Tan0019867.1 (mRNA) Snake gourd v1

Overview


Name	Tan0019867.1
Type	mRNA
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Actin-depolymerizing factor
Location	LG05: 10425896 .. 10427199 (-)
Sequence length	780
RNA-Seq Expression	Tan0019867.1
Synteny	Tan0019867.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAATTTTCATAGCTCGGACAAGTTCCCGACGAGACCTCACAAATTCACAATGGCGATGGCTTTCAAGATGGTATTAATTTATACACTTCGATTGTTGCTCTTTCTTCTTTTTTTCTTTCTTGATTCTGGAATTTTGATTCTGATTCGATTTGTTAACGGCGAATCTCAGGCAACCACTGGAATGTGGGTGAGCGATGAGTGCAAGAATTCGTTCATGGAAATGAAATGGAAGAAGGTGCATCGGTATATTGTGTTTAAGATCGATGAAGGATCGAGGTTAGTTACTGTGGACAAGGTTGGCGGTCCAGCCGAAAGCTACGATGATCTCACCGCGTCATTGCCGACCGACGACTGTCGATATGCGGTGTTCGATTTCGACTTCGTCACCGTTGATAATTGCCGGAAGAGCAAGATCTTCTTTATCGCCTGGTATGTTGCTCGATTCTTTTGCTGTTTTTCATCGATCGCCTCCGTTCTTGATTCATCTAACCTCTGCTTCAGTAGAATCATCCAATTCTCTCTGATTACTTGCATCTTGCGAGATACACTTCTGTTTGGTCGAGAATTCTGACAAATTCGACTCAAATTTTCCTCAAATTCATAATCTCTAATTCTGTTATAGAGCCTAACTAATTACATGTTCAGAGCAGCATAATCACACATCTGATCGTTATCTGGAATCGAATTTCTCTGAAAAAAAACAAACCGATTATGTGATTGTTCGTTTTCTCTACAAAGAATTTTGCAATCGAGTCTGTAATGCAAGGATTTGGAGGACGGATCTGAATCTGAATCTGAATCTGAATCTGAAACTGAAACTGAAACTGTTCGTTTGGTTAATTAATCTGGTGCAGGTCGCCGACCGCATCAAGAATTAGAGCTAAAATTCTATACGCAACTTCAAAAGCTGGGCTGAGGGGAGTGCTGGAAGGTATACATTACGAGGTTCAAGCAACCGATCCAACTGAGATGGGGATCGATGTGATCAAGGACAGAGCCAAATAGATAAAGAATCAGAAAAATAGCTAATCAATCTTTCTTTAGCCATCTTTTACTTTGTTTTTTTAATAATGAATGACCACTCCCAAATCACTGTATGTTATCTGCTTTTTTTTTTTCCCCCTTCTTTGTTTGTTCAACTTCTTTTTTTTTTTTTCCTTTTCTTCTTTTTGGGTTTTTAGATTTTGGGCACTAATGTAAGTAAAAAAAAAGAAAAATCTCTTCTAATGTTGAGGACAATTAAAGCCCCTTTTCTTGTATTGACTTTAATCTTGAAAAGGTGAGCTGATATTTTATGTAGTGTG

mRNA sequence

TAATTTTCATAGCTCGGACAAGTTCCCGACGAGACCTCACAAATTCACAATGGCGATGGCTTTCAAGATGGCAACCACTGGAATGTGGGTGAGCGATGAGTGCAAGAATTCGTTCATGGAAATGAAATGGAAGAAGGTGCATCGGTATATTGTGTTTAAGATCGATGAAGGATCGAGGTTAGTTACTGTGGACAAGGTTGGCGGTCCAGCCGAAAGCTACGATGATCTCACCGCGTCATTGCCGACCGACGACTGTCGATATGCGGTGTTCGATTTCGACTTCGTCACCGTTGATAATTGCCGGAAGAGCAAGATCTTCTTTATCGCCTGGTCGCCGACCGCATCAAGAATTAGAGCTAAAATTCTATACGCAACTTCAAAAGCTGGGCTGAGGGGAGTGCTGGAAGGTATACATTACGAGGTTCAAGCAACCGATCCAACTGAGATGGGGATCGATGTGATCAAGGACAGAGCCAAATAGATAAAGAATCAGAAAAATAGCTAATCAATCTTTCTTTAGCCATCTTTTACTTTGTTTTTTTAATAATGAATGACCACTCCCAAATCACTGTATGTTATCTGCTTTTTTTTTTTCCCCCTTCTTTGTTTGTTCAACTTCTTTTTTTTTTTTTCCTTTTCTTCTTTTTGGGTTTTTAGATTTTGGGCACTAATGTAAGTAAAAAAAAAGAAAAATCTCTTCTAATGTTGAGGACAATTAAAGCCCCTTTTCTTGTATTGACTTTAATCTTGAAAAGGTGAGCTGATATTTTATGTAGTGTG

