CsaV3_7G010220 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G010220
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	transcription termination factor MTEF1, chloroplastic
Location	chr7: 5807578 .. 5808426 (-)
RNA-Seq Expression	CsaV3_7G010220
Synteny	CsaV3_7G010220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGTCGGACCTCCGGTTCTCTCCCACTCATTCCTCGCCCTCTATTCTTTCTCTCACTTCACCACTCCCACTCCGACTACCAGATCTCGCCATCCTCATCTTCATCCTCCATCCATCAACTTCCGCACTTCACATCACCAAAACATCCGTTACCTCAAATCCCTGAACGTCATCGATCCCCAAACCAGGTTTCACTCTCCCGACGCCGTCCACCAAATCCTTACCACCGTCCATTTCCTCAAATCCAAGGGCTTCTCCGACTCCGATTTCCCCAGACTCGCCTTCCTCTGCCCTAACCTCTTCACTTCAAACTTCGATACCACCGACATTGCCCCCGTTTTCCAATTCCTCGCCACTGATATATCCGCTTCCCTTCAAGAATCGCGCGGATTGATCCTCCGATGCCCTAAGATTCTCTTCTCCGACGTCGAATTGTGTCTCAAGCCGACGCACAGGTTTTTGAAGCAGTTAGGGATCGAGAATCTGAAATCGCCGAGTAATTTGAATTCGCATCTTCTGAACACTCGGGTGGAGAAGCTAAGAAGCAAAATCAGATTCTTCCAGGAGATCGGATTCTCGCACGAGGAGGCGTCAAAGGTTTGTGGGAGAATGCCGGCGATGTTCGGGTACAGTGTGAAGGAGAATTTGAAGCCTAAGTACGAGTATTTCGTGAAGGAGATGGAGAGGGATTTGGAGGAATTGAAAGGGTTTCCTCAGTATTTCGGGTTTAGTTTGGAAGGAAGAATTATGCCTAGACATTTGCATTTGAAACAAAGGGGCCTTCATATTCCTCTCAATAGTATGTTGTTGTGGAGTCACAATAGGTTTTACTCTAAATGGAAATGA

mRNA sequence

ATGGCGGTCGGACCTCCGGTTCTCTCCCACTCATTCCTCGCCCTCTATTCTTTCTCTCACTTCACCACTCCCACTCCGACTACCAGATCTCGCCATCCTCATCTTCATCCTCCATCCATCAACTTCCGCACTTCACATCACCAAAACATCCGTTACCTCAAATCCCTGAACGTCATCGATCCCCAAACCAGGTTTCACTCTCCCGACGCCGTCCACCAAATCCTTACCACCGTCCATTTCCTCAAATCCAAGGGCTTCTCCGACTCCGATTTCCCCAGACTCGCCTTCCTCTGCCCTAACCTCTTCACTTCAAACTTCGATACCACCGACATTGCCCCCGTTTTCCAATTCCTCGCCACTGATATATCCGCTTCCCTTCAAGAATCGCGCGGATTGATCCTCCGATGCCCTAAGATTCTCTTCTCCGACGTCGAATTGTGTCTCAAGCCGACGCACAGGTTTTTGAAGCAGTTAGGGATCGAGAATCTGAAATCGCCGAGTAATTTGAATTCGCATCTTCTGAACACTCGGGTGGAGAAGCTAAGAAGCAAAATCAGATTCTTCCAGGAGATCGGATTCTCGCACGAGGAGGCGTCAAAGGTTTGTGGGAGAATGCCGGCGATGTTCGGGTACAGTGTGAAGGAGAATTTGAAGCCTAAGTACGAGTATTTCGTGAAGGAGATGGAGAGGGATTTGGAGGAATTGAAAGGGTTTCCTCAGTATTTCGGGTTTAGTTTGGAAGGAAGAATTATGCCTAGACATTTGCATTTGAAACAAAGGGGCCTTCATATTCCTCTCAATAGTATGTTGTTGTGGAGTCACAATAGGTTTTACTCTAAATGGAAATGA

Coding sequence (CDS)

ATGGCGGTCGGACCTCCGGTTCTCTCCCACTCATTCCTCGCCCTCTATTCTTTCTCTCACTTCACCACTCCCACTCCGACTACCAGATCTCGCCATCCTCATCTTCATCCTCCATCCATCAACTTCCGCACTTCACATCACCAAAACATCCGTTACCTCAAATCCCTGAACGTCATCGATCCCCAAACCAGGTTTCACTCTCCCGACGCCGTCCACCAAATCCTTACCACCGTCCATTTCCTCAAATCCAAGGGCTTCTCCGACTCCGATTTCCCCAGACTCGCCTTCCTCTGCCCTAACCTCTTCACTTCAAACTTCGATACCACCGACATTGCCCCCGTTTTCCAATTCCTCGCCACTGATATATCCGCTTCCCTTCAAGAATCGCGCGGATTGATCCTCCGATGCCCTAAGATTCTCTTCTCCGACGTCGAATTGTGTCTCAAGCCGACGCACAGGTTTTTGAAGCAGTTAGGGATCGAGAATCTGAAATCGCCGAGTAATTTGAATTCGCATCTTCTGAACACTCGGGTGGAGAAGCTAAGAAGCAAAATCAGATTCTTCCAGGAGATCGGATTCTCGCACGAGGAGGCGTCAAAGGTTTGTGGGAGAATGCCGGCGATGTTCGGGTACAGTGTGAAGGAGAATTTGAAGCCTAAGTACGAGTATTTCGTGAAGGAGATGGAGAGGGATTTGGAGGAATTGAAAGGGTTTCCTCAGTATTTCGGGTTTAGTTTGGAAGGAAGAATTATGCCTAGACATTTGCATTTGAAACAAAGGGGCCTTCATATTCCTCTCAATAGTATGTTGTTGTGGAGTCACAATAGGTTTTACTCTAAATGGAAATGA

Protein sequence

MAVGPPVLSHSFLALYSFSHFTTPTPTTRSRHPHLHPPSINFRTSHHQNIRYLKSLNVIDPQTRFHSPDAVHQILTTVHFLKSKGFSDSDFPRLAFLCPNLFTSNFDTTDIAPVFQFLATDISASLQESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVEKLRSKIRFFQEIGFSHEEASKVCGRMPAMFGYSVKENLKPKYEYFVKEMERDLEELKGFPQYFGFSLEGRIMPRHLHLKQRGLHIPLNSMLLWSHNRFYSKWK*

Homology

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BLAST of CsaV3_7G010220 vs. NCBI nr
Match: XP_011658929.1 (transcription termination factor MTEF1, chloroplastic [Cucumis sativus] >KGN43986.1 hypothetical protein Csa_017691 [Cucumis sativus])

HSP 1 Score: 579.7 bits (1493), Expect = 1.4e-161
Identity = 282/282 (100.00%), Postives = 282/282 (100.00%), Query Frame = 0


