CsaV3_3G021880.1 (mRNA) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G021880.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	cation/H(+) antiporter 10-like
Location	chr3: 19012926 .. 19013246 (-)
Sequence length	321
RNA-Seq Expression	CsaV3_3G021880.1
Synteny	CsaV3_3G021880.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTCACTGCGTTCTCACCGTGCACAGTCATGCACGACGATGTATGCACATCAGCACTCGACAAGATTGCATCCCTTATAATGTTTCCTTTCCATATAACATGGACTTTTATAATACTTTTCCTTTCCATATAACATGGAGTACTTTGGATGGTTATATCAATGAAGACGACAACAAGATTAGGACATTGAACTACAGCGTCCTCGAAAGGGCTCCTGGTTCAGTCGCCATATTGGGCGACCGAGGAAATTTAGGGCGAAAAGGAGTAAAAACGCTGTCAACAAGAATGAGATCTAAATACTCGGTTGTGCATGCATGA

mRNA sequence

ATGCTTCACTGCGTTCTCACCGTGCACAGTCATGCACGACGATGTATGCACATCAGCACTCGACAAGATTGCATCCCTTATAATGTTTCCTTTCCATATAACATGGACTTTTATAATACTTTTCCTTTCCATATAACATGGAGTACTTTGGATGGTTATATCAATGAAGACGACAACAAGATTAGGACATTGAACTACAGCGTCCTCGAAAGGGCTCCTGGTTCAGTCGCCATATTGGGCGACCGAGGAAATTTAGGGCGAAAAGGAGTAAAAACGCTGTCAACAAGAATGAGATCTAAATACTCGGTTGTGCATGCATGA

Coding sequence (CDS)

ATGCTTCACTGCGTTCTCACCGTGCACAGTCATGCACGACGATGTATGCACATCAGCACTCGACAAGATTGCATCCCTTATAATGTTTCCTTTCCATATAACATGGACTTTTATAATACTTTTCCTTTCCATATAACATGGAGTACTTTGGATGGTTATATCAATGAAGACGACAACAAGATTAGGACATTGAACTACAGCGTCCTCGAAAGGGCTCCTGGTTCAGTCGCCATATTGGGCGACCGAGGAAATTTAGGGCGAAAAGGAGTAAAAACGCTGTCAACAAGAATGAGATCTAAATACTCGGTTGTGCATGCATGA

Protein sequence

MLHCVLTVHSHARRCMHISTRQDCIPYNVSFPYNMDFYNTFPFHITWSTLDGYINEDDNKIRTLNYSVLERAPGSVAILGDRGNLGRKGVKTLSTRMRSKYSVVHA*

Homology

[Close]

BLAST of CsaV3_3G021880.1 vs. NCBI nr
Match: KGN57868.1 (hypothetical protein Csa_011205 [Cucumis sativus])

HSP 1 Score: 225.7 bits (574), Expect = 1.9e-55
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MLHCVLTVHSHARRCMHISTRQDCIPYNVSFPYNMDFYNTFPFHITWSTLDGYINEDDNK 60
           MLHCVLTVHSHARRCMHISTRQDCIPYNVSFPYNMDFYNTFPFHITWSTLDGYINEDDNK
Sbjct: 1   MLHCVLTVHSHARRCMHISTRQDCIPYNVSFPYNMDFYNTFPFHITWSTLDGYINEDDNK 60

Query: 61  IRTLNYSVLERAPGSVAILGDRGNLGRKGVKTLSTRMRSKYSVVHA 107
           IRTLNYSVLERAPGSVAILGDRGNLGRKGVKTLSTRMRSKYSVVHA
Sbjct: 61  IRTLNYSVLERAPGSVAILGDRGNLGRKGVKTLSTRMRSKYSVVHA 106

[Close]

BLAST of CsaV3_3G021880.1 vs. NCBI nr
Match: XP_038904151.1 (cation/H(+) antiporter 3-like [Benincasa hispida])

HSP 1 Score: 96.3 bits (238), Expect = 1.7e-16
Identity = 48/62 (77.42%), Postives = 51/62 (82.26%), Query Frame = 0


