA

Coding sequence (CDS)

ATGGCAGCAGCTTCAGCTTCCGCTACTTTCAAGTTCAACCATCTCTCCTTCTCCTTCTTCTTCTTCTTCCTTCTCCTTATCTCCTCTGTTCAAATTGAAGCTAGAGTCAACAAATTCTTCAGTAAATTCATTCATACAGATCACGAGGTTGTTCCCAACACACTTTCCCCGGCGCCCCTCTCTGTTCCGCCTGAGACTTCTCCATCTCTTGCACCGACACCGGCTCCTGCGCCATTTTTCGACGAATCCCAGAATGCTTACGGTCTATACGGCAGTGATCCCGATGCCGATGAAAACACTCGGACGATTACCGACGTGGAAGAGGAGATTCTCGGAGGAGAAGGCGATCAGGACGAGGGGAATGACAAATCTGGGTTTCCGATGAACAATTTTGTTGAAACGAGAAATGAGGAGGAGCAGTACCAGAACAAGAACTATGAGAACAACAATGGGTTTAGAAATTCCGAGTACGATAACCGCAATGAGTACAGAAATTCGGAGTACGAGAACAATAACAATGAGGGTAGAAATTACGAGGACCAGAGGAATTTTGAAGAGGGCGGGTACAGGAGGAGCCGATTCGAACCGACAGAGCAGGAAGGGATGAGCGATACCAGATTCATGGAGAATGGAAGGTATTTTCATGACATTAACTCGAGGAATGATGAAGAAAATGGATCGTACGGAAGTAAGAAGAAGTATCCAAAGTACGAGTTCGATTCAATGGAGGAGTATGAGAGGAGTGAGGGATTGCTTCCTTGA

Protein sequence

MAAASASATFKFNHLSFSFFFFFLLLISSVQIEARVNKFFSKFIHTDHEVVPNTLSPAPLSVPPETSPSLAPTPAPAPFFDESQNAYGLYGSDPDADENTRTITDVEEEILGGEGDQDEGNDKSGFPMNNFVETRNEEEQYQNKNYENNNGFRNSEYDNRNEYRNSEYENNNNEGRNYEDQRNFEEGGYRRSRFEPTEQEGMSDTRFMENGRYFHDINSRNDEENGSYGSKKKYPKYEFDSMEEYERSEGLLP*

Homology

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BLAST of CsaV3_7G003100 vs. NCBI nr
Match: XP_011659700.1 (protein E6 [Cucumis sativus] >KGN43470.1 hypothetical protein Csa_020541 [Cucumis sativus])

HSP 1 Score: 484.2 bits (1245), Expect = 7.0e-133
Identity = 253/253 (100.00%), Postives = 253/253 (100.00%), Query Frame = 0


Query: 1   MAAASASATFKFNHLSFSFFFFFLLLISSVQIEARVNKFFSKFIHTDHEVVPNTLSPAPL 60
           MAAASASATFKFNHLSFSFFFFFLLLISSVQIEARVNKFFSKFIHTDHEVVPNTLSPAPL
Sbjct: 1   MAAASASATFKFNHLSFSFFFFFLLLISSVQIEARVNKFFSKFIHTDHEVVPNTLSPAPL 60

Query: 61  SVPPETSPSLAPTPAPAPFFDESQNAYGLYGSDPDADENTRTITDVEEEILGGEGDQDEG 120
           SVPPETSPSLAPTPAPAPFFDESQNAYGLYGSDPDADENTRTITDVEEEILGGEGDQDEG
Sbjct: 61  SVPPETSPSLAPTPAPAPFFDESQNAYGLYGSDPDADENTRTITDVEEEILGGEGDQDEG 120

Query: 121 NDKSGFPMNNFVETRNEEEQYQNKNYENNNGFRNSEYDNRNEYRNSEYENNNNEGRNYED 180
           NDKSGFPMNNFVETRNEEEQYQNKNYENNNGFRNSEYDNRNEYRNSEYENNNNEGRNYED
Sbjct: 121 NDKSGFPMNNFVETRNEEEQYQNKNYENNNGFRNSEYDNRNEYRNSEYENNNNEGRNYED 180

Query: 181 QRNFEEGGYRRSRFEPTEQEGMSDTRFMENGRYFHDINSRNDEENGSYGSKKKYPKYEFD 240
           QRNFEEGGYRRSRFEPTEQEGMSDTRFMENGRYFHDINSRNDEENGSYGSKKKYPKYEFD
Sbjct: 181 QRNFEEGGYRRSRFEPTEQEGMSDTRFMENGRYFHDINSRNDEENGSYGSKKKYPKYEFD 240