Query: 1   MAVGPPVLSHSFLALYSFSHFTTPTPTTRSRHPHLHPPSINFRTSHHQNIRYLKSLNVID 60
           MAVGPPVLSHSFLALYSFSHFTTPTPTTRSRHPHLHPPSINFRTSHHQNIRYLKSLNVID
Sbjct: 1   MAVGPPVLSHSFLALYSFSHFTTPTPTTRSRHPHLHPPSINFRTSHHQNIRYLKSLNVID 60

Query: 61  PQTRFHSPDAVHQILTTVHFLKSKGFSDSDFPRLAFLCPNLFTSNFDTTDIAPVFQFLAT 120
           PQTRFHSPDAVHQILTTVHFLKSKGFSDSDFPRLAFLCPNLFTSNFDTTDIAPVFQFLAT
Sbjct: 61  PQTRFHSPDAVHQILTTVHFLKSKGFSDSDFPRLAFLCPNLFTSNFDTTDIAPVFQFLAT 120

Query: 121 DISASLQESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVEK 180
           DISASLQESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVEK
Sbjct: 121 DISASLQESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVEK 180

Query: 181 LRSKIRFFQEIGFSHEEASKVCGRMPAMFGYSVKENLKPKYEYFVKEMERDLEELKGFPQ 240
           LRSKIRFFQEIGFSHEEASKVCGRMPAMFGYSVKENLKPKYEYFVKEMERDLEELKGFPQ
Sbjct: 181 LRSKIRFFQEIGFSHEEASKVCGRMPAMFGYSVKENLKPKYEYFVKEMERDLEELKGFPQ 240

Query: 241 YFGFSLEGRIMPRHLHLKQRGLHIPLNSMLLWSHNRFYSKWK 283
           YFGFSLEGRIMPRHLHLKQRGLHIPLNSMLLWSHNRFYSKWK
Sbjct: 241 YFGFSLEGRIMPRHLHLKQRGLHIPLNSMLLWSHNRFYSKWK 282

[Close]

BLAST of CsaV3_7G010220 vs. NCBI nr
Match: XP_008454873.1 (PREDICTED: transcription termination factor MTEF1, chloroplastic [Cucumis melo] >KAA0031250.1 transcription termination factor MTEF1 [Cucumis melo var. makuwa] >TYK06701.1 transcription termination factor MTEF1 [Cucumis melo var. makuwa])

HSP 1 Score: 537.0 bits (1382), Expect = 1.0e-148
Identity = 261/282 (92.55%), Postives = 269/282 (95.39%), Query Frame = 0


Query: 1   MAVGPPVLSHSFLALYSFSHFTTPTPTTRSRHPHLHPPSINFRTSHHQNIRYLKSLNVID 60
           MAVG PVLSHSF  + SFSHFTTPTPTTRSRHPHLHPPSINFRTSH QN+RYLKSLN+ID
Sbjct: 1   MAVGAPVLSHSFPIVSSFSHFTTPTPTTRSRHPHLHPPSINFRTSHQQNLRYLKSLNIID 60

Query: 61  PQTRFHSPDAVHQILTTVHFLKSKGFSDSDFPRLAFLCPNLFTSNFDTTDIAPVFQFLAT 120
           PQTRF SPDAV QILTTVHFLKSKGFSDSDFPRLAF CPNLFTSNFDTTDIAPVF FLA 
Sbjct: 61  PQTRFRSPDAVDQILTTVHFLKSKGFSDSDFPRLAFFCPNLFTSNFDTTDIAPVFHFLAA 120

Query: 121 DISASLQESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVEK 180
           DISAS+QESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVEK
Sbjct: 121 DISASIQESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVEK 180

Query: 181 LRSKIRFFQEIGFSHEEASKVCGRMPAMFGYSVKENLKPKYEYFVKEMERDLEELKGFPQ 240
           LR+KIRF QEIGFS+EEASKVCGRMPA+FGYSVKENL+PKYEY VK MERDLEELKGFPQ
Sbjct: 181 LRNKIRFLQEIGFSYEEASKVCGRMPAIFGYSVKENLRPKYEYLVKVMERDLEELKGFPQ 240

Query: 241 YFGFSLEGRIMPRHLHLKQRGLHIPLNSMLLWSHNRFYSKWK 283
           YFGFSLEGRIMPRHLHLKQRGLHIPLNSMLLWSHNRFYSKWK
Sbjct: 241 YFGFSLEGRIMPRHLHLKQRGLHIPLNSMLLWSHNRFYSKWK 282

[Close]

BLAST of CsaV3_7G010220 vs. NCBI nr
Match: XP_038887809.1 (transcription termination factor MTEF1, chloroplastic [Benincasa hispida])

HSP 1 Score: 468.8 bits (1205), Expect = 3.4e-128
Identity = 236/282 (83.69%), Postives = 249/282 (88.30%), Query Frame = 0


Query: 1   MAVGPPVLSHSFLALYSFSHFTTPTPTTRSRHPHLHPPSINFRTSHHQNIRYLKSLNVID 60
           MAVG    +  F  + SFSHF   TPTTRSR  HL PP INFRT H QN+RYLKSL++ID
Sbjct: 6   MAVG---AAAPFTTVSSFSHF--KTPTTRSR-LHLPPPFINFRTPHQQNLRYLKSLHIID 65

Query: 61  PQTRFHSPDAVHQILTTVHFLKSKGFSDSDFPRLAFLCPNLFTSNFDTTDIAPVFQFLAT 120
            QTRFHSPDA+ QILTTVHFLKSKGFSDSDFPRLAFLCP LFT NFD TDIAPVF FLA 
Sbjct: 66  SQTRFHSPDAIDQILTTVHFLKSKGFSDSDFPRLAFLCPQLFTPNFDPTDIAPVFHFLAA 125

Query: 121 DISASLQESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVEK 180
           D+SAS+QESRGLILRCP+IL SDVELCLKPTH+FLKQLGIENLKSPSNLNSHLLNTRVEK
Sbjct: 126 DLSASVQESRGLILRCPRILLSDVELCLKPTHKFLKQLGIENLKSPSNLNSHLLNTRVEK 185

Query: 181 LRSKIRFFQEIGFSHEEASKVCGRMPAMFGYSVKENLKPKYEYFVKEMERDLEELKGFPQ 240
           LRSKIRF QEIGFSHEEA+K+CGRMPAMFGYSV+ENLKPKYEY VKEMERDLEELKGFPQ
Sbjct: 186 LRSKIRFMQEIGFSHEEAAKICGRMPAMFGYSVEENLKPKYEYLVKEMERDLEELKGFPQ 245

Query: 241 YFGFSLEGRIMPRHLHLKQRGLHIPLNSMLLWSHNRFYSKWK 283
           YFGFSLE RIMPRHLHLKQR L IPLN MLLWS NRFYSKWK
Sbjct: 246 YFGFSLEARIMPRHLHLKQRNLRIPLNRMLLWSDNRFYSKWK 281