Coding sequence (CDS)

ATGGCGATGGCTTTCAAGATGGCAACCACTGGAATGTGGGTGAGCGATGAGTGCAAGAATTCGTTCATGGAAATGAAATGGAAGAAGGTGCATCGGTATATTGTGTTTAAGATCGATGAAGGATCGAGGTTAGTTACTGTGGACAAGGTTGGCGGTCCAGCCGAAAGCTACGATGATCTCACCGCGTCATTGCCGACCGACGACTGTCGATATGCGGTGTTCGATTTCGACTTCGTCACCGTTGATAATTGCCGGAAGAGCAAGATCTTCTTTATCGCCTGGTCGCCGACCGCATCAAGAATTAGAGCTAAAATTCTATACGCAACTTCAAAAGCTGGGCTGAGGGGAGTGCTGGAAGGTATACATTACGAGGTTCAAGCAACCGATCCAACTGAGATGGGGATCGATGTGATCAAGGACAGAGCCAAATAG

Protein sequence

MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDLTASLPTDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKAGLRGVLEGIHYEVQATDPTEMGIDVIKDRAK

Homology

[Close]

BLAST of Tan0019867.1 vs. ExPASy Swiss-Prot
Match: Q9ZNT3 (Actin-depolymerizing factor 5 OS=Arabidopsis thaliana OX=3702 GN=ADF5 PE=1 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 1.1e-64
Identity = 121/143 (84.62%), Postives = 129/143 (90.21%), Query Frame = 0


Query: 1   MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL 60
           MAMAFKMATTGM V+DEC +SFM+MKWKKVHRYIVFKI+E SR VTVDKVGG  ESY DL
Sbjct: 1   MAMAFKMATTGMRVTDECTSSFMDMKWKKVHRYIVFKIEEKSRKVTVDKVGGAGESYHDL 60

Query: 61  TASLPTDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKAGLRGVLEG 120
             SLP DDCRYAVFDFDFVTVDNCRKSKIFFIAWSP AS+IRAKILYATSK GLR VLEG
Sbjct: 61  EDSLPVDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPEASKIRAKILYATSKDGLRRVLEG 120

Query: 121 IHYEVQATDPTEMGIDVIKDRAK 144
           IHYE+QATDPTEMG D+I+DRAK
Sbjct: 121 IHYELQATDPTEMGFDIIQDRAK 143

[Close]

BLAST of Tan0019867.1 vs. ExPASy Swiss-Prot
Match: Q10P87 (Actin-depolymerizing factor 5 OS=Oryza sativa subsp. japonica OX=39947 GN=ADF5 PE=2 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 5.4e-61
Identity = 112/143 (78.32%), Postives = 127/143 (88.81%), Query Frame = 0


Query: 1   MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL 60
           MAMA+KMAT GM V +EC+  FMEMKWKKVHR++V+KIDE SR V VDKVGGP E Y++L
Sbjct: 1   MAMAYKMATEGMNVKEECQRWFMEMKWKKVHRFVVYKIDERSRAVLVDKVGGPGEGYEEL 60

Query: 61  TASLPTDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKAGLRGVLEG 120
            A+LPTDDCRYAVFDFDFVTVDNC+KSKIFFIAWSPTASRIRAKILYATSK GLR VL+G
Sbjct: 61  VAALPTDDCRYAVFDFDFVTVDNCQKSKIFFIAWSPTASRIRAKILYATSKQGLRRVLDG 120