Query: 42  PFHITWSTLDGYINEDDNKIRTLNYSVLERAPGSVAILGDRGNLGRKGVKTLSTRMRSKY 101
           PFHITW TLDGYI+EDDNKIRTLNYSVLERAP SV I  DRGNLG  G +T S+RMR  Y
Sbjct: 582 PFHITW-TLDGYIDEDDNKIRTLNYSVLERAPCSVGIFTDRGNLGLIGARTSSSRMRGTY 641

Query: 102 SV 104
           SV
Sbjct: 642 SV 642

[Close]

BLAST of CsaV3_3G021880.1 vs. NCBI nr
Match: XP_023552823.1 (cation/H(+) antiporter 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 74.3 bits (181), Expect = 7.0e-10
Identity = 38/62 (61.29%), Postives = 44/62 (70.97%), Query Frame = 0


Query: 42  PFHITWSTLDGYINEDDNKIRTLNYSVLERAPGSVAILGDRGNLGRKGVKTLSTRMRSKY 101
           PFHITW T+DG+I++DD KIR LNYSVLE+AP SV I  DRGNLGR      S+ M    
Sbjct: 505 PFHITW-TVDGFIDQDDQKIRKLNYSVLEKAPCSVGIFVDRGNLGRFRAMVSSSEMICSC 564

Query: 102 SV 104
           SV
Sbjct: 565 SV 565

[Close]

BLAST of CsaV3_3G021880.1 vs. NCBI nr
Match: KAG6576676.1 (Cation/H(+) antiporter 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 74.3 bits (181), Expect = 7.0e-10
Identity = 38/62 (61.29%), Postives = 44/62 (70.97%), Query Frame = 0


Query: 42  PFHITWSTLDGYINEDDNKIRTLNYSVLERAPGSVAILGDRGNLGRKGVKTLSTRMRSKY 101
           PFHITW T+DG+I++DD KIR LNYSVLE+AP SV I  DRGNLGR      S+ M    
Sbjct: 590 PFHITW-TVDGFIDQDDQKIRKLNYSVLEKAPCSVGIFVDRGNLGRFRAMVSSSEMICSC 649

Query: 102 SV 104
           SV
Sbjct: 650 SV 650

[Close]

BLAST of CsaV3_3G021880.1 vs. NCBI nr
Match: KAG7014725.1 (Cation/H(+) antiporter 3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 74.3 bits (181), Expect = 7.0e-10
Identity = 38/62 (61.29%), Postives = 44/62 (70.97%), Query Frame = 0


Query: 42   PFHITWSTLDGYINEDDNKIRTLNYSVLERAPGSVAILGDRGNLGRKGVKTLSTRMRSKY 101
            PFHITW T+DG+I++DD KIR LNYSVLE+AP SV I  DRGNLGR      S+ M    
Sbjct: 1384 PFHITW-TVDGFIDQDDQKIRKLNYSVLEKAPCSVGIFVDRGNLGRFRAMVSSSEMICSC 1443

Query: 102  SV 104
            SV
Sbjct: 1444 SV 1444

[Close]

BLAST of CsaV3_3G021880.1 vs. ExPASy Swiss-Prot
Match: Q58P69 (Cation/H(+) antiporter 10 OS=Arabidopsis thaliana OX=3702 GN=CHX10 PE=2 SV=2)

HSP 1 Score: 48.1 bits (113), Expect = 7.1e-05
Identity = 23/48 (47.92%), Postives = 29/48 (60.42%), Query Frame = 0


Query: 49  TLDGYINEDDNKIRTLNYSVLERAPGSVAILGDRGNLGRKGVKTLSTR 97
           T+DG    D+  IR LN S+L+RAP S+ IL DRG   RK + T   R
Sbjct: 587 TVDGLFESDNTAIRHLNQSLLDRAPCSIGILVDRGQFSRKSIVTSKKR 634

[Close]