[Close]

BLAST of CsaV3_7G010220 vs. NCBI nr
Match: XP_022988882.1 (transcription termination factor MTEF1, chloroplastic [Cucurbita maxima])

HSP 1 Score: 412.1 bits (1058), Expect = 3.8e-111
Identity = 204/283 (72.08%), Postives = 229/283 (80.92%), Query Frame = 0


Query: 1   MAVGPPVLSHSFLALYSFSHFTTPTPTTRSRHPHLHPPSINFRTSHHQNIRYLKSLNVID 60
           MAVG   LSH F  + S SH  +PT       P   PP +NFRT+H  N+RYLKSL ++D
Sbjct: 1   MAVG--ALSHPFTTISSLSHSNSPTSRPPPSPPPSPPPFLNFRTAHSHNLRYLKSLRLLD 60

Query: 61  P-QTRFHSPDAVHQILTTVHFLKSKGFSDSDFPRLAFLCPNLFTSNFDTTDIAPVFQFLA 120
              T+F SPDAVH IL TVHFLKSKGFSDSDFP LAFLCP LF+ +FD TDIAPVF FLA
Sbjct: 61  SHSTKFRSPDAVHSILATVHFLKSKGFSDSDFPTLAFLCPQLFSPDFDPTDIAPVFDFLA 120

Query: 121 TDISASLQESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVE 180
            D+SAS+QESRG+ILRCPK+LFSDVELCL+PT RFLKQ+G+ENL +PSNL SHLLNTRVE
Sbjct: 121 ADLSASIQESRGMILRCPKLLFSDVELCLRPTLRFLKQIGLENLNTPSNLKSHLLNTRVE 180

Query: 181 KLRSKIRFFQEIGFSHEEASKVCGRMPAMFGYSVKENLKPKYEYFVKEMERDLEELKGFP 240
           KLR K RF QE+GFSHEEA+KVC RMPA+FGYSV+ENL+PKYEY V EMERDLEELK FP
Sbjct: 181 KLRGKFRFLQELGFSHEEAAKVCRRMPALFGYSVEENLRPKYEYLVNEMERDLEELKEFP 240

Query: 241 QYFGFSLEGRIMPRHLHLKQRGLHIPLNSMLLWSHNRFYSKWK 283
           QYF FSLE RI PRHLHLKQR L IPLN MLLWS  +FY+KWK
Sbjct: 241 QYFAFSLERRIAPRHLHLKQRNLRIPLNRMLLWSDQKFYTKWK 281

[Close]

BLAST of CsaV3_7G010220 vs. NCBI nr
Match: KAG7022425.1 (Transcription termination factor MTEF1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 403.7 bits (1036), Expect = 1.3e-108
Identity = 202/283 (71.38%), Postives = 232/283 (81.98%), Query Frame = 0


Query: 1   MAVGPPVLSHSFLALYSFSHFTTPTPTTRSRHPHLHPPSINFRTSHHQNIRYLKSLNVID 60
           MAVG   LS  F  + S SH  TPT    SR P   PP +NFRT+H+ N+RYLKSL+++D
Sbjct: 1   MAVG--ALSRPFTTISSLSHSNTPT----SRPP---PPFLNFRTAHYHNLRYLKSLHLLD 60

Query: 61  PQ-TRFHSPDAVHQILTTVHFLKSKGFSDSDFPRLAFLCPNLFTSNFDTTDIAPVFQFLA 120
            + T+F SPDAVH IL TVHFLKSKGFSDSDFP LAFLCP LF+ +F+ TDIAPVF FLA
Sbjct: 61  SRSTKFRSPDAVHSILATVHFLKSKGFSDSDFPTLAFLCPQLFSPDFEPTDIAPVFDFLA 120

Query: 121 TDISASLQESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVE 180
            D+SAS+QESRG+ILRCP++LFSDVELCL+PT RFLKQ+GIENL +PSNL SHLLNTRVE
Sbjct: 121 ADLSASIQESRGMILRCPRLLFSDVELCLRPTLRFLKQIGIENLNTPSNLKSHLLNTRVE 180

Query: 181 KLRSKIRFFQEIGFSHEEASKVCGRMPAMFGYSVKENLKPKYEYFVKEMERDLEELKGFP 240
           KLR K RF QE+GFSHEEA+KVC RMPA+FGYSV+ENL+PKYEY V EMERD+EELK FP
Sbjct: 181 KLRGKFRFLQELGFSHEEAAKVCRRMPAIFGYSVEENLRPKYEYLVNEMERDVEELKEFP 240

Query: 241 QYFGFSLEGRIMPRHLHLKQRGLHIPLNSMLLWSHNRFYSKWK 283
            YF FSLE RI PRHLHLKQR L IPL+ MLLWS  +FY+KWK
Sbjct: 241 HYFAFSLERRIAPRHLHLKQRNLRIPLHRMLLWSDQKFYTKWK 274

[Close]

BLAST of CsaV3_7G010220 vs. ExPASy Swiss-Prot
Match: Q84X53 (Transcription termination factor MTEF1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF1 PE=2 SV=2)

HSP 1 Score: 151.0 bits (380), Expect = 2.0e-35
Identity = 93/239 (38.91%), Postives = 140/239 (58.58%), Query Frame = 0


Query: 48  QNIRYLKSLNV-------IDPQTRFHSPDAVHQILTTVHFLKSKGFSDSDFPRLAFLCPN 107
           + + YL+ LNV       ++P  R      +  +++    L S G S     R+  + P+
Sbjct: 35  EKLIYLQDLNVDPHKALRVNPSLR---SAPISSVVSVETLLSSTGLSRPAVGRILDMFPD 94

Query: 108 LFTSNFDTTDIAPVFQFLATDISASLQESRGLILRCPKILFSDVELCLKPTHRFLKQLGI 167
           L TS+   ++I PV +FL+ +IS S Q+    I RCP++L S V+  L+P   FLK LG 
Sbjct: 95  LLTSD-PESEILPVLRFLSNEISISEQDIPKSISRCPRLLISSVDYQLRPALTFLKTLGF 154

Query: 168 ENLKSPSNLNSHLLNTRVEK-LRSKIRFFQE-IGFSHEEASKVCGRMPAMFGYSVKENLK 227
               + ++ N+ LL + VE+ L  KI + +E +GF+ EE +K+  R PA+  YSV  NL 
Sbjct: 155 VGRDTITSRNTVLLVSNVERTLIPKIEYLEEGLGFTREEVAKMVVRSPALLTYSVDNNLV 214

