Tan0020184.1 (mRNA) Snake gourd v1

Overview


Name	Tan0020184.1
Type	mRNA
Organism	Trichosanthes anguina (Snake gourd v1)
Description	EF hand calcium-binding family protein
Location	LG11: 12446663 .. 12446917 (-)
Sequence length	255
RNA-Seq Expression	Tan0020184.1
Synteny	Tan0020184.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGATGATCCTCAAGACCAAGCTGAACGTGAACGCATTTTCAAGCGCTTCGACGCCAATGGCGACGGTAAGATCTCTGCAACCGAGCTCGGGGAAGCCTTGAAGACGCTCGGTTCTGTCACTGCCGACGAAGTGCAGCGGATGATGGCCGAGATCGACACCGATGGCGACGGTTTCATTTCGTTCGAAGAGTTCACAGATTTTGCCCGTGCCAACCGTGGATTAGTCAAGGATGTTGGAAAGATATTCTAA

mRNA sequence

ATGGCTGATGATCCTCAAGACCAAGCTGAACGTGAACGCATTTTCAAGCGCTTCGACGCCAATGGCGACGGTAAGATCTCTGCAACCGAGCTCGGGGAAGCCTTGAAGACGCTCGGTTCTGTCACTGCCGACGAAGTGCAGCGGATGATGGCCGAGATCGACACCGATGGCGACGGTTTCATTTCGTTCGAAGAGTTCACAGATTTTGCCCGTGCCAACCGTGGATTAGTCAAGGATGTTGGAAAGATATTCTAA

Coding sequence (CDS)

ATGGCTGATGATCCTCAAGACCAAGCTGAACGTGAACGCATTTTCAAGCGCTTCGACGCCAATGGCGACGGTAAGATCTCTGCAACCGAGCTCGGGGAAGCCTTGAAGACGCTCGGTTCTGTCACTGCCGACGAAGTGCAGCGGATGATGGCCGAGATCGACACCGATGGCGACGGTTTCATTTCGTTCGAAGAGTTCACAGATTTTGCCCGTGCCAACCGTGGATTAGTCAAGGATGTTGGAAAGATATTCTAA

Protein sequence

MADDPQDQAERERIFKRFDANGDGKISATELGEALKTLGSVTADEVQRMMAEIDTDGDGFISFEEFTDFARANRGLVKDVGKIF

Homology

[Close]

BLAST of Tan0020184.1 vs. ExPASy Swiss-Prot
Match: O81092 (Polcalcin Ole e 3 OS=Olea europaea OX=4146 GN=OLE3 PE=1 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 8.8e-35
Identity = 73/84 (86.90%), Postives = 78/84 (92.86%), Query Frame = 0


Query: 1  MADDPQDQAERERIFKRFDANGDGKISATELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60
          MADDPQ+ AE ERIFKRFDANGDGKIS++ELGE LKTLGSVT +E+QRMMAEIDTDGDGF
Sbjct: 1  MADDPQEVAEHERIFKRFDANGDGKISSSELGETLKTLGSVTPEEIQRMMAEIDTDGDGF 60

Query: 61 ISFEEFTDFARANRGLVKDVGKIF 85
          ISFEEFT FARANRGLVKDV KIF
Sbjct: 61 ISFEEFTVFARANRGLVKDVAKIF 84

[Close]

BLAST of Tan0020184.1 vs. ExPASy Swiss-Prot
Match: Q39419 (Polcalcin Bet v 4 OS=Betula pendula OX=3505 GN=BETV4 PE=1 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 8.8e-35
Identity = 74/85 (87.06%), Postives = 79/85 (92.94%), Query Frame = 0


Query: 1  MADD-PQDQAERERIFKRFDANGDGKISATELGEALKTLGSVTADEVQRMMAEIDTDGDG 60
          MADD PQD+AERERIFKRFDANGDGKISA ELGEALKTLGS+T DEV+ MMAEIDTDGDG
Sbjct: 1  MADDHPQDKAERERIFKRFDANGDGKISAAELGEALKTLGSITPDEVKHMMAEIDTDGDG 60