Query: 121 IHYEVQATDPTEMGIDVIKDRAK 144
           +HYEVQATD +EMG DVI+ RA+
Sbjct: 121 VHYEVQATDSSEMGYDVIRGRAQ 143

[Close]

BLAST of Tan0019867.1 vs. ExPASy Swiss-Prot
Match: O49606 (Actin-depolymerizing factor 9 OS=Arabidopsis thaliana OX=3702 GN=ADF9 PE=2 SV=2)

HSP 1 Score: 234.6 bits (597), Expect = 7.1e-61
Identity = 108/141 (76.60%), Postives = 124/141 (87.94%), Query Frame = 0


Query: 3   MAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDLTA 62
           MA K AT+GMW++D+CK SFMEMKWKKVHRY+V+K++E SR VTVDKVG   ESYDDL A
Sbjct: 1   MALKTATSGMWMTDDCKKSFMEMKWKKVHRYVVYKLEEKSRKVTVDKVGAAGESYDDLAA 60

Query: 63  SLPTDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKAGLRGVLEGIH 122
           SLP DDCRYAVFDFD+VTVDNCR SKIFFI WSP ASRIR K++YATSK+GLR VL+G+H
Sbjct: 61  SLPEDDCRYAVFDFDYVTVDNCRMSKIFFITWSPEASRIREKMMYATSKSGLRRVLDGVH 120

Query: 123 YEVQATDPTEMGIDVIKDRAK 144
           YE+QATDPTEMG D I+DRAK
Sbjct: 121 YELQATDPTEMGFDKIQDRAK 141

[Close]

BLAST of Tan0019867.1 vs. ExPASy Swiss-Prot
Match: Q8SAG3 (Actin-depolymerizing factor OS=Vitis vinifera OX=29760 PE=2 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 4.8e-49
Identity = 88/135 (65.19%), Postives = 115/135 (85.19%), Query Frame = 0


Query: 8   ATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDLTASLPTD 67
           A++GM V+D  KN+F+E+K KKVHRY++FKIDE  + V V+K GGPAES+D+  A+LP +
Sbjct: 8   ASSGMGVADHSKNTFLELKRKKVHRYVIFKIDEKKKEVVVEKTGGPAESFDEFAAALPEN 67

Query: 68  DCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKAGLRGVLEGIHYEVQA 127
           DCRYAV+DFDFVT +NC+KSKIFFIAWSP +SRIRAK+LYATSK   R  L+G+HYE+QA
Sbjct: 68  DCRYAVYDFDFVTSENCQKSKIFFIAWSPDSSRIRAKMLYATSKERFRRELDGVHYEIQA 127

Query: 128 TDPTEMGIDVIKDRA 143
           TDPTEM ++V+++RA
Sbjct: 128 TDPTEMDLEVLRERA 142

[Close]

BLAST of Tan0019867.1 vs. ExPASy Swiss-Prot
Match: Q9ZSK2 (Actin-depolymerizing factor 6 OS=Arabidopsis thaliana OX=3702 GN=ADF6 PE=1 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 3.8e-46
Identity = 85/135 (62.96%), Postives = 109/135 (80.74%), Query Frame = 0


Query: 8   ATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDLTASLPTD 67
           A +GM V+DE K +F+E++ KK HRY+VFKIDE  + V V+K G P ESYDD  ASLP +
Sbjct: 11  AISGMGVADESKTTFLELQRKKTHRYVVFKIDESKKEVVVEKTGNPTESYDDFLASLPDN 70

Query: 68  DCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKAGLRGVLEGIHYEVQA 127
           DCRYAV+DFDFVT +NC+KSKIFF AWSP+ S IRAK+LY+TSK  L   L+GIHYE+QA
Sbjct: 71  DCRYAVYDFDFVTSENCQKSKIFFFAWSPSTSGIRAKVLYSTSKDQLSRELQGIHYEIQA 130

Query: 128 TDPTEMGIDVIKDRA 143
           TDPTE+ ++V+++RA
Sbjct: 131 TDPTEVDLEVLRERA 145

[Close]