Query: 228 PKYEYFVKEMERDLEELKGFPQYFGFSLEGRIMPRHLHLKQRGLHIPLNSMLLWSHNRF 278
           PK E+F++EM  D++ELK FPQYF FSLE +I PRH  LK+ G+ +PL+ ML  S  +F
Sbjct: 215 PKVEFFIEEMRGDVKELKRFPQYFSFSLERKIKPRHRLLKEHGILMPLSEMLKVSDGQF 269

[Close]

BLAST of CsaV3_7G010220 vs. ExPASy Swiss-Prot
Match: F4JVI3 (Transcription termination factor MTERF5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF5 PE=1 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.4e-15
Identity = 59/202 (29.21%), Postives = 102/202 (50.50%), Query Frame = 0


Query: 77  TVHFLKSKGFSDSDFPRLAFLCPNLFTSNFDTTDIAPVFQFLATDISASLQESRGLIL-R 136
           T+ FL++ G   + + ++    P + T  +    +    +FL+   +   +E  G IL R
Sbjct: 271 TMAFLETLGIDKNQWAKIISRFPAILT--YSRQKLTSTVEFLSQ--TGLTEEQIGRILTR 330

Query: 137 CPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVEKLRSKIRFFQEIGFSH 196
           CP I+   VE  L+PT  + + L ++              +    L+    FF E GF  
Sbjct: 331 CPNIMSYSVEDKLRPTMEYFRSLNVDVAVLLHRCPQTFGLSIESNLKPVTEFFLEKGFGL 390

Query: 197 EEASKVCGRMPAMFGYSVKENLKPKYEYFVKEMERDLEELKGFPQYFGFSLEGRIMPRHL 256
           +E   +  R  A++ +S+KEN+ PK++YF + M+    EL  FPQ+FG+SL+ RI PR+ 
Sbjct: 391 DEIGIMISRYGALYTFSLKENVMPKWDYF-QTMDYPKSELVKFPQFFGYSLQERIKPRYE 450

Query: 257 HLKQRGLHIPLNSMLLWSHNRF 278
            +++ G+ + LN +L  S   F
Sbjct: 451 LVQRSGVRLLLNQVLSLSGIEF 467

[Close]

BLAST of CsaV3_7G010220 vs. ExPASy Swiss-Prot
Match: Q9FM80 (Transcription termination factor MTERF9, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF9 PE=2 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.9e-12
Identity = 64/263 (24.33%), Postives = 117/263 (44.49%), Query Frame = 0


Query: 36  HPPSINFRT-SHHQNIRYLKSLNV--------IDPQTRFHSPDAVHQILTTVHFLKSKGF 95
           H PS+     S  + + YL S+ V        +  Q +       + +   + FL   G 
Sbjct: 208 HMPSLQINVFSAQERLDYLLSVGVKHRDIKRMLLRQPQILQYTVENNLKAHISFLMGLGI 267

Query: 96  SDSDFPRLAFLCPNLFTSNFDTTDIAPVFQFLATDISASLQESRGLILRCPKILFSDVEL 155
            +S   ++    P+LF+ + + + + P  ++L  ++     +   ++   P+IL   +++
Sbjct: 268 PNSKIGQIVAATPSLFSYSVENS-LRPTIRYLIEEVGIKETDVGKVVQLSPQILVQRLDI 327

Query: 156 CLKPTHRFL-KQLGIENLKSPSNLNSH--LLNTRVEK-LRSKIRFFQEIGFSHEEASKVC 215
                + FL K+LG         +  H  LL+  ++     +I F + IG  + +  KV 
Sbjct: 328 TWNTRYMFLSKELGAPRDSVVKMVKKHPQLLHYSIDDGFLPRINFLRSIGMCNSDILKVL 387

Query: 216 GRMPAMFGYSVKENLKPKYEYFVKEMERDLEELKGFPQYFGFSLEGRIMPRHLHL----K 275
             +  +   S+++NLKPKY Y V E+  ++  L  +P Y   SL+ RI PRH  L    K
Sbjct: 388 TSLTQVLSLSLEDNLKPKYMYLVNELNNEVHILTKYPMYLSLSLDQRIRPRHRFLVELKK 447

Query: 276 QRGLHIPLNSMLLWSHNRFYSKW 282
            R    PL+S L+ +   F  +W
Sbjct: 448 VRKGPFPLSS-LVPNDESFCQQW 468

[Close]

BLAST of CsaV3_7G010220 vs. ExPASy Swiss-Prot
Match: F4IHL3 (Transcription termination factor MTERF2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF2 PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 7.8e-11
Identity = 50/197 (25.38%), Postives = 99/197 (50.25%), Query Frame = 0


Query: 85  GFSDSDFPRLAFLCPNLFTSNFDTTDIAPVFQFLATDISASLQESRGLILRCPKILFSDV 144
           G       R+  + P L+  + + T IAP  +FL  ++    +    ++++ P +L + +
Sbjct: 399 GIPKEGMKRILVVKPILYCIDLEKT-IAPKVRFL-QEMGIPNEAIGNMLVKFPSLLTNSL 458

Query: 145 ELCLKPTHRF-LKQLGI--ENLKSPSNLNSHLLNTRV-EKLRSKIRFFQEIGFSHEEASK 204
              ++P   F L + G+  +++     ++  LL   +  KL   +R++  +G    +  +
Sbjct: 459 YKKIRPVVIFLLTRAGVTQKDIGKVIAMDPALLGCSIGTKLEPNMRYYISLGIRFYQLGE 518

Query: 205 VCGRMPAMFGYSVKENLKPKYEYFVKEMERDLEELKGFPQYFGFSLEGRIMPRHLHLKQR 264
           +    P +  Y+V +NL+PKY Y  + M R L++L  FP++F +SLE RI+PRH  + + 
Sbjct: 519 MIADFPMLLRYNV-DNLRPKYRYLRRTMIRPLQDLIEFPRFFSYSLERRIIPRHTIMVEN 578

Query: 265 GLHIPLNSMLLWSHNRF 278
            ++  L  ML  +   F
Sbjct: 579 RVNFKLRYMLACTDEEF 592

[Close]

BLAST of CsaV3_7G010220 vs. ExPASy Swiss-Prot
Match: Q9SZL6 (Transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MTERF6 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.9e-09
Identity = 58/251 (23.11%), Postives = 115/251 (45.82%), Query Frame = 0


Query: 38  PSINFRTSHHQNIRYLKSLNVIDPQTRFHSPDAVHQILTTVHFLKSKGFSDSDFPRLAFL 97
           P +   +S  +N R + S     P    HS +   ++   + F ++ G  ++   ++   
Sbjct: 80  PMVECLSSLGRNPREVASAITKFPPILSHSVE--EKLCPLLAFFQALGVPETQLGKMILF 139

Query: 98  CPNLFTSNFDTTDIAPVFQFLATDISASLQES---RGLILRCPKILFSDVELCLKPTHRF 157
            P L + + D T +  +  FLA   S  L +      ++++ P ++   V+  L+PT  F
Sbjct: 140 NPRLISYSID-TKLTVIVSFLA---SLGLDQDGMIGKVLVKNPFLMGYSVDKRLRPTTEF 199