Query: 241 SMEEYERSEGLLP 254
           SMEEYERSEGLLP
Sbjct: 241 SMEEYERSEGLLP 253

[Close]

BLAST of CsaV3_7G003100 vs. NCBI nr
Match: XP_008455495.1 (PREDICTED: protein E6-like [Cucumis melo] >TYK21625.1 protein E6-like [Cucumis melo var. makuwa])

HSP 1 Score: 426.4 bits (1095), Expect = 1.7e-115
Identity = 228/254 (89.76%), Postives = 237/254 (93.31%), Query Frame = 0


Query: 1   MAAASASATFKFNHLSFSFFFFFLLLISSVQIEARVNKFFSKFIHTDH-EVVPNTLSPAP 60
           MAAASAS TF FNHLS    FFFLLL+SSVQ EARVNKFFSKFIHTDH EVVPNTLSPAP
Sbjct: 1   MAAASASTTFNFNHLS----FFFLLLLSSVQTEARVNKFFSKFIHTDHEEVVPNTLSPAP 60

Query: 61  LSVPPETSPSLAPTPAPAPFFDESQNAYGLYGSDPDADENTRTITDVEEEILGGEGDQDE 120
           LSVPPETSPSLAPTPAPAPFFDESQNAYGLYGSDPD DEN RTITDVEEEILGGEGDQDE
Sbjct: 61  LSVPPETSPSLAPTPAPAPFFDESQNAYGLYGSDPDTDENPRTITDVEEEILGGEGDQDE 120

Query: 121 GNDKSGFPMNNFVETRNEEEQYQNKNYENNNGFRNSEYDNRNEYRNSEYENNNNEGRNYE 180
            N KS FPMNNFV+TR++EEQYQNKNYE NNGFRNSEY+N NEYRNSEYENNNNEGRNY+
Sbjct: 121 TNRKSEFPMNNFVQTRDDEEQYQNKNYEYNNGFRNSEYENHNEYRNSEYENNNNEGRNYQ 180

Query: 181 DQRNFEEGGYRRSRFEPTEQEGMSDTRFMENGRYFHDINSRNDEENGSYGSKKKYPKYEF 240
            Q NFE+GGYRRSRFEPTEQ+GMSDTRFMENGRYFHDINS+NDEENGSYGSKKKYPKYEF
Sbjct: 181 YQSNFEDGGYRRSRFEPTEQQGMSDTRFMENGRYFHDINSKNDEENGSYGSKKKYPKYEF 240

Query: 241 DSMEEYERSEGLLP 254
           DSMEEYERSEGLLP
Sbjct: 241 DSMEEYERSEGLLP 250

[Close]

BLAST of CsaV3_7G003100 vs. NCBI nr
Match: KAA0059120.1 (protein E6-like [Cucumis melo var. makuwa])

HSP 1 Score: 423.3 bits (1087), Expect = 1.5e-114
Identity = 227/254 (89.37%), Postives = 236/254 (92.91%), Query Frame = 0


Query: 1   MAAASASATFKFNHLSFSFFFFFLLLISSVQIEARVNKFFSKFIHTDH-EVVPNTLSPAP 60
           MAAASAS TF FNHLS    FFFLLL+SSVQ EARVNKFFSKFIHTDH EVV NTLSPAP
Sbjct: 1   MAAASASTTFNFNHLS----FFFLLLLSSVQTEARVNKFFSKFIHTDHEEVVSNTLSPAP 60

Query: 61  LSVPPETSPSLAPTPAPAPFFDESQNAYGLYGSDPDADENTRTITDVEEEILGGEGDQDE 120
           LSVPPETSPSLAPTPAPAPFFDESQNAYGLYGSDPD DEN RTITDVEEEILGGEGDQDE
Sbjct: 61  LSVPPETSPSLAPTPAPAPFFDESQNAYGLYGSDPDTDENPRTITDVEEEILGGEGDQDE 120

Query: 121 GNDKSGFPMNNFVETRNEEEQYQNKNYENNNGFRNSEYDNRNEYRNSEYENNNNEGRNYE 180
            N KS FPMNNFV+TR++EEQYQNKNYE NNGFRNSEY+N NEYRNSEYENNNNEGRNY+
Sbjct: 121 TNRKSEFPMNNFVQTRDDEEQYQNKNYEYNNGFRNSEYENHNEYRNSEYENNNNEGRNYQ 180

Query: 181 DQRNFEEGGYRRSRFEPTEQEGMSDTRFMENGRYFHDINSRNDEENGSYGSKKKYPKYEF 240
            Q NFE+GGYRRSRFEPTEQ+GMSDTRFMENGRYFHDINS+NDEENGSYGSKKKYPKYEF
Sbjct: 181 YQSNFEDGGYRRSRFEPTEQQGMSDTRFMENGRYFHDINSKNDEENGSYGSKKKYPKYEF 240