BLAST of Tan0019867.1 vs. NCBI nr
Match: XP_022146103.1 (actin-depolymerizing factor 5-like [Momordica charantia])

HSP 1 Score: 292.4 bits (747), Expect = 2.2e-75
Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL 60
           MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL
Sbjct: 1   MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL 60

Query: 61  TASLPTDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKAGLRGVLEG 120
           TASLPTDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKAGLRGVLEG
Sbjct: 61  TASLPTDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKAGLRGVLEG 120

Query: 121 IHYEVQATDPTEMGIDVIKDRAK 144
           IHYEVQATDPTEMG+DVIKDRAK
Sbjct: 121 IHYEVQATDPTEMGMDVIKDRAK 143

[Close]

BLAST of Tan0019867.1 vs. NCBI nr
Match: KAG6571025.1 (Actin-depolymerizing factor 5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 287.3 bits (734), Expect = 7.0e-74
Identity = 140/143 (97.90%), Postives = 141/143 (98.60%), Query Frame = 0


Query: 1   MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL 60
           MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL
Sbjct: 624 MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL 683

Query: 61  TASLPTDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKAGLRGVLEG 120
           TASLP DDCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKAGLR VLEG
Sbjct: 684 TASLPNDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKAGLRRVLEG 743

Query: 121 IHYEVQATDPTEMGIDVIKDRAK 144
           IHYEVQATDPTEMG+DVIKDRAK
Sbjct: 744 IHYEVQATDPTEMGMDVIKDRAK 766

[Close]

BLAST of Tan0019867.1 vs. NCBI nr
Match: XP_022943996.1 (actin-depolymerizing factor 5-like [Cucurbita moschata] >XP_022986745.1 actin-depolymerizing factor 5-like [Cucurbita maxima] >KAG7010856.1 Actin-depolymerizing factor 5, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 287.3 bits (734), Expect = 7.0e-74
Identity = 140/143 (97.90%), Postives = 141/143 (98.60%), Query Frame = 0


Query: 1   MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL 60
           MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL
Sbjct: 1   MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL 60

Query: 61  TASLPTDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKAGLRGVLEG 120
           TASLP DDCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKAGLR VLEG
Sbjct: 61  TASLPNDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKAGLRRVLEG 120

Query: 121 IHYEVQATDPTEMGIDVIKDRAK 144
           IHYEVQATDPTEMG+DVIKDRAK
Sbjct: 121 IHYEVQATDPTEMGMDVIKDRAK 143

[Close]

BLAST of Tan0019867.1 vs. NCBI nr
Match: XP_022947625.1 (actin-depolymerizing factor 5-like [Cucurbita moschata] >XP_022971127.1 actin-depolymerizing factor 5-like [Cucurbita maxima] >XP_023532678.1 actin-depolymerizing factor 5-like [Cucurbita pepo subsp. pepo] >KAG6604928.1 Actin-depolymerizing factor 5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 287.0 bits (733), Expect = 9.2e-74
Identity = 140/143 (97.90%), Postives = 141/143 (98.60%), Query Frame = 0


Query: 1   MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL 60
           MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGG AESYDDL
Sbjct: 1   MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGSAESYDDL 60

Query: 61  TASLPTDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKAGLRGVLEG 120
           TASLPTDDCRYAVFDFDFVT+DNCRKSKIFFIAWSPTASRIRAKILYATSKAGLR VLEG
Sbjct: 61  TASLPTDDCRYAVFDFDFVTIDNCRKSKIFFIAWSPTASRIRAKILYATSKAGLRRVLEG 120

Query: 121 IHYEVQATDPTEMGIDVIKDRAK 144
           IHYEVQATDPTEMGIDVIKDRAK
Sbjct: 121 IHYEVQATDPTEMGIDVIKDRAK 143

[Close]

BLAST of Tan0019867.1 vs. NCBI nr
Match: KAG7027007.1 (Actin-depolymerizing factor 5 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 284.6 bits (727), Expect = 4.6e-73
Identity = 139/143 (97.20%), Postives = 140/143 (97.90%), Query Frame = 0


Query: 1   MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL 60
           MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGG AESYDDL
Sbjct: 1   MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGSAESYDDL 60