Query: 61 FISFEEFTDFARANRGLVKDVGKIF 85
          FISF+EFTDF RANRGL+KDV KIF
Sbjct: 61 FISFQEFTDFGRANRGLLKDVAKIF 85

[Close]

BLAST of Tan0020184.1 vs. ExPASy Swiss-Prot
Match: Q84V36 (Polcalcin Che a 3 OS=Chenopodium album OX=3559 PE=1 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 7.4e-34
Identity = 71/82 (86.59%), Postives = 77/82 (93.90%), Query Frame = 0


Query: 3  DDPQDQAERERIFKRFDANGDGKISATELGEALKTLGSVTADEVQRMMAEIDTDGDGFIS 62
          D PQD A+RERIFKRFD NGDGKIS++ELG+ALKTLGSVT DEV+RMMAEIDTDGDGFIS
Sbjct: 5  DTPQDIADRERIFKRFDTNGDGKISSSELGDALKTLGSVTPDEVRRMMAEIDTDGDGFIS 64

Query: 63 FEEFTDFARANRGLVKDVGKIF 85
          F+EFTDFARANRGLVKDV KIF
Sbjct: 65 FDEFTDFARANRGLVKDVSKIF 86

[Close]

BLAST of Tan0020184.1 vs. ExPASy Swiss-Prot
Match: O81701 (Polcalcin Aln g 4 OS=Alnus glutinosa OX=3517 PE=1 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 7.4e-34
Identity = 74/85 (87.06%), Postives = 79/85 (92.94%), Query Frame = 0


Query: 1  MADD-PQDQAERERIFKRFDANGDGKISATELGEALKTLGSVTADEVQRMMAEIDTDGDG 60
          MADD PQDQAE ERIFK FDANGDGKISA+ELG+ALKTLGSVT DEV+ MMAEIDTDGDG
Sbjct: 1  MADDHPQDQAEHERIFKCFDANGDGKISASELGDALKTLGSVTPDEVKHMMAEIDTDGDG 60

Query: 61 FISFEEFTDFARANRGLVKDVGKIF 85
          FISF+EFT+FARANRGLVKDV KIF
Sbjct: 61 FISFQEFTNFARANRGLVKDVAKIF 85

[Close]

BLAST of Tan0020184.1 vs. ExPASy Swiss-Prot
Match: Q8VWY6 (Polcalcin Nic t 1 OS=Nicotiana tabacum OX=4097 GN=Nict1 PE=1 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 2.4e-32
Identity = 66/84 (78.57%), Postives = 76/84 (90.48%), Query Frame = 0


Query: 1  MADDPQDQAERERIFKRFDANGDGKISATELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60
          MA+DPQD A+RERIFKRFD NGDGKIS+ ELGE LK LGSVT++EVQ MMAE+DTDGDGF
Sbjct: 1  MAEDPQDIADRERIFKRFDLNGDGKISSAELGETLKMLGSVTSEEVQHMMAELDTDGDGF 60

Query: 61 ISFEEFTDFARANRGLVKDVGKIF 85
          IS+EEF +FARANRGL+KDV K+F
Sbjct: 61 ISYEEFEEFARANRGLIKDVAKVF 84

[Close]

BLAST of Tan0020184.1 vs. NCBI nr
Match: XP_038875780.1 (polcalcin Ole e 3 [Benincasa hispida])

HSP 1 Score: 162.2 bits (409), Expect = 2.0e-36
Identity = 81/84 (96.43%), Postives = 83/84 (98.81%), Query Frame = 0


Query: 1  MADDPQDQAERERIFKRFDANGDGKISATELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60
          MADDPQDQAERERIFKRFDANGDGKISA+ELGEALKTLGSVTADEVQRMMAEIDTDGDGF
Sbjct: 1  MADDPQDQAERERIFKRFDANGDGKISASELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60

Query: 61 ISFEEFTDFARANRGLVKDVGKIF 85
          IS+EEFTDFARANRGLVKDV KIF
Sbjct: 61 ISYEEFTDFARANRGLVKDVAKIF 84

[Close]