Query: 241 DSMEEYERSEGLLP 254
           DSMEEYERSEGLLP
Sbjct: 241 DSMEEYERSEGLLP 250

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BLAST of CsaV3_7G003100 vs. NCBI nr
Match: XP_038886989.1 (protein E6-like [Benincasa hispida])

HSP 1 Score: 330.5 bits (846), Expect = 1.3e-86
Identity = 188/253 (74.31%), Postives = 206/253 (81.42%), Query Frame = 0


Query: 4   ASASATFKFNHLSFSFFFFFLLLISSVQIEARVNKFFSKFIHTDHEVVPNTLSPAPLSVP 63
           A+AS TF       SFFFFF+LL+SSVQIEARVNKFFSKFI+TD EVVP  L PAP+S P
Sbjct: 2   AAASTTFNL----LSFFFFFILLLSSVQIEARVNKFFSKFINTDREVVPTKLPPAPVSAP 61

Query: 64  PETSPSLAPTPAPAPFFDESQNAYGLYGSDPDADENTRTITDVEEEILGGEG-DQDEGND 123
           PE SPSLAPTPAPAPFFDESQNAYGLYG D DADENTRTITDVEEEIL G+G D+DE N 
Sbjct: 62  PEISPSLAPTPAPAPFFDESQNAYGLYGRDADADENTRTITDVEEEILAGDGEDEDEDNH 121

Query: 124 KSGFPMNNFVETRNEEEQYQNKNYENNNGFRNSEYDNRNEYRNSEYEN--NNNEGRNYED 183
           K+ +PM N     ++   Y N NYENNNGFRNSEY+N NEYRNSEYE+   NN  RNY+ 
Sbjct: 122 KAAYPMTN-----SQTGNYGNNNYENNNGFRNSEYENHNEYRNSEYESAFENNNARNYQY 181

Query: 184 QRNFEEGGYRRSRFEPTEQEGMSDTRFMENGRYFHDINSRNDEENGSYGSKKKYPKYEFD 243
           Q NFE+ GYRR R EPT Q+GMSDTRFMENGRYFHDINS+N EENGSYG+  KYPKYEFD
Sbjct: 182 QSNFEDDGYRRRRHEPTRQQGMSDTRFMENGRYFHDINSKNGEENGSYGN-NKYPKYEFD 241

Query: 244 SMEEYERSEGLLP 254
           SMEEYERSEGLLP
Sbjct: 242 SMEEYERSEGLLP 244

[Close]

BLAST of CsaV3_7G003100 vs. NCBI nr
Match: XP_022969172.1 (probable ATP-dependent RNA helicase ddx42 isoform X2 [Cucurbita maxima])

HSP 1 Score: 270.0 bits (689), Expect = 2.1e-68
Identity = 177/287 (61.67%), Postives = 199/287 (69.34%), Query Frame = 0


Query: 3   AASASATFKFNHLSFSFFFFFLLLISSVQIEARVNKFFSKFIHTDHEVV-PNTLSPAPLS 62
           A +AS TFK  HL F F     LL+SSVQIEARVNKFFSKFIH D +VV P   SPAP+S
Sbjct: 2   AMAASITFK--HLPFIF-----LLLSSVQIEARVNKFFSKFIHADRDVVLPVAFSPAPVS 61

Query: 63  VPPETSPSLAPTPAPAPFFDESQNAYGLYGSDPDADENTRTITDVEEEILGGEGDQDEGN 122
           VPPE SPSLAPTPAPAPFFDESQNAYGLYGSD D  E++RTITDVEEEIL  +G +D+  
Sbjct: 62  VPPEISPSLAPTPAPAPFFDESQNAYGLYGSDADDSESSRTITDVEEEILAEDG-EDKKT 121

Query: 123 DKSGFPMN----NF-----VETRNE------------EEQYQNKNYENNNGFRNSEYDNR 182
            KSG+  N    NF      E+RN+               ++N  YENNN  RNSEY+N 
Sbjct: 122 HKSGYQTNLHTDNFESPKRYESRNDGNSGYRNSEYESNNDHRNSEYENNNEHRNSEYENN 181

Query: 183 NEYRNSEYENNNNE--------------GRNYEDQRNFEEGGYRRSRFEPTEQEGMSDTR 242
           NEYRNSEYENNNNE               RNY+ Q N E  GYR+ R+EPTEQ+GMSDTR
Sbjct: 182 NEYRNSEYENNNNEYRNTEYKSDFENSGVRNYQYQSNVEGDGYRKRRYEPTEQQGMSDTR 241