Query: 61  TASLPTDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKAGLRGVLEG 120
            ASLPTDDCRYAVFDFDFVT+DNCRKSKIFFIAWSPTASRIRAKILYATSKAGLR VLEG
Sbjct: 61  IASLPTDDCRYAVFDFDFVTIDNCRKSKIFFIAWSPTASRIRAKILYATSKAGLRRVLEG 120

Query: 121 IHYEVQATDPTEMGIDVIKDRAK 144
           IHYEVQATDPTEMGIDVIKDRAK
Sbjct: 121 IHYEVQATDPTEMGIDVIKDRAK 143

[Close]

BLAST of Tan0019867.1 vs. ExPASy TrEMBL
Match: A0A6J1CXN9 (actin-depolymerizing factor 5-like OS=Momordica charantia OX=3673 GN=LOC111015397 PE=3 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.1e-75
Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 0


Query: 1   MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL 60
           MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL
Sbjct: 1   MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL 60

Query: 61  TASLPTDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKAGLRGVLEG 120
           TASLPTDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKAGLRGVLEG
Sbjct: 61  TASLPTDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKAGLRGVLEG 120

Query: 121 IHYEVQATDPTEMGIDVIKDRAK 144
           IHYEVQATDPTEMG+DVIKDRAK
Sbjct: 121 IHYEVQATDPTEMGMDVIKDRAK 143

[Close]

BLAST of Tan0019867.1 vs. ExPASy TrEMBL
Match: A0A6J1JEW6 (actin-depolymerizing factor 5-like OS=Cucurbita maxima OX=3661 GN=LOC111484412 PE=3 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 3.4e-74
Identity = 140/143 (97.90%), Postives = 141/143 (98.60%), Query Frame = 0


Query: 1   MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL 60
           MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL
Sbjct: 1   MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL 60

Query: 61  TASLPTDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKAGLRGVLEG 120
           TASLP DDCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKAGLR VLEG
Sbjct: 61  TASLPNDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKAGLRRVLEG 120

Query: 121 IHYEVQATDPTEMGIDVIKDRAK 144
           IHYEVQATDPTEMG+DVIKDRAK
Sbjct: 121 IHYEVQATDPTEMGMDVIKDRAK 143

[Close]

BLAST of Tan0019867.1 vs. ExPASy TrEMBL
Match: A0A6J1FT84 (actin-depolymerizing factor 5-like OS=Cucurbita moschata OX=3662 GN=LOC111448560 PE=3 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 3.4e-74
Identity = 140/143 (97.90%), Postives = 141/143 (98.60%), Query Frame = 0


Query: 1   MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL 60
           MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL
Sbjct: 1   MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL 60

Query: 61  TASLPTDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKAGLRGVLEG 120
           TASLP DDCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKAGLR VLEG
Sbjct: 61  TASLPNDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKAGLRRVLEG 120

Query: 121 IHYEVQATDPTEMGIDVIKDRAK 144
           IHYEVQATDPTEMG+DVIKDRAK
Sbjct: 121 IHYEVQATDPTEMGMDVIKDRAK 143

[Close]

BLAST of Tan0019867.1 vs. ExPASy TrEMBL
Match: A0A6J1I143 (actin-depolymerizing factor 5-like OS=Cucurbita maxima OX=3661 GN=LOC111469893 PE=3 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 4.5e-74
Identity = 140/143 (97.90%), Postives = 141/143 (98.60%), Query Frame = 0


Query: 1   MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL 60
           MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGG AESYDDL
Sbjct: 1   MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGSAESYDDL 60

Query: 61  TASLPTDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKAGLRGVLEG 120
           TASLPTDDCRYAVFDFDFVT+DNCRKSKIFFIAWSPTASRIRAKILYATSKAGLR VLEG
Sbjct: 61  TASLPTDDCRYAVFDFDFVTIDNCRKSKIFFIAWSPTASRIRAKILYATSKAGLRRVLEG 120

Query: 121 IHYEVQATDPTEMGIDVIKDRAK 144
           IHYEVQATDPTEMGIDVIKDRAK
Sbjct: 121 IHYEVQATDPTEMGIDVIKDRAK 143

[Close]