BLAST of Tan0020184.1 vs. NCBI nr
Match: XP_016902555.1 (PREDICTED: polcalcin Ole e 3 [Cucumis melo] >KAA0062328.1 polcalcin Ole e 3 [Cucumis melo var. makuwa])

HSP 1 Score: 161.0 bits (406), Expect = 4.5e-36
Identity = 80/84 (95.24%), Postives = 83/84 (98.81%), Query Frame = 0


Query: 1  MADDPQDQAERERIFKRFDANGDGKISATELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60
          MADDPQDQAERERIFKRFDANGDGKIS++ELGEALKTLGSVTADEVQRMMAEIDTDGDGF
Sbjct: 1  MADDPQDQAERERIFKRFDANGDGKISSSELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60

Query: 61 ISFEEFTDFARANRGLVKDVGKIF 85
          IS+EEFTDFARANRGLVKDV KIF
Sbjct: 61 ISYEEFTDFARANRGLVKDVAKIF 84

[Close]

BLAST of Tan0020184.1 vs. NCBI nr
Match: XP_004140303.1 (polcalcin Ole e 3 [Cucumis sativus])

HSP 1 Score: 160.6 bits (405), Expect = 5.8e-36
Identity = 80/84 (95.24%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 1  MADDPQDQAERERIFKRFDANGDGKISATELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60
          MADDPQDQAERERIFKRFDANGDGKIS+ ELGEALKTLGSVTADEVQRMMAEIDTDGDGF
Sbjct: 1  MADDPQDQAERERIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60

Query: 61 ISFEEFTDFARANRGLVKDVGKIF 85
          IS+EEFTDFARANRGLVKDV KIF
Sbjct: 61 ISYEEFTDFARANRGLVKDVAKIF 84

[Close]

BLAST of Tan0020184.1 vs. NCBI nr
Match: XP_022141635.1 (polcalcin Bet v 4 [Momordica charantia])

HSP 1 Score: 157.5 bits (397), Expect = 4.9e-35
Identity = 78/84 (92.86%), Postives = 81/84 (96.43%), Query Frame = 0


Query: 1  MADDPQDQAERERIFKRFDANGDGKISATELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60
          MADDPQD+ ER+RIFKRFDANGDGKISA ELGEALKTLGSVTADEVQRMMAEIDTDGDGF
Sbjct: 1  MADDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60

Query: 61 ISFEEFTDFARANRGLVKDVGKIF 85
          IS+EEFTDFARANRGLVKDV KIF
Sbjct: 61 ISYEEFTDFARANRGLVKDVAKIF 84

[Close]

BLAST of Tan0020184.1 vs. NCBI nr
Match: XP_028068996.1 (polcalcin Bet v 4 [Camellia sinensis])

HSP 1 Score: 153.7 bits (387), Expect = 7.1e-34
Identity = 75/82 (91.46%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 3  DDPQDQAERERIFKRFDANGDGKISATELGEALKTLGSVTADEVQRMMAEIDTDGDGFIS 62
          DDPQD+AERERIFKRFDANGDGKISA+ELG+ALK LGSVT DE+QRMMAEIDTDGDGFIS
Sbjct: 4  DDPQDKAERERIFKRFDANGDGKISASELGDALKALGSVTPDEIQRMMAEIDTDGDGFIS 63

Query: 63 FEEFTDFARANRGLVKDVGKIF 85
          F+EFTDFARANRGLVKDVGKIF
Sbjct: 64 FQEFTDFARANRGLVKDVGKIF 85

[Close]

BLAST of Tan0020184.1 vs. ExPASy TrEMBL
Match: A0A5A7V407 (Polcalcin Ole e 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G00810 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.2e-36
Identity = 80/84 (95.24%), Postives = 83/84 (98.81%), Query Frame = 0


Query: 1  MADDPQDQAERERIFKRFDANGDGKISATELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60
          MADDPQDQAERERIFKRFDANGDGKIS++ELGEALKTLGSVTADEVQRMMAEIDTDGDGF
Sbjct: 1  MADDPQDQAERERIFKRFDANGDGKISSSELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60