Query: 243 FMENGRYFHDINSRNDEENGSYGSKKKYPKYEFDSMEEYERSEGLLP 254
           FMENGRY+H+INS   EEN SYGS KKYP  EFDSMEEYE+SEG LP
Sbjct: 242 FMENGRYYHEINSGIGEENKSYGS-KKYPN-EFDSMEEYEKSEGFLP 278

[Close]

BLAST of CsaV3_7G003100 vs. ExPASy Swiss-Prot
Match: Q01197 (Protein E6 OS=Gossypium hirsutum OX=3635 GN=E6 PE=2 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.7e-04
Identity = 66/250 (26.40%), Postives = 109/250 (43.60%), Query Frame = 0


Query: 17  FSFFFFFLLLISSVQIEARVNKFFSKFIH--------TDHEVVPNTLSPAPLSVPPETSP 76
           FS    FL  + S+QI AR  ++FSKF          T  E    T  P     P E  P
Sbjct: 8   FSMSILFLFALFSMQIHAR--EYFSKFPRVNINEKETTTREQKHETFVPQTTQKPEEQEP 67

Query: 77  SLAPTPAPAPFFDESQNAYGLYGSDPDADENTRTITDV-EEEILGGEGDQDEGNDKSGFP 136
              P         E+QN YGLYG +  +   + T  +  E  +       DE       P
Sbjct: 68  RFIP---------ETQNGYGLYGHESGSSRPSFTTKETYEPYVTPVRFHPDE-------P 127

Query: 137 MNNFVETRNEEEQYQNKNYENNNGFRNSEYDNRNE--YRNSEYENNNNEGRNYEDQRNFE 196
            N+  E+ N ++ Y    Y N N + +++  N  E  +    +    N+  NY +  N  
Sbjct: 128 YNSIPESSNNKDTY----YYNKNAYESTKQQNLGEAIFTEKGWSTKENQNNNYYNGNN-- 187

Query: 197 EGGYRRSRFEPTEQEGMSDTRFMENGRYFHDINSRND------EENGSYGSKKKYPKYEF 250
             GY        E++GMSDTR++ENG+Y++D+ S N+      + +    S+ ++ +  +
Sbjct: 188 --GYNNG-----EKQGMSDTRYLENGKYYYDVKSENNYYPNRFDNSRGVASRNEFNENRY 226

[Close]

BLAST of CsaV3_7G003100 vs. ExPASy TrEMBL
Match: A0A0A0K1D4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G038700 PE=4 SV=1)

HSP 1 Score: 484.2 bits (1245), Expect = 3.4e-133
Identity = 253/253 (100.00%), Postives = 253/253 (100.00%), Query Frame = 0


Query: 1   MAAASASATFKFNHLSFSFFFFFLLLISSVQIEARVNKFFSKFIHTDHEVVPNTLSPAPL 60
           MAAASASATFKFNHLSFSFFFFFLLLISSVQIEARVNKFFSKFIHTDHEVVPNTLSPAPL
Sbjct: 1   MAAASASATFKFNHLSFSFFFFFLLLISSVQIEARVNKFFSKFIHTDHEVVPNTLSPAPL 60

Query: 61  SVPPETSPSLAPTPAPAPFFDESQNAYGLYGSDPDADENTRTITDVEEEILGGEGDQDEG 120
           SVPPETSPSLAPTPAPAPFFDESQNAYGLYGSDPDADENTRTITDVEEEILGGEGDQDEG
Sbjct: 61  SVPPETSPSLAPTPAPAPFFDESQNAYGLYGSDPDADENTRTITDVEEEILGGEGDQDEG 120

Query: 121 NDKSGFPMNNFVETRNEEEQYQNKNYENNNGFRNSEYDNRNEYRNSEYENNNNEGRNYED 180
           NDKSGFPMNNFVETRNEEEQYQNKNYENNNGFRNSEYDNRNEYRNSEYENNNNEGRNYED
Sbjct: 121 NDKSGFPMNNFVETRNEEEQYQNKNYENNNGFRNSEYDNRNEYRNSEYENNNNEGRNYED 180

Query: 181 QRNFEEGGYRRSRFEPTEQEGMSDTRFMENGRYFHDINSRNDEENGSYGSKKKYPKYEFD 240
           QRNFEEGGYRRSRFEPTEQEGMSDTRFMENGRYFHDINSRNDEENGSYGSKKKYPKYEFD
Sbjct: 181 QRNFEEGGYRRSRFEPTEQEGMSDTRFMENGRYFHDINSRNDEENGSYGSKKKYPKYEFD 240