BLAST of Tan0019867.1 vs. ExPASy TrEMBL
Match: A0A6J1G7F5 (actin-depolymerizing factor 5-like OS=Cucurbita moschata OX=3662 GN=LOC111451431 PE=3 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 4.5e-74
Identity = 140/143 (97.90%), Postives = 141/143 (98.60%), Query Frame = 0


Query: 1   MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL 60
           MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGG AESYDDL
Sbjct: 1   MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGSAESYDDL 60

Query: 61  TASLPTDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKAGLRGVLEG 120
           TASLPTDDCRYAVFDFDFVT+DNCRKSKIFFIAWSPTASRIRAKILYATSKAGLR VLEG
Sbjct: 61  TASLPTDDCRYAVFDFDFVTIDNCRKSKIFFIAWSPTASRIRAKILYATSKAGLRRVLEG 120

Query: 121 IHYEVQATDPTEMGIDVIKDRAK 144
           IHYEVQATDPTEMGIDVIKDRAK
Sbjct: 121 IHYEVQATDPTEMGIDVIKDRAK 143

[Close]

BLAST of Tan0019867.1 vs. TAIR 10
Match: AT2G16700.1 (actin depolymerizing factor 5 )

HSP 1 Score: 247.3 bits (630), Expect = 7.5e-66
Identity = 121/143 (84.62%), Postives = 129/143 (90.21%), Query Frame = 0


Query: 1   MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL 60
           MAMAFKMATTGM V+DEC +SFM+MKWKKVHRYIVFKI+E SR VTVDKVGG  ESY DL
Sbjct: 1   MAMAFKMATTGMRVTDECTSSFMDMKWKKVHRYIVFKIEEKSRKVTVDKVGGAGESYHDL 60

Query: 61  TASLPTDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKAGLRGVLEG 120
             SLP DDCRYAVFDFDFVTVDNCRKSKIFFIAWSP AS+IRAKILYATSK GLR VLEG
Sbjct: 61  EDSLPVDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPEASKIRAKILYATSKDGLRRVLEG 120

Query: 121 IHYEVQATDPTEMGIDVIKDRAK 144
           IHYE+QATDPTEMG D+I+DRAK
Sbjct: 121 IHYELQATDPTEMGFDIIQDRAK 143

[Close]

BLAST of Tan0019867.1 vs. TAIR 10
Match: AT4G34970.1 (actin depolymerizing factor 9 )

HSP 1 Score: 234.6 bits (597), Expect = 5.0e-62
Identity = 108/141 (76.60%), Postives = 124/141 (87.94%), Query Frame = 0


Query: 3   MAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDLTA 62
           MA K AT+GMW++D+CK SFMEMKWKKVHRY+V+K++E SR VTVDKVG   ESYDDL A
Sbjct: 1   MALKTATSGMWMTDDCKKSFMEMKWKKVHRYVVYKLEEKSRKVTVDKVGAAGESYDDLAA 60

Query: 63  SLPTDDCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKAGLRGVLEGIH 122
           SLP DDCRYAVFDFD+VTVDNCR SKIFFI WSP ASRIR K++YATSK+GLR VL+G+H
Sbjct: 61  SLPEDDCRYAVFDFDYVTVDNCRMSKIFFITWSPEASRIREKMMYATSKSGLRRVLDGVH 120

Query: 123 YEVQATDPTEMGIDVIKDRAK 144
           YE+QATDPTEMG D I+DRAK
Sbjct: 121 YELQATDPTEMGFDKIQDRAK 141

[Close]

BLAST of Tan0019867.1 vs. TAIR 10
Match: AT2G16700.2 (actin depolymerizing factor 5 )

HSP 1 Score: 226.9 bits (577), Expect = 1.1e-59
Identity = 110/132 (83.33%), Postives = 118/132 (89.39%), Query Frame = 0


Query: 12  MWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDLTASLPTDDCRY 71
           M V+DEC +SFM+MKWKKVHRYIVFKI+E SR VTVDKVGG  ESY DL  SLP DDCRY
Sbjct: 1   MRVTDECTSSFMDMKWKKVHRYIVFKIEEKSRKVTVDKVGGAGESYHDLEDSLPVDDCRY 60