Query: 158 LKQ---LGIENLKSPSNLNSHLLNTRVEK-LRSKIRFFQEIGFSHEEASKVCGRMPAMFG 217
           LK    L  + +KS       LL   V K L+    + +E GF   + + +    P +  
Sbjct: 200 LKSSVGLSEDGIKSVVMNFPQLLCRDVNKILKPNYDYLKECGFGDSQIATMVTGYPQILI 259

Query: 218 YSVKENLKPKYEYFVKEMERDLEELKGFPQYFGFSLEGRIMPRHLHLKQRGLHIPLNSML 277
            SVK +L+P+  + V+ M R ++E+  +P++F   L+ ++  R   +K+  +   L  ML
Sbjct: 260 KSVKNSLQPRIRFLVQVMGRGMDEVASYPEFFHHGLKKKVESRFKLVKKNNIDCSLREML 319

Query: 278 LWSHNRFYSKW 282
             +  +F+ K+
Sbjct: 320 DCNTKKFHEKF 324

[Close]

BLAST of CsaV3_7G010220 vs. ExPASy TrEMBL
Match: A0A0A0K870 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G075660 PE=3 SV=1)

HSP 1 Score: 579.7 bits (1493), Expect = 6.6e-162
Identity = 282/282 (100.00%), Postives = 282/282 (100.00%), Query Frame = 0


Query: 1   MAVGPPVLSHSFLALYSFSHFTTPTPTTRSRHPHLHPPSINFRTSHHQNIRYLKSLNVID 60
           MAVGPPVLSHSFLALYSFSHFTTPTPTTRSRHPHLHPPSINFRTSHHQNIRYLKSLNVID
Sbjct: 1   MAVGPPVLSHSFLALYSFSHFTTPTPTTRSRHPHLHPPSINFRTSHHQNIRYLKSLNVID 60

Query: 61  PQTRFHSPDAVHQILTTVHFLKSKGFSDSDFPRLAFLCPNLFTSNFDTTDIAPVFQFLAT 120
           PQTRFHSPDAVHQILTTVHFLKSKGFSDSDFPRLAFLCPNLFTSNFDTTDIAPVFQFLAT
Sbjct: 61  PQTRFHSPDAVHQILTTVHFLKSKGFSDSDFPRLAFLCPNLFTSNFDTTDIAPVFQFLAT 120

Query: 121 DISASLQESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVEK 180
           DISASLQESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVEK
Sbjct: 121 DISASLQESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVEK 180

Query: 181 LRSKIRFFQEIGFSHEEASKVCGRMPAMFGYSVKENLKPKYEYFVKEMERDLEELKGFPQ 240
           LRSKIRFFQEIGFSHEEASKVCGRMPAMFGYSVKENLKPKYEYFVKEMERDLEELKGFPQ
Sbjct: 181 LRSKIRFFQEIGFSHEEASKVCGRMPAMFGYSVKENLKPKYEYFVKEMERDLEELKGFPQ 240

Query: 241 YFGFSLEGRIMPRHLHLKQRGLHIPLNSMLLWSHNRFYSKWK 283
           YFGFSLEGRIMPRHLHLKQRGLHIPLNSMLLWSHNRFYSKWK
Sbjct: 241 YFGFSLEGRIMPRHLHLKQRGLHIPLNSMLLWSHNRFYSKWK 282

[Close]

BLAST of CsaV3_7G010220 vs. ExPASy TrEMBL
Match: A0A5D3C479 (Transcription termination factor MTEF1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G00020 PE=3 SV=1)

HSP 1 Score: 537.0 bits (1382), Expect = 4.9e-149
Identity = 261/282 (92.55%), Postives = 269/282 (95.39%), Query Frame = 0


Query: 1   MAVGPPVLSHSFLALYSFSHFTTPTPTTRSRHPHLHPPSINFRTSHHQNIRYLKSLNVID 60
           MAVG PVLSHSF  + SFSHFTTPTPTTRSRHPHLHPPSINFRTSH QN+RYLKSLN+ID
Sbjct: 1   MAVGAPVLSHSFPIVSSFSHFTTPTPTTRSRHPHLHPPSINFRTSHQQNLRYLKSLNIID 60

Query: 61  PQTRFHSPDAVHQILTTVHFLKSKGFSDSDFPRLAFLCPNLFTSNFDTTDIAPVFQFLAT 120
           PQTRF SPDAV QILTTVHFLKSKGFSDSDFPRLAF CPNLFTSNFDTTDIAPVF FLA 
Sbjct: 61  PQTRFRSPDAVDQILTTVHFLKSKGFSDSDFPRLAFFCPNLFTSNFDTTDIAPVFHFLAA 120

Query: 121 DISASLQESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVEK 180
           DISAS+QESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVEK
Sbjct: 121 DISASIQESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVEK 180

Query: 181 LRSKIRFFQEIGFSHEEASKVCGRMPAMFGYSVKENLKPKYEYFVKEMERDLEELKGFPQ 240
           LR+KIRF QEIGFS+EEASKVCGRMPA+FGYSVKENL+PKYEY VK MERDLEELKGFPQ
Sbjct: 181 LRNKIRFLQEIGFSYEEASKVCGRMPAIFGYSVKENLRPKYEYLVKVMERDLEELKGFPQ 240

Query: 241 YFGFSLEGRIMPRHLHLKQRGLHIPLNSMLLWSHNRFYSKWK 283
           YFGFSLEGRIMPRHLHLKQRGLHIPLNSMLLWSHNRFYSKWK
Sbjct: 241 YFGFSLEGRIMPRHLHLKQRGLHIPLNSMLLWSHNRFYSKWK 282

[Close]

BLAST of CsaV3_7G010220 vs. ExPASy TrEMBL
Match: A0A1S3BZK0 (transcription termination factor MTEF1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495186 PE=3 SV=1)

HSP 1 Score: 537.0 bits (1382), Expect = 4.9e-149
Identity = 261/282 (92.55%), Postives = 269/282 (95.39%), Query Frame = 0


Query: 1   MAVGPPVLSHSFLALYSFSHFTTPTPTTRSRHPHLHPPSINFRTSHHQNIRYLKSLNVID 60
           MAVG PVLSHSF  + SFSHFTTPTPTTRSRHPHLHPPSINFRTSH QN+RYLKSLN+ID
Sbjct: 1   MAVGAPVLSHSFPIVSSFSHFTTPTPTTRSRHPHLHPPSINFRTSHQQNLRYLKSLNIID 60

Query: 61  PQTRFHSPDAVHQILTTVHFLKSKGFSDSDFPRLAFLCPNLFTSNFDTTDIAPVFQFLAT 120
           PQTRF SPDAV QILTTVHFLKSKGFSDSDFPRLAF CPNLFTSNFDTTDIAPVF FLA 
Sbjct: 61  PQTRFRSPDAVDQILTTVHFLKSKGFSDSDFPRLAFFCPNLFTSNFDTTDIAPVFHFLAA 120