Query: 241 SMEEYERSEGLLP 254
           SMEEYERSEGLLP
Sbjct: 241 SMEEYERSEGLLP 253

[Close]

BLAST of CsaV3_7G003100 vs. ExPASy TrEMBL
Match: A0A5D3DDN1 (Protein E6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold150G00230 PE=4 SV=1)

HSP 1 Score: 426.4 bits (1095), Expect = 8.4e-116
Identity = 228/254 (89.76%), Postives = 237/254 (93.31%), Query Frame = 0


Query: 1   MAAASASATFKFNHLSFSFFFFFLLLISSVQIEARVNKFFSKFIHTDH-EVVPNTLSPAP 60
           MAAASAS TF FNHLS    FFFLLL+SSVQ EARVNKFFSKFIHTDH EVVPNTLSPAP
Sbjct: 1   MAAASASTTFNFNHLS----FFFLLLLSSVQTEARVNKFFSKFIHTDHEEVVPNTLSPAP 60

Query: 61  LSVPPETSPSLAPTPAPAPFFDESQNAYGLYGSDPDADENTRTITDVEEEILGGEGDQDE 120
           LSVPPETSPSLAPTPAPAPFFDESQNAYGLYGSDPD DEN RTITDVEEEILGGEGDQDE
Sbjct: 61  LSVPPETSPSLAPTPAPAPFFDESQNAYGLYGSDPDTDENPRTITDVEEEILGGEGDQDE 120

Query: 121 GNDKSGFPMNNFVETRNEEEQYQNKNYENNNGFRNSEYDNRNEYRNSEYENNNNEGRNYE 180
            N KS FPMNNFV+TR++EEQYQNKNYE NNGFRNSEY+N NEYRNSEYENNNNEGRNY+
Sbjct: 121 TNRKSEFPMNNFVQTRDDEEQYQNKNYEYNNGFRNSEYENHNEYRNSEYENNNNEGRNYQ 180

Query: 181 DQRNFEEGGYRRSRFEPTEQEGMSDTRFMENGRYFHDINSRNDEENGSYGSKKKYPKYEF 240
            Q NFE+GGYRRSRFEPTEQ+GMSDTRFMENGRYFHDINS+NDEENGSYGSKKKYPKYEF
Sbjct: 181 YQSNFEDGGYRRSRFEPTEQQGMSDTRFMENGRYFHDINSKNDEENGSYGSKKKYPKYEF 240

Query: 241 DSMEEYERSEGLLP 254
           DSMEEYERSEGLLP
Sbjct: 241 DSMEEYERSEGLLP 250

[Close]

BLAST of CsaV3_7G003100 vs. ExPASy TrEMBL
Match: A0A1S3C0L5 (protein E6-like OS=Cucumis melo OX=3656 GN=LOC103495646 PE=4 SV=1)

HSP 1 Score: 426.4 bits (1095), Expect = 8.4e-116
Identity = 228/254 (89.76%), Postives = 237/254 (93.31%), Query Frame = 0


Query: 1   MAAASASATFKFNHLSFSFFFFFLLLISSVQIEARVNKFFSKFIHTDH-EVVPNTLSPAP 60
           MAAASAS TF FNHLS    FFFLLL+SSVQ EARVNKFFSKFIHTDH EVVPNTLSPAP
Sbjct: 1   MAAASASTTFNFNHLS----FFFLLLLSSVQTEARVNKFFSKFIHTDHEEVVPNTLSPAP 60

Query: 61  LSVPPETSPSLAPTPAPAPFFDESQNAYGLYGSDPDADENTRTITDVEEEILGGEGDQDE 120
           LSVPPETSPSLAPTPAPAPFFDESQNAYGLYGSDPD DEN RTITDVEEEILGGEGDQDE
Sbjct: 61  LSVPPETSPSLAPTPAPAPFFDESQNAYGLYGSDPDTDENPRTITDVEEEILGGEGDQDE 120

Query: 121 GNDKSGFPMNNFVETRNEEEQYQNKNYENNNGFRNSEYDNRNEYRNSEYENNNNEGRNYE 180
            N KS FPMNNFV+TR++EEQYQNKNYE NNGFRNSEY+N NEYRNSEYENNNNEGRNY+
Sbjct: 121 TNRKSEFPMNNFVQTRDDEEQYQNKNYEYNNGFRNSEYENHNEYRNSEYENNNNEGRNYQ 180

