CsaV3_7G002680 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G002680
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr7: 2058299 .. 2059734 (-)
RNA-Seq Expression	CsaV3_7G002680
Synteny	CsaV3_7G002680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATTAAGAAGCGGAAGCTTGTGCGTTACCAAACAACGGCCTTAGAATATGCTCTTAGCTGTTATCAACTTTACCGGGAACTTCATCGGAGCCGGAGCACCAATCACTGCTTCTCAACTCTAACCATTTCAATTCCTTCTCTCTCTATCTTCTTCTTCTTCTTCTTCCTCCTCCTCTTCTTCTTCCTCTTCCCGGTATCTTCTCTCTTTTCTTCTTCATCGGAGCTTCAATTTGACTTCAATTTCTTTGTCTCCTTACCCACTTCCCTCGTCTTCTGCACCTCTGATTCGCCTGCTCCAATTCCGAACCCGGACTTGTATTTGACGGCTGTGATTGATTTCTAGCGGAATTCTGTGCTTCCACCTCAAATTACTACACCTTTGTGATTTTCTAGGGCTTCAAACTCCAAGCCTTTGGCACTGAACCGGAGGTAGAGCTTTTTTCCCTTTCTCATGTCTAACTCAATATTATTGTTGTAAATTTTTTTTTTGGGGGGAGGGAGATAACAGATAAGTATGTGGATATTTTTCTCTTGTTTCTGAAATTGAAGGCGGAGTTTTGTGATTTGGATCTTAATTATTTTGATCCGTACTGGAGCCGGAGAATCTAGTTACTCAGCTCAAGCTGAGCCTACTTGGTCCGTATGTTTTGGATGAAATTAGTAGCTAATTCTTTTTCTTCTCTTTATAAGCTTTAGTTGGAGTGAGAGTTTTACTTTGAACACCATTGTTTCTTTGTTCGCCTCGAAGATTTCATCGGATGGTGTGCAAGTGGTGGATTATTGTGCACTGAATTCGATTTCCATGTCTATTCTTTTTTCTATTAAAAAATTTTGGTTATTAATTGAGAATGAAGATTATTTCCATGTATTGAATAATATATATCTTATCCCACTTCCCGAAACTTTTAAATGTTCAATATTTTGATTTTAGTACGGTATATTTTCGAAGTCAATCCTTCTTCTATATTGTAAATTATAGTAGTCTGAATCAACTCTGACACTCTAGTTTCCATTTTTTTTTTTTGGGGAGGGGGGGTTCTTGGGCTAAACTGAAATTTCCACTTTTCATGCGTACAAACACATTTTCATATTAGAAACAGCTTGGGGTTATATAATGCATGAATTTGGGGATGCTGAGTATGCATGAAATCTTCACGTTTTCTTTATGACCATGACTATGAAGTTTGAAGTAAATTGTCTACGCACACAATGACACGATCATTCTCGAATAATATTAATAAATTGTTTGTTTGATATCTGGCCTCTTGAATTTTGATTATATGGAGGTAGTCCAAAATGACTTTTAGCAATTTTCCATTTTGTTGCATTTCTTACCAGGATTCAGTATACAGCTAGACGTGACGTGGGATCCAGTTTCTGTGTCAATCAAATTGTGGAGAATAAGAGTTCTTTAGAGCTCTCTGGTTTATGA

mRNA sequence

ATGGCATTAAGAAGCGGAAGCTTCTGTTATCAACTTTACCGGGAACTTCATCGGAGCCGGAGCACCAATCACTGCTTCTCAACTCTAACCATTTCAATTCCTTCTCTCTCTATCTTCTTCTTCTTCTTCTTCCTCCTCCTCTTCTTCTTCCTCTTCCCGGTATCTTCTCTCTTTTCTTCTTCATCGGAGCTTCAATTTGACTTCAATTTCTTTGTCTCCTTACCCACTTCCCTCGTCTTCTGCACCTCTGATTCGCCTGCTCCAATTCCGAACCCGGACTTGGCTTCAAACTCCAAGCCTTTGGCACTGAACCGGAGGATTCAGTATACAGCTAGACGTGACGTGGGATCCAGTTTCTGTGTCAATCAAATTGTGGAGAATAAGAGTTCTTTAGAGCTCTCTGGTTTATGA

Coding sequence (CDS)