Query: 72  AVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKAGLRGVLEGIHYEVQATDPT 131
           AVFDFDFVTVDNCRKSKIFFIAWSP AS+IRAKILYATSK GLR VLEGIHYE+QATDPT
Sbjct: 61  AVFDFDFVTVDNCRKSKIFFIAWSPEASKIRAKILYATSKDGLRRVLEGIHYELQATDPT 120

Query: 132 EMGIDVIKDRAK 144
           EMG D+I+DRAK
Sbjct: 121 EMGFDIIQDRAK 132

[Close]

BLAST of Tan0019867.1 vs. TAIR 10
Match: AT2G31200.1 (actin depolymerizing factor 6 )

HSP 1 Score: 185.7 bits (470), Expect = 2.7e-47
Identity = 85/135 (62.96%), Postives = 109/135 (80.74%), Query Frame = 0


Query: 8   ATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDLTASLPTD 67
           A +GM V+DE K +F+E++ KK HRY+VFKIDE  + V V+K G P ESYDD  ASLP +
Sbjct: 11  AISGMGVADESKTTFLELQRKKTHRYVVFKIDESKKEVVVEKTGNPTESYDDFLASLPDN 70

Query: 68  DCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKAGLRGVLEGIHYEVQA 127
           DCRYAV+DFDFVT +NC+KSKIFF AWSP+ S IRAK+LY+TSK  L   L+GIHYE+QA
Sbjct: 71  DCRYAVYDFDFVTSENCQKSKIFFFAWSPSTSGIRAKVLYSTSKDQLSRELQGIHYEIQA 130

Query: 128 TDPTEMGIDVIKDRA 143
           TDPTE+ ++V+++RA
Sbjct: 131 TDPTEVDLEVLRERA 145

[Close]

BLAST of Tan0019867.1 vs. TAIR 10
Match: AT4G00680.1 (actin depolymerizing factor 8 )

HSP 1 Score: 177.2 bits (448), Expect = 9.6e-45
Identity = 79/134 (58.96%), Postives = 108/134 (80.60%), Query Frame = 0


Query: 8   ATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDLTASLPTD 67
           + +GM V+DECK  F+E+K K+ +R+IVFKIDE ++ V ++K+G P E+YDD T+S+P D
Sbjct: 4   SASGMHVNDECKIKFLELKAKRTYRFIVFKIDEKAQQVQIEKLGNPEETYDDFTSSIPDD 63

Query: 68  DCRYAVFDFDFVTVDNCRKSKIFFIAWSPTASRIRAKILYATSKAGLRGVLEGIHYEVQA 127
           +CRYAV+DFDF T DNC+KSKIFFIAWSP  SR+R+K+LYA+SK   +  +EGI  E+QA
Sbjct: 64  ECRYAVYDFDFTTEDNCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKREMEGIQVELQA 123

Query: 128 TDPTEMGIDVIKDR 142
           TDP+EM +D+IK R
Sbjct: 124 TDPSEMSLDIIKGR 137

The following BLAST results are available for this feature:

BLAST of Tan0019867.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZNT3	1.1e-64	84.62	Actin-depolymerizing factor 5 OS=Arabidopsis thaliana OX=3702 GN=ADF5 PE=1 SV=1	[more]
Q10P87	5.4e-61	78.32	Actin-depolymerizing factor 5 OS=Oryza sativa subsp. japonica OX=39947 GN=ADF5 P...	[more]
O49606	7.1e-61	76.60	Actin-depolymerizing factor 9 OS=Arabidopsis thaliana OX=3702 GN=ADF9 PE=2 SV=2	[more]
Q8SAG3	4.8e-49	65.19	Actin-depolymerizing factor OS=Vitis vinifera OX=29760 PE=2 SV=1	[more]
Q9ZSK2	3.8e-46	62.96	Actin-depolymerizing factor 6 OS=Arabidopsis thaliana OX=3702 GN=ADF6 PE=1 SV=1	[more]