Query: 181 DQRNFEEGGYRRSRFEPTEQEGMSDTRFMENGRYFHDINSRNDEENGSYGSKKKYPKYEF 240
            Q NFE+GGYRRSRFEPTEQ+GMSDTRFMENGRYFHDINS+NDEENGSYGSKKKYPKYEF
Sbjct: 181 YQSNFEDGGYRRSRFEPTEQQGMSDTRFMENGRYFHDINSKNDEENGSYGSKKKYPKYEF 240

Query: 241 DSMEEYERSEGLLP 254
           DSMEEYERSEGLLP
Sbjct: 241 DSMEEYERSEGLLP 250

[Close]

BLAST of CsaV3_7G003100 vs. ExPASy TrEMBL
Match: A0A5A7UVJ1 (Protein E6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G00270 PE=4 SV=1)

HSP 1 Score: 423.3 bits (1087), Expect = 7.1e-115
Identity = 227/254 (89.37%), Postives = 236/254 (92.91%), Query Frame = 0


Query: 1   MAAASASATFKFNHLSFSFFFFFLLLISSVQIEARVNKFFSKFIHTDH-EVVPNTLSPAP 60
           MAAASAS TF FNHLS    FFFLLL+SSVQ EARVNKFFSKFIHTDH EVV NTLSPAP
Sbjct: 1   MAAASASTTFNFNHLS----FFFLLLLSSVQTEARVNKFFSKFIHTDHEEVVSNTLSPAP 60

Query: 61  LSVPPETSPSLAPTPAPAPFFDESQNAYGLYGSDPDADENTRTITDVEEEILGGEGDQDE 120
           LSVPPETSPSLAPTPAPAPFFDESQNAYGLYGSDPD DEN RTITDVEEEILGGEGDQDE
Sbjct: 61  LSVPPETSPSLAPTPAPAPFFDESQNAYGLYGSDPDTDENPRTITDVEEEILGGEGDQDE 120

Query: 121 GNDKSGFPMNNFVETRNEEEQYQNKNYENNNGFRNSEYDNRNEYRNSEYENNNNEGRNYE 180
            N KS FPMNNFV+TR++EEQYQNKNYE NNGFRNSEY+N NEYRNSEYENNNNEGRNY+
Sbjct: 121 TNRKSEFPMNNFVQTRDDEEQYQNKNYEYNNGFRNSEYENHNEYRNSEYENNNNEGRNYQ 180

Query: 181 DQRNFEEGGYRRSRFEPTEQEGMSDTRFMENGRYFHDINSRNDEENGSYGSKKKYPKYEF 240
            Q NFE+GGYRRSRFEPTEQ+GMSDTRFMENGRYFHDINS+NDEENGSYGSKKKYPKYEF
Sbjct: 181 YQSNFEDGGYRRSRFEPTEQQGMSDTRFMENGRYFHDINSKNDEENGSYGSKKKYPKYEF 240

Query: 241 DSMEEYERSEGLLP 254
           DSMEEYERSEGLLP
Sbjct: 241 DSMEEYERSEGLLP 250

[Close]

BLAST of CsaV3_7G003100 vs. ExPASy TrEMBL
Match: A0A6J1HVL6 (probable ATP-dependent RNA helicase ddx42 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111468248 PE=4 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 1.0e-68
Identity = 177/287 (61.67%), Postives = 199/287 (69.34%), Query Frame = 0


Query: 3   AASASATFKFNHLSFSFFFFFLLLISSVQIEARVNKFFSKFIHTDHEVV-PNTLSPAPLS 62
           A +AS TFK  HL F F     LL+SSVQIEARVNKFFSKFIH D +VV P   SPAP+S
Sbjct: 2   AMAASITFK--HLPFIF-----LLLSSVQIEARVNKFFSKFIHADRDVVLPVAFSPAPVS 61

Query: 63  VPPETSPSLAPTPAPAPFFDESQNAYGLYGSDPDADENTRTITDVEEEILGGEGDQDEGN 122
           VPPE SPSLAPTPAPAPFFDESQNAYGLYGSD D  E++RTITDVEEEIL  +G +D+  
Sbjct: 62  VPPEISPSLAPTPAPAPFFDESQNAYGLYGSDADDSESSRTITDVEEEILAEDG-EDKKT 121

Query: 123 DKSGFPMN----NF-----VETRNE------------EEQYQNKNYENNNGFRNSEYDNR 182
            KSG+  N    NF      E+RN+               ++N  YENNN  RNSEY+N 
Sbjct: 122 HKSGYQTNLHTDNFESPKRYESRNDGNSGYRNSEYESNNDHRNSEYENNNEHRNSEYENN 181