ATGGCATTAAGAAGCGGAAGCTTCTGTTATCAACTTTACCGGGAACTTCATCGGAGCCGGAGCACCAATCACTGCTTCTCAACTCTAACCATTTCAATTCCTTCTCTCTCTATCTTCTTCTTCTTCTTCTTCCTCCTCCTCTTCTTCTTCCTCTTCCCGGTATCTTCTCTCTTTTCTTCTTCATCGGAGCTTCAATTTGACTTCAATTTCTTTGTCTCCTTACCCACTTCCCTCGTCTTCTGCACCTCTGATTCGCCTGCTCCAATTCCGAACCCGGACTTGGCTTCAAACTCCAAGCCTTTGGCACTGAACCGGAGGATTCAGTATACAGCTAGACGTGACGTGGGATCCAGTTTCTGTGTCAATCAAATTGTGGAGAATAAGAGTTCTTTAGAGCTCTCTGGTTTATGA

Protein sequence

MALRSGSFCYQLYRELHRSRSTNHCFSTLTISIPSLSIFFFFFFLLLFFFLFPVSSLFSSSSELQFDFNFFVSLPTSLVFCTSDSPAPIPNPDLASNSKPLALNRRIQYTARRDVGSSFCVNQIVENKSSLELSGL*

Homology

[Close]

BLAST of CsaV3_7G002680 vs. NCBI nr
Match: KGN43428.1 (hypothetical protein Csa_020467 [Cucumis sativus])

HSP 1 Score: 260.0 bits (663), Expect = 1.2e-65
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MALRSGSFCYQLYRELHRSRSTNHCFSTLTISIPSLSIFFFFFFLLLFFFLFPVSSLFSS 60
           MALRSGSFCYQLYRELHRSRSTNHCFSTLTISIPSLSIFFFFFFLLLFFFLFPVSSLFSS
Sbjct: 1   MALRSGSFCYQLYRELHRSRSTNHCFSTLTISIPSLSIFFFFFFLLLFFFLFPVSSLFSS 60

Query: 61  SSELQFDFNFFVSLPTSLVFCTSDSPAPIPNPDLASNSKPLALNRRIQYTARRDVGSSFC 120
           SSELQFDFNFFVSLPTSLVFCTSDSPAPIPNPDLASNSKPLALNRRIQYTARRDVGSSFC
Sbjct: 61  SSELQFDFNFFVSLPTSLVFCTSDSPAPIPNPDLASNSKPLALNRRIQYTARRDVGSSFC 120

Query: 121 VNQIVENKSSLELSGL 137
           VNQIVENKSSLELSGL
Sbjct: 121 VNQIVENKSSLELSGL 136

[Close]

BLAST of CsaV3_7G002680 vs. ExPASy TrEMBL
Match: A0A0A0K1U7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G033360 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 5.6e-66
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MALRSGSFCYQLYRELHRSRSTNHCFSTLTISIPSLSIFFFFFFLLLFFFLFPVSSLFSS 60
           MALRSGSFCYQLYRELHRSRSTNHCFSTLTISIPSLSIFFFFFFLLLFFFLFPVSSLFSS
Sbjct: 1   MALRSGSFCYQLYRELHRSRSTNHCFSTLTISIPSLSIFFFFFFLLLFFFLFPVSSLFSS 60

Query: 61  SSELQFDFNFFVSLPTSLVFCTSDSPAPIPNPDLASNSKPLALNRRIQYTARRDVGSSFC 120
           SSELQFDFNFFVSLPTSLVFCTSDSPAPIPNPDLASNSKPLALNRRIQYTARRDVGSSFC
Sbjct: 61  SSELQFDFNFFVSLPTSLVFCTSDSPAPIPNPDLASNSKPLALNRRIQYTARRDVGSSFC 120

Query: 121 VNQIVENKSSLELSGL 137
           VNQIVENKSSLELSGL
Sbjct: 121 VNQIVENKSSLELSGL 136

The following BLAST results are available for this feature:

BLAST of CsaV3_7G002680 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN43428.1	1.2e-65	100.00	hypothetical protein Csa_020467 [Cucumis sativus]	[more]

BLAST of CsaV3_7G002680 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G002680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K1U7	5.6e-66	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G033360 PE=4 SV=1	[more]

BLAST of CsaV3_7G002680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G002680.1	CsaV3_7G002680.1	mRNA