Query: 121 DISASLQESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVEK 180
           DISAS+QESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVEK
Sbjct: 121 DISASIQESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVEK 180

Query: 181 LRSKIRFFQEIGFSHEEASKVCGRMPAMFGYSVKENLKPKYEYFVKEMERDLEELKGFPQ 240
           LR+KIRF QEIGFS+EEASKVCGRMPA+FGYSVKENL+PKYEY VK MERDLEELKGFPQ
Sbjct: 181 LRNKIRFLQEIGFSYEEASKVCGRMPAIFGYSVKENLRPKYEYLVKVMERDLEELKGFPQ 240

Query: 241 YFGFSLEGRIMPRHLHLKQRGLHIPLNSMLLWSHNRFYSKWK 283
           YFGFSLEGRIMPRHLHLKQRGLHIPLNSMLLWSHNRFYSKWK
Sbjct: 241 YFGFSLEGRIMPRHLHLKQRGLHIPLNSMLLWSHNRFYSKWK 282

[Close]

BLAST of CsaV3_7G010220 vs. ExPASy TrEMBL
Match: A0A6J1JEA2 (transcription termination factor MTEF1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111486102 PE=3 SV=1)

HSP 1 Score: 412.1 bits (1058), Expect = 1.8e-111
Identity = 204/283 (72.08%), Postives = 229/283 (80.92%), Query Frame = 0


Query: 1   MAVGPPVLSHSFLALYSFSHFTTPTPTTRSRHPHLHPPSINFRTSHHQNIRYLKSLNVID 60
           MAVG   LSH F  + S SH  +PT       P   PP +NFRT+H  N+RYLKSL ++D
Sbjct: 1   MAVG--ALSHPFTTISSLSHSNSPTSRPPPSPPPSPPPFLNFRTAHSHNLRYLKSLRLLD 60

Query: 61  P-QTRFHSPDAVHQILTTVHFLKSKGFSDSDFPRLAFLCPNLFTSNFDTTDIAPVFQFLA 120
              T+F SPDAVH IL TVHFLKSKGFSDSDFP LAFLCP LF+ +FD TDIAPVF FLA
Sbjct: 61  SHSTKFRSPDAVHSILATVHFLKSKGFSDSDFPTLAFLCPQLFSPDFDPTDIAPVFDFLA 120

Query: 121 TDISASLQESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVE 180
            D+SAS+QESRG+ILRCPK+LFSDVELCL+PT RFLKQ+G+ENL +PSNL SHLLNTRVE
Sbjct: 121 ADLSASIQESRGMILRCPKLLFSDVELCLRPTLRFLKQIGLENLNTPSNLKSHLLNTRVE 180

Query: 181 KLRSKIRFFQEIGFSHEEASKVCGRMPAMFGYSVKENLKPKYEYFVKEMERDLEELKGFP 240
           KLR K RF QE+GFSHEEA+KVC RMPA+FGYSV+ENL+PKYEY V EMERDLEELK FP
Sbjct: 181 KLRGKFRFLQELGFSHEEAAKVCRRMPALFGYSVEENLRPKYEYLVNEMERDLEELKEFP 240

Query: 241 QYFGFSLEGRIMPRHLHLKQRGLHIPLNSMLLWSHNRFYSKWK 283
           QYF FSLE RI PRHLHLKQR L IPLN MLLWS  +FY+KWK
Sbjct: 241 QYFAFSLERRIAPRHLHLKQRNLRIPLNRMLLWSDQKFYTKWK 281

[Close]

BLAST of CsaV3_7G010220 vs. ExPASy TrEMBL
Match: A0A6J1EZY9 (transcription termination factor MTEF1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111437777 PE=3 SV=1)

HSP 1 Score: 402.9 bits (1034), Expect = 1.1e-108
Identity = 202/283 (71.38%), Postives = 231/283 (81.63%), Query Frame = 0


Query: 1   MAVGPPVLSHSFLALYSFSHFTTPTPTTRSRHPHLHPPSINFRTSHHQNIRYLKSLNVID 60
           MAVG   LS  F  + S SH  TPT    SR P   PP +NFRT+H+ N+RYLKSL+++D
Sbjct: 1   MAVG--ALSRPFTTISSLSHSNTPT----SRPP---PPFLNFRTAHYHNLRYLKSLHLLD 60

Query: 61  PQ-TRFHSPDAVHQILTTVHFLKSKGFSDSDFPRLAFLCPNLFTSNFDTTDIAPVFQFLA 120
            + T+F SPDAVH IL TVHFLKSKGFSDSDFP LA LCP LF+ +FD TDIAPVF FLA
Sbjct: 61  SRSTKFRSPDAVHSILATVHFLKSKGFSDSDFPSLAILCPQLFSPDFDPTDIAPVFDFLA 120

Query: 121 TDISASLQESRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVE 180
            D+SAS+QESRG+ILRCP++LFSDVELCL+PT RFLKQ+GIENL +PSNL SHLLNTRVE
Sbjct: 121 ADLSASIQESRGMILRCPRLLFSDVELCLRPTLRFLKQIGIENLNTPSNLKSHLLNTRVE 180

Query: 181 KLRSKIRFFQEIGFSHEEASKVCGRMPAMFGYSVKENLKPKYEYFVKEMERDLEELKGFP 240
           KLR K RF QE+GFSHEEA+KVC RMPA+FGYSV+ENL+PKYEY V EMERD+EELK FP
Sbjct: 181 KLRGKFRFLQELGFSHEEAAKVCRRMPAIFGYSVEENLRPKYEYLVNEMERDVEELKEFP 240

Query: 241 QYFGFSLEGRIMPRHLHLKQRGLHIPLNSMLLWSHNRFYSKWK 283
            YF FSLE RI PRHLHLKQR L IPL+ MLLWS  +FY+KWK
Sbjct: 241 HYFAFSLERRIAPRHLHLKQRNLRIPLHRMLLWSDQKFYTKWK 274

[Close]

BLAST of CsaV3_7G010220 vs. TAIR 10
Match: AT3G18870.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 301.2 bits (770), Expect = 8.7e-82
Identity = 145/269 (53.90%), Postives = 194/269 (72.12%), Query Frame = 0


Query: 15  LYSFSHFTTPTPTTRSRHPHLHPPSINFRTSHHQNIRYLKSLNVIDPQTRFHSP-DAVHQ 74
           L   S F++P   + S+     P  + F+TSH +N+R+L SL ++    R   P + +  
Sbjct: 10  LQPLSSFSSPPSPSSSK-----PLYLKFQTSHRENLRHLSSLGIVPQNPRLAPPANDLSV 69