Query: 61 ISFEEFTDFARANRGLVKDVGKIF 85
          IS+EEFTDFARANRGLVKDV KIF
Sbjct: 61 ISYEEFTDFARANRGLVKDVAKIF 84

[Close]

BLAST of Tan0020184.1 vs. ExPASy TrEMBL
Match: A0A1S4E3J8 (polcalcin Ole e 3 OS=Cucumis melo OX=3656 GN=LOC103499320 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.2e-36
Identity = 80/84 (95.24%), Postives = 83/84 (98.81%), Query Frame = 0


Query: 1  MADDPQDQAERERIFKRFDANGDGKISATELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60
          MADDPQDQAERERIFKRFDANGDGKIS++ELGEALKTLGSVTADEVQRMMAEIDTDGDGF
Sbjct: 1  MADDPQDQAERERIFKRFDANGDGKISSSELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60

Query: 61 ISFEEFTDFARANRGLVKDVGKIF 85
          IS+EEFTDFARANRGLVKDV KIF
Sbjct: 61 ISYEEFTDFARANRGLVKDVAKIF 84

[Close]

BLAST of Tan0020184.1 vs. ExPASy TrEMBL
Match: A0A0A0KQB8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G420320 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.8e-36
Identity = 80/84 (95.24%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 1  MADDPQDQAERERIFKRFDANGDGKISATELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60
          MADDPQDQAERERIFKRFDANGDGKIS+ ELGEALKTLGSVTADEVQRMMAEIDTDGDGF
Sbjct: 1  MADDPQDQAERERIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60

Query: 61 ISFEEFTDFARANRGLVKDVGKIF 85
          IS+EEFTDFARANRGLVKDV KIF
Sbjct: 61 ISYEEFTDFARANRGLVKDVAKIF 84

[Close]

BLAST of Tan0020184.1 vs. ExPASy TrEMBL
Match: A0A6J1CIN1 (polcalcin Bet v 4 OS=Momordica charantia OX=3673 GN=LOC111011942 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 2.4e-35
Identity = 78/84 (92.86%), Postives = 81/84 (96.43%), Query Frame = 0


Query: 1  MADDPQDQAERERIFKRFDANGDGKISATELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60
          MADDPQD+ ER+RIFKRFDANGDGKISA ELGEALKTLGSVTADEVQRMMAEIDTDGDGF
Sbjct: 1  MADDPQDKVERDRIFKRFDANGDGKISAAELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60

Query: 61 ISFEEFTDFARANRGLVKDVGKIF 85
          IS+EEFTDFARANRGLVKDV KIF
Sbjct: 61 ISYEEFTDFARANRGLVKDVAKIF 84

[Close]

BLAST of Tan0020184.1 vs. ExPASy TrEMBL
Match: A0A2I0KIR2 (polcalcin Ole e 3 OS=Punica granatum OX=22663 GN=LOC116204749 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 2.2e-33
Identity = 75/84 (89.29%), Postives = 80/84 (95.24%), Query Frame = 0


Query: 1  MADDPQDQAERERIFKRFDANGDGKISATELGEALKTLGSVTADEVQRMMAEIDTDGDGF 60
          MADDPQ+ AERERIFKRFDANGDGKIS+ ELG+ALKTLGSVTA+EVQRMMAEIDTDGDGF
Sbjct: 1  MADDPQEVAERERIFKRFDANGDGKISSAELGDALKTLGSVTAEEVQRMMAEIDTDGDGF 60

Query: 61 ISFEEFTDFARANRGLVKDVGKIF 85
          IS EEFTDFARANRGL+KDV KIF
Sbjct: 61 ISHEEFTDFARANRGLMKDVAKIF 84

[Close]

BLAST of Tan0020184.1 vs. TAIR 10
Match: AT5G17480.1 (pollen calcium-binding protein 1 )

HSP 1 Score: 129.0 bits (323), Expect = 1.8e-30
Identity = 64/81 (79.01%), Postives = 73/81 (90.12%), Query Frame = 0