Query: 183 NEYRNSEYENNNNE--------------GRNYEDQRNFEEGGYRRSRFEPTEQEGMSDTR 242
           NEYRNSEYENNNNE               RNY+ Q N E  GYR+ R+EPTEQ+GMSDTR
Sbjct: 182 NEYRNSEYENNNNEYRNTEYKSDFENSGVRNYQYQSNVEGDGYRKRRYEPTEQQGMSDTR 241

Query: 243 FMENGRYFHDINSRNDEENGSYGSKKKYPKYEFDSMEEYERSEGLLP 254
           FMENGRY+H+INS   EEN SYGS KKYP  EFDSMEEYE+SEG LP
Sbjct: 242 FMENGRYYHEINSGIGEENKSYGS-KKYPN-EFDSMEEYEKSEGFLP 278

[Close]

BLAST of CsaV3_7G003100 vs. TAIR 10
Match: AT2G33850.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G28400.1); Has 3053 Blast hits to 2119 proteins in 133 species: Archae - 6; Bacteria - 52; Metazoa - 135; Fungi - 96; Plants - 73; Viruses - 2; Other Eukaryotes - 2689 (source: NCBI BLink). )

HSP 1 Score: 52.4 bits (124), Expect = 6.3e-07
Identity = 81/272 (29.78%), Postives = 117/272 (43.01%), Query Frame = 0


Query: 12  FNHLSFSFFFFFLLLISSVQIEARVNKFFSKFIHTD-HEVVPNTLSPAPLSVPPETSPSL 71
           F+  S  FFF   L++ S QI AR +  F KF   D  E  PN L      VP ET+   
Sbjct: 3   FSTSSCLFFFLLTLVLFSTQISARNSYSFGKFQREDPKEQNPNNL------VPIETNEKK 62

Query: 72  APTPAPAPFFDESQNAYGLYGSDPDADENTRTITDVEEEILGGEGDQDEGNDKSGFPMNN 131
            P      F  +S+N YGLYG +          TD   E L     +D  N    F   +
Sbjct: 63  EPDDQNPAFIPQSENGYGLYGHE---------TTDNNNEELNNNKYEDNVNYDDSFSTPS 122

Query: 132 FVETRNEEEQYQN---------KNYENNNGFRNSEYDNRNEYRNSEYENNNNE---GRNY 191
             ET   +E Y+N         + Y+NN     S Y+N N Y   + +N+ N+   G + 
Sbjct: 123 LSETAQTQESYKNYKESYPKTTEIYDNNKD--TSYYENSNAYGTDKRDNDINDPYKGYSN 182

Query: 192 EDQRNFEEG---GYRRSRFEP--------TEQEGMSDTRFMENGRYFHDINSRNDEENG- 247
           +D   +E     G  +   EP         E++GMSDTR+M NG+Y++D++  +D  +G 
Sbjct: 183 KDTSYYENPNTYGTEKREKEPAYRGYNNNVERQGMSDTRYMANGKYYYDLD--DDRNHGR 242

[Close]

BLAST of CsaV3_7G003100 vs. TAIR 10
Match: AT1G28400.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33850.1); Has 45374 Blast hits to 18870 proteins in 668 species: Archae - 72; Bacteria - 1460; Metazoa - 1191; Fungi - 1038; Plants - 174; Viruses - 64; Other Eukaryotes - 41375 (source: NCBI BLink). )

HSP 1 Score: 46.2 bits (108), Expect = 4.5e-05
Identity = 78/268 (29.10%), Postives = 111/268 (41.42%), Query Frame = 0


Query: 20  FFFFLLLISSVQIEARVNKFFSKFIHTDHEVVPNTLSPAPLSVPPETSP-----SLAPTP 79
           FFF  L++ S QI AR + FF KF H +     N  S  PL    +T+      +     
Sbjct: 11  FFFTTLVLLSTQIHARDSYFFGKF-HRESPKDQNPNSFIPLETSEKTTVEESVLNKKEQE 70

Query: 80  APAPFFDESQNAYGLYGSDPDADENTRTITDVEEEILGGEGDQDEGNDKSGFPMNNFVET 139
               F  ES N YGLYG +   + N     D +EE      + ++ N K+ F   +  ET
Sbjct: 71  QDPTFVPESGNGYGLYGHETTYNNN----NDNKEEFNNNNKNDEKVNSKT-FSTPSLSET 130

Query: 140 ----RNEEEQYQNK--NYENNNGFRNSEYDNRN---------EYRNSEYE---------- 199
                N EE Y  K  NY    G+ N E++N N         E+ N++Y+          
Sbjct: 131 EESFNNYEENYPKKTENY-GTKGYNNEEFNNNNNKYDANFKEEFNNNKYDENYAKEEFNN 190