BLAST of CsaV3_3G021880.1 vs. ExPASy Swiss-Prot
Match: Q9FYB9 (Cation/H(+) antiporter 11 OS=Arabidopsis thaliana OX=3702 GN=CHX11 PE=2 SV=2)

HSP 1 Score: 46.2 bits (108), Expect = 2.7e-04
Identity = 23/48 (47.92%), Postives = 27/48 (56.25%), Query Frame = 0


Query: 49  TLDGYINEDDNKIRTLNYSVLERAPGSVAILGDRGNLGRKGVKTLSTR 97
           T+DG    DD   R LN S+L+RAP S+ IL DRG   RK   T   R
Sbjct: 587 TVDGMFESDDLAARQLNQSLLDRAPCSIGILVDRGQFSRKSYVTSKNR 634

[Close]

BLAST of CsaV3_3G021880.1 vs. ExPASy Swiss-Prot
Match: Q9FFB8 (Cation/H(+) antiporter 3 OS=Arabidopsis thaliana OX=3702 GN=CHX3 PE=2 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 7.8e-04
Identity = 22/51 (43.14%), Postives = 30/51 (58.82%), Query Frame = 0


Query: 42  PFHITWSTLDGYINEDDNKIRTLNYSVLERAPGSVAILGDRGNLGRKGVKT 93
           PFH TWS     +  ++N IR LN SVL+ AP SV +   R + GRK + +
Sbjct: 609 PFHQTWSADGSALISNNNMIRNLNKSVLDVAPCSVGVFVYRSSSGRKNISS 659

[Close]

BLAST of CsaV3_3G021880.1 vs. ExPASy TrEMBL
Match: A0A0A0L7U0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G356580 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 9.1e-56
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MLHCVLTVHSHARRCMHISTRQDCIPYNVSFPYNMDFYNTFPFHITWSTLDGYINEDDNK 60
           MLHCVLTVHSHARRCMHISTRQDCIPYNVSFPYNMDFYNTFPFHITWSTLDGYINEDDNK
Sbjct: 1   MLHCVLTVHSHARRCMHISTRQDCIPYNVSFPYNMDFYNTFPFHITWSTLDGYINEDDNK 60

Query: 61  IRTLNYSVLERAPGSVAILGDRGNLGRKGVKTLSTRMRSKYSVVHA 107
           IRTLNYSVLERAPGSVAILGDRGNLGRKGVKTLSTRMRSKYSVVHA
Sbjct: 61  IRTLNYSVLERAPGSVAILGDRGNLGRKGVKTLSTRMRSKYSVVHA 106

[Close]

BLAST of CsaV3_3G021880.1 vs. ExPASy TrEMBL
Match: A0A6J1E4F0 (cation/H(+) antiporter 12-like OS=Cucurbita moschata OX=3662 GN=LOC111430512 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 7.6e-10
Identity = 37/62 (59.68%), Postives = 44/62 (70.97%), Query Frame = 0


Query: 42  PFHITWSTLDGYINEDDNKIRTLNYSVLERAPGSVAILGDRGNLGRKGVKTLSTRMRSKY 101
           PFHITW T+DG+I++DD KIR LNY+VLE+AP SV I  DRGNLGR      S+ M    
Sbjct: 590 PFHITW-TVDGFIDQDDQKIRKLNYNVLEKAPCSVGIFVDRGNLGRFRAMVWSSEMICSC 649

Query: 102 SV 104
           SV
Sbjct: 650 SV 650

[Close]

BLAST of CsaV3_3G021880.1 vs. ExPASy TrEMBL
Match: A0A6J1JCC2 (LOW QUALITY PROTEIN: cation/H(+) antiporter 3-like OS=Cucurbita maxima OX=3661 GN=LOC111483175 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 9.9e-10
Identity = 38/62 (61.29%), Postives = 43/62 (69.35%), Query Frame = 0


Query: 42  PFHITWSTLDGYINEDDNKIRTLNYSVLERAPGSVAILGDRGNLGRKGVKTLSTRMRSKY 101
           PFHITW T+DG+I+ DD KIR LNYSVLE+AP SV I  DRGNLGR      S+ M    
Sbjct: 592 PFHITW-TVDGFIDRDDQKIRKLNYSVLEKAPCSVGIFVDRGNLGRFRAMVSSSGMICSC 651