Query: 75  ILTTVHFLKSKGFSDSDFPRLAFLCPNLFTSNFDTTDIAPVFQFLATDISASLQESRGLI 134
           IL+ V+ LKSKG SD DFPRL FLCP LF+  FD + + PVF FL  ++ AS +ESRGLI
Sbjct: 70  ILSAVNLLKSKGISDEDFPRLVFLCPQLFSPTFDISKLDPVFDFLTGELGASAEESRGLI 129

Query: 135 LRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVEKLRSKIRFFQEIGF 194
           + CP ILFSDVE CL+PT  +LK+LG+ NL   S  N+H+LNTRVEKLR+K+RF + IGF
Sbjct: 130 VNCPNILFSDVEYCLRPTLVYLKELGVRNLNRASKTNAHVLNTRVEKLRAKMRFLKSIGF 189

Query: 195 SHEEASKVCGRMPAMFGYSVKENLKPKYEYFVKEMERDLEELKGFPQYFGFSLEGRIMPR 254
            HEEA++VCGR+PA+FGYSV++NL+PK+E+ V +MER+LEELK FPQYF FSL  RI PR
Sbjct: 190 EHEEAARVCGRIPAIFGYSVEDNLRPKFEFLVYDMERELEELKKFPQYFAFSLGKRIRPR 249

Query: 255 HLHLKQRGLHIPLNSMLLWSHNRFYSKWK 283
           H HLK++ + + L+ ML+W   +FYSKWK
Sbjct: 250 HWHLKKKNVRVSLSRMLMWGDQKFYSKWK 273

[Close]

BLAST of CsaV3_7G010220 vs. TAIR 10
Match: AT2G34620.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 162.9 bits (411), Expect = 3.7e-40
Identity = 101/270 (37.41%), Postives = 152/270 (56.30%), Query Frame = 0


Query: 17  SFSHFTTPTPTTRSRHPHLHP----PSINFRTSHHQNIRYLKSLNVIDPQTRFHSP---- 76
           S S F +  PTT   + H HP              + I  L+ + +   +    +P    
Sbjct: 22  SQSTFLSTKPTTIKTNLHSHPLFTVADQTVTLQMKEKILCLELMGIDSGKALSLNPCLCS 81

Query: 77  DAVHQILTTVHFLKSKGFSDSDFPRLAFLCPNLFTSNFDTTDIAPVFQFLATDISASLQE 136
             +  I + +HFL+SKG   +D PR+  +CP + TS+   T++ PVF FL+ D+      
Sbjct: 82  APLDSIQSVLHFLQSKGIYPNDLPRILGMCPKILTSDV-RTELYPVFMFLSNDLHVPENA 141

Query: 137 SRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVE-KLRSKIRF 196
            R +I +CP++L S VE  LKP   +L++LG+++L++ +  +  LL + VE  L  K+RF
Sbjct: 142 FRRVIKKCPRLLISSVEDQLKPALFYLQRLGLKDLEALAYQDPILLVSSVEHTLIPKLRF 201

Query: 197 FQEIGFSHEEASKVCGRMPAMFGYSVKENLKPKYEYFVKEMERDLEELKGFPQYFGFSLE 256
            + IGFS  EA  +  R PA+F +S++ N KPK +YF+ E++  LE LK FPQYF FSLE
Sbjct: 202 LESIGFSRPEAIGMILRCPALFTFSIENNFKPKLDYFMSEIKGKLENLKEFPQYFAFSLE 261

Query: 257 GRIMPRHLHLKQRGLHIPLNSMLLWSHNRF 278
            RI PRHL   +RGL +PL+ ML  +   F
Sbjct: 262 KRIKPRHLESMERGLELPLSLMLKSTDEEF 290

[Close]

BLAST of CsaV3_7G010220 vs. TAIR 10
Match: AT2G03050.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 151.0 bits (380), Expect = 1.5e-36
Identity = 93/239 (38.91%), Postives = 140/239 (58.58%), Query Frame = 0


Query: 48  QNIRYLKSLNV-------IDPQTRFHSPDAVHQILTTVHFLKSKGFSDSDFPRLAFLCPN 107
           + + YL+ LNV       ++P  R      +  +++    L S G S     R+  + P+
Sbjct: 34  EKLIYLQDLNVDPHKALRVNPSLR---SAPISSVVSVETLLSSTGLSRPAVGRILDMFPD 93

Query: 108 LFTSNFDTTDIAPVFQFLATDISASLQESRGLILRCPKILFSDVELCLKPTHRFLKQLGI 167
           L TS+   ++I PV +FL+ +IS S Q+    I RCP++L S V+  L+P   FLK LG 
Sbjct: 94  LLTSD-PESEILPVLRFLSNEISISEQDIPKSISRCPRLLISSVDYQLRPALTFLKTLGF 153

Query: 168 ENLKSPSNLNSHLLNTRVEK-LRSKIRFFQE-IGFSHEEASKVCGRMPAMFGYSVKENLK 227
               + ++ N+ LL + VE+ L  KI + +E +GF+ EE +K+  R PA+  YSV  NL 
Sbjct: 154 VGRDTITSRNTVLLVSNVERTLIPKIEYLEEGLGFTREEVAKMVVRSPALLTYSVDNNLV 213

Query: 228 PKYEYFVKEMERDLEELKGFPQYFGFSLEGRIMPRHLHLKQRGLHIPLNSMLLWSHNRF 278
           PK E+F++EM  D++ELK FPQYF FSLE +I PRH  LK+ G+ +PL+ ML  S  +F
Sbjct: 214 PKVEFFIEEMRGDVKELKRFPQYFSFSLERKIKPRHRLLKEHGILMPLSEMLKVSDGQF 268

[Close]

BLAST of CsaV3_7G010220 vs. TAIR 10
Match: AT2G36000.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 128.3 bits (321), Expect = 1.0e-29
Identity = 93/263 (35.36%), Postives = 141/263 (53.61%), Query Frame = 0


Query: 17  SFSHFTTPTPTTRSRHPHLHPPSINFRTSHHQNIRYLKSLNVIDPQTRF--HSP---DAV 76
           S S  TT T TT +             +S H+ + YL SL  ID  T    H P    A+
Sbjct: 55  SLSSTTTTTTTTET-----------LESSIHEKLIYLDSLG-IDFLTLINRHPPLLSTAL 114

Query: 77  HQILTTVHFLKSK--GFSDSDFPRLAFLCPNLFTSNFDTTDIAPVFQFLATDISA-SLQE 136
             + + V ++ +    F+  DF RL  +CP L TS   T+   PV  FL  ++   S+ +
Sbjct: 115 SAVESVVDYMTTPPINFTLQDFRRLVSMCPELLTSPL-TSHTIPVITFLLREVGVDSIFD 174