BLAST of Tan0019867.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022146103.1	2.2e-75	99.30	actin-depolymerizing factor 5-like [Momordica charantia]	[more]
KAG6571025.1	7.0e-74	97.90	Actin-depolymerizing factor 5, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022943996.1	7.0e-74	97.90	actin-depolymerizing factor 5-like [Cucurbita moschata] >XP_022986745.1 actin-de...	[more]
XP_022947625.1	9.2e-74	97.90	actin-depolymerizing factor 5-like [Cucurbita moschata] >XP_022971127.1 actin-de...	[more]
KAG7027007.1	4.6e-73	97.20	Actin-depolymerizing factor 5 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Tan0019867.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CXN9	1.1e-75	99.30	actin-depolymerizing factor 5-like OS=Momordica charantia OX=3673 GN=LOC11101539...	[more]
A0A6J1JEW6	3.4e-74	97.90	actin-depolymerizing factor 5-like OS=Cucurbita maxima OX=3661 GN=LOC111484412 P...	[more]
A0A6J1FT84	3.4e-74	97.90	actin-depolymerizing factor 5-like OS=Cucurbita moschata OX=3662 GN=LOC111448560...	[more]
A0A6J1I143	4.5e-74	97.90	actin-depolymerizing factor 5-like OS=Cucurbita maxima OX=3661 GN=LOC111469893 P...	[more]
A0A6J1G7F5	4.5e-74	97.90	actin-depolymerizing factor 5-like OS=Cucurbita moschata OX=3662 GN=LOC111451431...	[more]

BLAST of Tan0019867.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G16700.1	7.5e-66	84.62	actin depolymerizing factor 5	[more]
AT4G34970.1	5.0e-62	76.60	actin depolymerizing factor 9	[more]
AT2G16700.2	1.1e-59	83.33	actin depolymerizing factor 5	[more]
AT2G31200.1	2.7e-47	62.96	actin depolymerizing factor 6	[more]
AT4G00680.1	9.6e-45	58.96	actin depolymerizing factor 8	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002108	Actin-depolymerising factor homology domain	SMART	SM00102	adf_2	coord: 16..143 e-value: 6.0E-47 score: 172.0
IPR002108	Actin-depolymerising factor homology domain	PFAM	PF00241	Cofilin_ADF	coord: 18..140 e-value: 4.7E-31 score: 107.1
IPR002108	Actin-depolymerising factor homology domain	PROSITE	PS51263	ADF_H	coord: 11..143 score: 34.974937
IPR029006	ADF-H/Gelsolin-like domain superfamily	GENE3D	3.40.20.10	Severin	coord: 8..143 e-value: 1.2E-43 score: 150.1
None	No IPR available	PANTHER	PTHR11913:SF98	ACTIN DEPOLYMERIZING FACTOR 5-RELATED	coord: 5..143
None	No IPR available	SUPERFAMILY	55753	Actin depolymerizing proteins	coord: 6..141
IPR017904	ADF/Cofilin	PANTHER	PTHR11913	COFILIN-RELATED	coord: 5..143
IPR017904	ADF/Cofilin	CDD	cd11286	ADF_cofilin_like	coord: 10..142 e-value: 4.87712E-58 score: 174.667

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Tan0019867	Tan0019867	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0019867.1-three_prime_utr	Tan0019867.1-three_prime_utr-LG05:10425896..10426194	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0019867.1-exon	Tan0019867.1-exon-LG05:10425896..10426345	exon
Tan0019867.1-exon	Tan0019867.1-exon-LG05:10426771..10427030	exon
Tan0019867.1-exon	Tan0019867.1-exon-LG05:10427130..10427199	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0019867.1-cds	Tan0019867.1-cds-LG05:10426195..10426345	CDS
Tan0019867.1-cds	Tan0019867.1-cds-LG05:10426771..10427030	CDS
Tan0019867.1-cds	Tan0019867.1-cds-LG05:10427130..10427150	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0019867.1-five_prime_utr	Tan0019867.1-five_prime_utr-LG05:10427151..10427199	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Tan0019867.1	Tan0019867.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030042	actin filament depolymerization
biological_process	GO:0051017	actin filament bundle assembly
cellular_component	GO:0015629	actin cytoskeleton
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0003779	actin binding
molecular_function	GO:0051015	actin filament binding