Query: 102 SV 104
           SV
Sbjct: 652 SV 652

[Close]

BLAST of CsaV3_3G021880.1 vs. ExPASy TrEMBL
Match: A0A5A7SH44 (Cation/H(+) antiporter 10-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2405G00030 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.8e-09
Identity = 35/62 (56.45%), Postives = 42/62 (67.74%), Query Frame = 0


Query: 42  PFHITWSTLDGYINEDDNKIRTLNYSVLERAPGSVAILGDRGNLGRKGVKTLSTRMRSKY 101
           PFHITW T+DGYI   DN +R LNY+VL+RAP S+ I  DRG L     +  S+RM S Y
Sbjct: 580 PFHITW-TMDGYIERVDNNVRILNYNVLKRAPCSIGIFIDRGKLEHIRARMSSSRMTSSY 639

Query: 102 SV 104
           SV
Sbjct: 640 SV 640

[Close]

BLAST of CsaV3_3G021880.1 vs. ExPASy TrEMBL
Match: A0A5D3E918 (Cation/H(+) antiporter 10-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold788G00050 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.8e-09
Identity = 35/62 (56.45%), Postives = 42/62 (67.74%), Query Frame = 0


Query: 42  PFHITWSTLDGYINEDDNKIRTLNYSVLERAPGSVAILGDRGNLGRKGVKTLSTRMRSKY 101
           PFHITW T+DGYI   DN +R LNY+VL+RAP S+ I  DRG L     +  S+RM S Y
Sbjct: 580 PFHITW-TMDGYIERVDNNVRILNYNVLKRAPCSIGIFIDRGKLEHIRARMSSSRMTSSY 639

Query: 102 SV 104
           SV
Sbjct: 640 SV 640

[Close]

BLAST of CsaV3_3G021880.1 vs. TAIR 10
Match: AT3G44930.1 (cation/H+ exchanger 10 )

HSP 1 Score: 48.1 bits (113), Expect = 5.0e-06
Identity = 23/48 (47.92%), Postives = 29/48 (60.42%), Query Frame = 0


Query: 49  TLDGYINEDDNKIRTLNYSVLERAPGSVAILGDRGNLGRKGVKTLSTR 97
           T+DG    D+  IR LN S+L+RAP S+ IL DRG   RK + T   R
Sbjct: 587 TVDGLFESDNTAIRHLNQSLLDRAPCSIGILVDRGQFSRKSIVTSKKR 634

[Close]

BLAST of CsaV3_3G021880.1 vs. TAIR 10
Match: AT3G44920.1 (cation/H+ exchanger 11 )

HSP 1 Score: 46.2 bits (108), Expect = 1.9e-05
Identity = 23/48 (47.92%), Postives = 27/48 (56.25%), Query Frame = 0


Query: 49  TLDGYINEDDNKIRTLNYSVLERAPGSVAILGDRGNLGRKGVKTLSTR 97
           T+DG    DD   R LN S+L+RAP S+ IL DRG   RK   T   R
Sbjct: 587 TVDGMFESDDLAARQLNQSLLDRAPCSIGILVDRGQFSRKSYVTSKNR 634

[Close]

BLAST of CsaV3_3G021880.1 vs. TAIR 10
Match: AT5G22900.1 (cation/H+ exchanger 3 )

HSP 1 Score: 44.7 bits (104), Expect = 5.5e-05
Identity = 22/51 (43.14%), Postives = 30/51 (58.82%), Query Frame = 0


Query: 42  PFHITWSTLDGYINEDDNKIRTLNYSVLERAPGSVAILGDRGNLGRKGVKT 93
           PFH TWS     +  ++N IR LN SVL+ AP SV +   R + GRK + +
Sbjct: 609 PFHQTWSADGSALISNNNMIRNLNKSVLDVAPCSVGVFVYRSSSGRKNISS 659

[Close]