Query: 137 SRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVE-KLRSKIRF 196
            R  + R P++L   V+  L+PT  FL+++GI +     + +++LL+  V+ KL  +I +
Sbjct: 175 LRQALRRRPRLLACSVDHQLRPTLYFLQRIGILD----PHKHTYLLSCSVDNKLVPRIDY 234

Query: 197 FQEIGFSHEEASKVCGRMPAMFGYSVKENLKPKYEYFVKEMERDLEELKGFPQYFGFSLE 256
           F+++GFS   A+ +  R P +F YS+ EN +PK +Y + EM RD+ E+  FPQYF FSLE
Sbjct: 235 FEKLGFSRRSATAMFKRFPQLFNYSIAENYEPKLKYLMVEMGRDVREVLEFPQYFSFSLE 294

Query: 257 GRIMPRHLHLKQRGLHIPLNSML 271
            RI PRH     +G+  PL  ML
Sbjct: 295 NRIKPRHEACAAKGVRFPLPVML 300

[Close]

BLAST of CsaV3_7G010220 vs. TAIR 10
Match: AT2G36000.2 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 128.3 bits (321), Expect = 1.0e-29
Identity = 93/263 (35.36%), Postives = 141/263 (53.61%), Query Frame = 0


Query: 17  SFSHFTTPTPTTRSRHPHLHPPSINFRTSHHQNIRYLKSLNVIDPQTRF--HSP---DAV 76
           S S  TT T TT +             +S H+ + YL SL  ID  T    H P    A+
Sbjct: 55  SLSSTTTTTTTTET-----------LESSIHEKLIYLDSLG-IDFLTLINRHPPLLSTAL 114

Query: 77  HQILTTVHFLKSK--GFSDSDFPRLAFLCPNLFTSNFDTTDIAPVFQFLATDISA-SLQE 136
             + + V ++ +    F+  DF RL  +CP L TS   T+   PV  FL  ++   S+ +
Sbjct: 115 SAVESVVDYMTTPPINFTLQDFRRLVSMCPELLTSPL-TSHTIPVITFLLREVGVDSIFD 174

Query: 137 SRGLILRCPKILFSDVELCLKPTHRFLKQLGIENLKSPSNLNSHLLNTRVE-KLRSKIRF 196
            R  + R P++L   V+  L+PT  FL+++GI +     + +++LL+  V+ KL  +I +
Sbjct: 175 LRQALRRRPRLLACSVDHQLRPTLYFLQRIGILD----PHKHTYLLSCSVDNKLVPRIDY 234

Query: 197 FQEIGFSHEEASKVCGRMPAMFGYSVKENLKPKYEYFVKEMERDLEELKGFPQYFGFSLE 256
           F+++GFS   A+ +  R P +F YS+ EN +PK +Y + EM RD+ E+  FPQYF FSLE
Sbjct: 235 FEKLGFSRRSATAMFKRFPQLFNYSIAENYEPKLKYLMVEMGRDVREVLEFPQYFSFSLE 294

Query: 257 GRIMPRHLHLKQRGLHIPLNSML 271
            RI PRH     +G+  PL  ML
Sbjct: 295 NRIKPRHEACAAKGVRFPLPVML 300

The following BLAST results are available for this feature:

BLAST of CsaV3_7G010220 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011658929.1	1.4e-161	100.00	transcription termination factor MTEF1, chloroplastic [Cucumis sativus] >KGN4398...	[more]
XP_008454873.1	1.0e-148	92.55	PREDICTED: transcription termination factor MTEF1, chloroplastic [Cucumis melo] ...	[more]
XP_038887809.1	3.4e-128	83.69	transcription termination factor MTEF1, chloroplastic [Benincasa hispida]	[more]
XP_022988882.1	3.8e-111	72.08	transcription termination factor MTEF1, chloroplastic [Cucurbita maxima]	[more]
KAG7022425.1	1.3e-108	71.38	Transcription termination factor MTEF1, chloroplastic, partial [Cucurbita argyro...	[more]

BLAST of CsaV3_7G010220 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84X53	2.0e-35	38.91	Transcription termination factor MTEF1, chloroplastic OS=Arabidopsis thaliana OX...	[more]
F4JVI3	1.4e-15	29.21	Transcription termination factor MTERF5, chloroplastic OS=Arabidopsis thaliana O...	[more]
Q9FM80	1.9e-12	24.33	Transcription termination factor MTERF9, chloroplastic OS=Arabidopsis thaliana O...	[more]
F4IHL3	7.8e-11	25.38	Transcription termination factor MTERF2, chloroplastic OS=Arabidopsis thaliana O...	[more]
Q9SZL6	1.9e-09	23.11	Transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Arabidop...	[more]

BLAST of CsaV3_7G010220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K870	6.6e-162	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G075660 PE=3 SV=1	[more]
A0A5D3C479	4.9e-149	92.55	Transcription termination factor MTEF1 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A1S3BZK0	4.9e-149	92.55	transcription termination factor MTEF1, chloroplastic OS=Cucumis melo OX=3656 GN...	[more]
A0A6J1JEA2	1.8e-111	72.08	transcription termination factor MTEF1, chloroplastic OS=Cucurbita maxima OX=366...	[more]
A0A6J1EZY9	1.1e-108	71.38	transcription termination factor MTEF1, chloroplastic OS=Cucurbita moschata OX=3...	[more]

BLAST of CsaV3_7G010220 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18870.1	8.7e-82	53.90	Mitochondrial transcription termination factor family protein	[more]
AT2G34620.1	3.7e-40	37.41	Mitochondrial transcription termination factor family protein	[more]
AT2G03050.1	1.5e-36	38.91	Mitochondrial transcription termination factor family protein	[more]
AT2G36000.1	1.0e-29	35.36	Mitochondrial transcription termination factor family protein	[more]
AT2G36000.2	1.0e-29	35.36	Mitochondrial transcription termination factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	SMART	SM00733	mt_12	coord: 232..263 e-value: 0.08 score: 22.1 coord: 130..161 e-value: 8.7E-4 score: 28.6 coord: 166..194 e-value: 130.0 score: 10.7 coord: 199..231 e-value: 1.8E-4 score: 30.8 coord: 56..87 e-value: 1400.0 score: 2.6 coord: 92..125 e-value: 1000.0 score: 3.7
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PFAM	PF02536	mTERF	coord: 131..277 e-value: 3.7E-31 score: 108.2
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PANTHER	PTHR13068	CGI-12 PROTEIN-RELATED	coord: 23..282
IPR038538	MTERF superfamily, mitochondrial/chloroplastic	GENE3D	1.25.70.10	Transcription termination factor 3, mitochondrial	coord: 44..282 e-value: 6.0E-44 score: 152.2
None	No IPR available	PANTHER	PTHR13068:SF139	TRANSCRIPTION TERMINATION FACTOR MTEF1, CHLOROPLASTIC	coord: 23..282

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G010220.1	CsaV3_7G010220.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003690	double-stranded DNA binding