Query: 200 NNNNEGRNYEDQRNFEEGGYRRSRFE--------------------------PTEQEGMS 232
           NNNN   NY+   N +E  +  +  +                            E++GMS
Sbjct: 191 NNNNNNYNYKYDENVKEESFPENNEDNKKNVYNSNAYGTELERETPYKGYSHNLERQGMS 250

[Close]

BLAST of CsaV3_7G003100 vs. TAIR 10
Match: AT1G03820.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 1345 Blast hits to 1122 proteins in 102 species: Archae - 2; Bacteria - 28; Metazoa - 28; Fungi - 30; Plants - 109; Viruses - 0; Other Eukaryotes - 1148 (source: NCBI BLink). )

HSP 1 Score: 45.1 bits (105), Expect = 1.0e-04
Identity = 73/243 (30.04%), Postives = 103/243 (42.39%), Query Frame = 0


Query: 17  FSFFFFFLLLISSVQIEARVNK-FFSKFIHTDHEVVPNTLSPAPLSVPPETSPSLAPTPA 76
           F F   F  ++ +V  EAR  K FFSKF H D               P     +L+P PA
Sbjct: 10  FCFIAVFCFIVHNV--EAREGKLFFSKFTHIDR--------------PNNKDVALSPAPA 69

Query: 77  PAPFFDESQNAYGLYGSD----PDADE---NTRTITDVEEEILGGEGDQDEGNDKSGFPM 136
           P       +   G +G      P   E   ++ T TD E E L    D+++         
Sbjct: 70  PGLAQANGRLGNGSFGPGSGMIPQTKESWPSSSTTTDEEFEKLMATFDEEKN-------- 129

Query: 137 NNFVETRNEEEQYQNKNYENNNGFRNSEYDNRNEYRNSEYENNNNEGRNYEDQRNFEEGG 196
               E   EEE+             + + ++ NE ++    NNNN G  Y    N+ + G
Sbjct: 130 TKLPEAFEEEEE-------------SEDSEDLNEPKDKYNNNNNNNGYTY-TTNNYNDNG 189

Query: 197 YRRSRFEPTEQEGMSDTRFMENGRYFHDINSRNDEENGSYG---SKKKYPKYEFDSMEEY 249
             R      E++GMSDTR MENG+YF+D   RN E   S G   ++      EF++MEEY
Sbjct: 190 --RGYGNEEEKQGMSDTRVMENGKYFYDTRGRNSENTPSRGYENARGNDHTNEFETMEEY 212

The following BLAST results are available for this feature:

BLAST of CsaV3_7G003100 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011659700.1	7.0e-133	100.00	protein E6 [Cucumis sativus] >KGN43470.1 hypothetical protein Csa_020541 [Cucumi...	[more]
XP_008455495.1	1.7e-115	89.76	PREDICTED: protein E6-like [Cucumis melo] >TYK21625.1 protein E6-like [Cucumis m...	[more]
KAA0059120.1	1.5e-114	89.37	protein E6-like [Cucumis melo var. makuwa]	[more]
XP_038886989.1	1.3e-86	74.31	protein E6-like [Benincasa hispida]	[more]
XP_022969172.1	2.1e-68	61.67	probable ATP-dependent RNA helicase ddx42 isoform X2 [Cucurbita maxima]	[more]

BLAST of CsaV3_7G003100 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q01197	1.7e-04	26.40	Protein E6 OS=Gossypium hirsutum OX=3635 GN=E6 PE=2 SV=1	[more]

BLAST of CsaV3_7G003100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K1D4	3.4e-133	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G038700 PE=4 SV=1	[more]
A0A5D3DDN1	8.4e-116	89.76	Protein E6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold150G0023...	[more]
A0A1S3C0L5	8.4e-116	89.76	protein E6-like OS=Cucumis melo OX=3656 GN=LOC103495646 PE=4 SV=1	[more]
A0A5A7UVJ1	7.1e-115	89.37	Protein E6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G0027...	[more]
A0A6J1HVL6	1.0e-68	61.67	probable ATP-dependent RNA helicase ddx42 isoform X2 OS=Cucurbita maxima OX=3661...	[more]

BLAST of CsaV3_7G003100 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G33850.1	6.3e-07	29.78	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G28400.1	4.5e-05	29.10	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G03820.1	1.0e-04	30.04	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 129..149
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 164..253
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 164..202
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 209..247
None	No IPR available	PANTHER	PTHR35274:SF5	BNAC05G02100D PROTEIN	coord: 18..248
IPR040290	Protein E6-like	PANTHER	PTHR35274	E6-LIKE PROTEIN	coord: 18..248

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G003100.1	CsaV3_7G003100.1	mRNA