BLAST of CsaV3_3G021880.1 vs. TAIR 10
Match: AT2G30240.1 (Cation/hydrogen exchanger family protein )

HSP 1 Score: 42.7 bits (99), Expect = 2.1e-04
Identity = 24/55 (43.64%), Postives = 35/55 (63.64%), Query Frame = 0


Query: 42  PFHITWSTLDGYINEDDNKIRTLNYSVLERAPGSVAILGDRGNL-GRKGVKTLST 96
           PFH  ++ +DG + + +  IRT+N +VL+ AP SVAI  DRG   GR+ V   +T
Sbjct: 589 PFHKQYA-IDGTVGQVNGPIRTINLNVLDAAPCSVAIFIDRGETEGRRSVLMTNT 642

[Close]

BLAST of CsaV3_3G021880.1 vs. TAIR 10
Match: AT3G44910.1 (cation/H+ exchanger 12 )

HSP 1 Score: 41.2 bits (95), Expect = 6.1e-04
Identity = 20/43 (46.51%), Postives = 26/43 (60.47%), Query Frame = 0


Query: 49  TLDGYINEDDNKIRTLNYSVLERAPGSVAILGDRGNLGRKGVK 92
           T+DG    +D  IR LN S+L+ A  S+ IL DRG L  KG +
Sbjct: 578 TVDGAFESEDEAIRRLNESLLKSASCSIGILVDRGQLSLKGTR 620

The following BLAST results are available for this feature:

BLAST of CsaV3_3G021880.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57868.1	1.9e-55	100.00	hypothetical protein Csa_011205 [Cucumis sativus]	[more]
XP_038904151.1	1.7e-16	77.42	cation/H(+) antiporter 3-like [Benincasa hispida]	[more]
XP_023552823.1	7.0e-10	61.29	cation/H(+) antiporter 3-like [Cucurbita pepo subsp. pepo]	[more]
KAG6576676.1	7.0e-10	61.29	Cation/H(+) antiporter 3, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7014725.1	7.0e-10	61.29	Cation/H(+) antiporter 3, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of CsaV3_3G021880.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q58P69	7.1e-05	47.92	Cation/H(+) antiporter 10 OS=Arabidopsis thaliana OX=3702 GN=CHX10 PE=2 SV=2	[more]
Q9FYB9	2.7e-04	47.92	Cation/H(+) antiporter 11 OS=Arabidopsis thaliana OX=3702 GN=CHX11 PE=2 SV=2	[more]
Q9FFB8	7.8e-04	43.14	Cation/H(+) antiporter 3 OS=Arabidopsis thaliana OX=3702 GN=CHX3 PE=2 SV=1	[more]

BLAST of CsaV3_3G021880.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7U0	9.1e-56	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G356580 PE=4 SV=1	[more]
A0A6J1E4F0	7.6e-10	59.68	cation/H(+) antiporter 12-like OS=Cucurbita moschata OX=3662 GN=LOC111430512 PE=...	[more]
A0A6J1JCC2	9.9e-10	61.29	LOW QUALITY PROTEIN: cation/H(+) antiporter 3-like OS=Cucurbita maxima OX=3661 G...	[more]
A0A5A7SH44	3.8e-09	56.45	Cation/H(+) antiporter 10-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A5D3E918	3.8e-09	56.45	Cation/H(+) antiporter 10-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]

BLAST of CsaV3_3G021880.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G44930.1	5.0e-06	47.92	cation/H+ exchanger 10	[more]
AT3G44920.1	1.9e-05	47.92	cation/H+ exchanger 11	[more]
AT5G22900.1	5.5e-05	43.14	cation/H+ exchanger 3	[more]
AT2G30240.1	2.1e-04	43.64	Cation/hydrogen exchanger family protein	[more]
AT3G44910.1	6.1e-04	46.51	cation/H+ exchanger 12	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_3G021880	CsaV3_3G021880	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_3G021880.1.exon1	CsaV3_3G021880.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_3G021880.1.cds1	CsaV3_3G021880.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_3G021880.1	CsaV3_3G021880.1-protein	polypeptide