Query: 4  DPQDQAERERIFKRFDANGDGKISATELGEALKTLGSVTADEVQRMMAEIDTDGDGFISF 63
          D  ++AE +RIFK+FDANGDGKISA EL EALKTLGSVTAD+V+RMMAEIDTDGDG IS+
Sbjct: 3  DATEKAEHDRIFKKFDANGDGKISAAELEEALKTLGSVTADDVKRMMAEIDTDGDGNISY 62

Query: 64 EEFTDFARANRGLVKDVGKIF 85
          +EFTDFA ANRGL+KDV KIF
Sbjct: 63 QEFTDFAGANRGLMKDVAKIF 83

[Close]

BLAST of Tan0020184.1 vs. TAIR 10
Match: AT3G03430.1 (Calcium-binding EF-hand family protein )

HSP 1 Score: 125.2 bits (313), Expect = 2.5e-29
Identity = 59/81 (72.84%), Postives = 72/81 (88.89%), Query Frame = 0


Query: 4  DPQDQAERERIFKRFDANGDGKISATELGEALKTLGSVTADEVQRMMAEIDTDGDGFISF 63
          D  ++AE +RIFK+FDANGDGKISA ELG+ALK LGSVT ++++RMMAEIDTDGDG+IS+
Sbjct: 3  DATEKAEHDRIFKKFDANGDGKISAAELGDALKNLGSVTHEDIKRMMAEIDTDGDGYISY 62

Query: 64 EEFTDFARANRGLVKDVGKIF 85
          +EF DFA ANRGL+KDV KIF
Sbjct: 63 QEFIDFASANRGLMKDVAKIF 83

[Close]

BLAST of Tan0020184.1 vs. TAIR 10
Match: AT1G73630.1 (EF hand calcium-binding protein family )

HSP 1 Score: 70.9 bits (172), Expect = 5.7e-13
Identity = 35/75 (46.67%), Postives = 50/75 (66.67%), Query Frame = 0


Query: 5  PQDQAERERIFKRFDANGDGKISATELGEALKTLG-SVTADEVQRMMAEIDTDGDGFISF 64
          P    E +++F +FDANGDGKIS +ELG   K++G S T +E+ R++ EID D DGFI+ 
Sbjct: 15 PSTDMELKKVFDKFDANGDGKISVSELGNVFKSMGTSYTEEELNRVLDEIDIDCDGFINQ 74

Query: 65 EEFTDFARANRGLVK 79
          EEF    R++   V+
Sbjct: 75 EEFATICRSSSSAVE 89

[Close]

BLAST of Tan0020184.1 vs. TAIR 10
Match: AT1G24620.1 (EF hand calcium-binding protein family )

HSP 1 Score: 65.5 bits (158), Expect = 2.4e-11
Identity = 31/60 (51.67%), Postives = 44/60 (73.33%), Query Frame = 0


Query: 10 ERERIFKRFDANGDGKISATELGEALKTLG-SVTADEVQRMMAEIDTDGDGFISFEEFTD 69
          E E +FK+FD NGDGKIS+ ELG  + +LG  V  +E+++ + EID  GDG+I+FEEF +
Sbjct: 37 ELEAVFKKFDVNGDGKISSKELGAIMTSLGHEVPEEELEKAITEIDRKGDGYINFEEFVE 96

[Close]

BLAST of Tan0020184.1 vs. TAIR 10
Match: AT1G18210.1 (Calcium-binding EF-hand family protein )

HSP 1 Score: 64.7 bits (156), Expect = 4.1e-11
Identity = 31/71 (43.66%), Postives = 48/71 (67.61%), Query Frame = 0


Query: 4  DPQDQAERERIFKRFDANGDGKISATELGEALKTLG-SVTADEVQRMMAEIDTDGDGFIS 63
          D  +  E +++F +FD+NGDGKIS  ELG   K +G S T  E+ R++ E+DTD DG+I+
Sbjct: 17 DMANPEELKKVFDQFDSNGDGKISVLELGGVFKAMGTSYTETELNRVLEEVDTDRDGYIN 76

Query: 64 FEEFTDFARAN 74
           +EF+   R++
Sbjct: 77 LDEFSTLCRSS 87

The following BLAST results are available for this feature:

BLAST of Tan0020184.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O81092	8.8e-35	86.90	Polcalcin Ole e 3 OS=Olea europaea OX=4146 GN=OLE3 PE=1 SV=1	[more]
Q39419	8.8e-35	87.06	Polcalcin Bet v 4 OS=Betula pendula OX=3505 GN=BETV4 PE=1 SV=1	[more]
Q84V36	7.4e-34	86.59	Polcalcin Che a 3 OS=Chenopodium album OX=3559 PE=1 SV=1	[more]
O81701	7.4e-34	87.06	Polcalcin Aln g 4 OS=Alnus glutinosa OX=3517 PE=1 SV=1	[more]
Q8VWY6	2.4e-32	78.57	Polcalcin Nic t 1 OS=Nicotiana tabacum OX=4097 GN=Nict1 PE=1 SV=1	[more]

BLAST of Tan0020184.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038875780.1	2.0e-36	96.43	polcalcin Ole e 3 [Benincasa hispida]	[more]
XP_016902555.1	4.5e-36	95.24	PREDICTED: polcalcin Ole e 3 [Cucumis melo] >KAA0062328.1 polcalcin Ole e 3 [Cuc...	[more]
XP_004140303.1	5.8e-36	95.24	polcalcin Ole e 3 [Cucumis sativus]	[more]
XP_022141635.1	4.9e-35	92.86	polcalcin Bet v 4 [Momordica charantia]	[more]
XP_028068996.1	7.1e-34	91.46	polcalcin Bet v 4 [Camellia sinensis]	[more]

BLAST of Tan0020184.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V407	2.2e-36	95.24	Polcalcin Ole e 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G00...	[more]
A0A1S4E3J8	2.2e-36	95.24	polcalcin Ole e 3 OS=Cucumis melo OX=3656 GN=LOC103499320 PE=4 SV=1	[more]
A0A0A0KQB8	2.8e-36	95.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G420320 PE=4 SV=1	[more]
A0A6J1CIN1	2.4e-35	92.86	polcalcin Bet v 4 OS=Momordica charantia OX=3673 GN=LOC111011942 PE=4 SV=1	[more]
A0A2I0KIR2	2.2e-33	89.29	polcalcin Ole e 3 OS=Punica granatum OX=22663 GN=LOC116204749 PE=4 SV=1	[more]

BLAST of Tan0020184.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G17480.1	1.8e-30	79.01	pollen calcium-binding protein 1	[more]
AT3G03430.1	2.5e-29	72.84	Calcium-binding EF-hand family protein	[more]
AT1G73630.1	5.7e-13	46.67	EF hand calcium-binding protein family	[more]
AT1G24620.1	2.4e-11	51.67	EF hand calcium-binding protein family	[more]
AT1G18210.1	4.1e-11	43.66	Calcium-binding EF-hand family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002048	EF-hand domain	SMART	SM00054	efh_1	coord: 45..73 e-value: 1.2E-6 score: 38.0 coord: 10..38 e-value: 4.7E-4 score: 29.5
IPR002048	EF-hand domain	PFAM	PF13499	EF-hand_7	coord: 13..70 e-value: 1.9E-15 score: 57.1
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 44..76 score: 13.007053
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 6..41 score: 14.652882
IPR002048	EF-hand domain	CDD	cd00051	EFh	coord: 12..71 e-value: 2.82289E-17 score: 66.8025
None	No IPR available	GENE3D	1.10.238.10		coord: 2..84 e-value: 2.7E-27 score: 96.5
None	No IPR available	PANTHER	PTHR23064	TROPONIN	coord: 1..84
None	No IPR available	PANTHER	PTHR23064:SF60	POLCALCIN NIC T 1	coord: 1..84
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 19..31
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 54..66
IPR011992	EF-hand domain pair	SUPERFAMILY	47473	EF-hand	coord: 8..70

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Tan0020184	Tan0020184	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0020184.1-cds	Tan0020184.1-cds-LG11:12446663..12446917	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0020184.1-exon	Tan0020184.1-exon-LG11:12446663..12446917	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Tan0020184.1	Tan0020184.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
cellular_component	GO:0012505	endomembrane system
molecular_function	GO:0005509	calcium ion binding