Tan0019537.1 (mRNA) Snake gourd v1

Overview


Name	Tan0019537.1
Type	mRNA
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG01: 7108048 .. 7109185 (+)
Sequence length	621
RNA-Seq Expression	Tan0019537.1
Synteny	Tan0019537.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAGGAGTTCTTCAACAAAAGACTTGCAAATCTGAACCTTCAAGAGGAGGAACAAGGAGGTTTAGTGGAAATTGACGATGACAAACTGGAAGAGTATGAAAAGAAAAATCAAGACGAGGTCGCCTGTAAAATCCTCACGATAAAGACCATAAATGCGAAAGTTTTTAAGAGTATTATACTTAAGATCTGGAATCTGGAAGGTAACATAAAGATTGAAGCAGTAGGGAGAAATACATTTGTTTGTTGTTTCAGAAATAAAAAAAGAGAAAAACAAATCATCAAGGGAGGATTGTGGAGCTTTGACAGGGGGCTAATGGTGTTTGAAGAACTCAAAGGAACCCTGAACTCTAATGGTGTTTGAAGAACTCAAAGGAACCCTGAACATCAAAGCACTAGATTTCAGGTACGCACCTTTCTGGGTTAATTTTCATGACTTACCTAGAGTGTGTTATACCAGAAAGAAAGCAGAGGCTCTAGGCAATGCCATTGGTAGATTTGAAGGTGTCGAATTAGATGAATTTGGAAGATGCAGTGGTCCAACGTTGAGAGTGTGGATCCGGCTGGACATTACTTGCCCCCTGCGAAGAGTAATCAAACTGAAAGTGGAATCGATGAGGGAAGAGGTATGGGTGCAAATCAACTATGAAAAACTCCATGATTTCTGTTTTGGGTGTGGTAAACTAGGTCATCTTCTTAGAGACTGTGATTCGGGTGAAGGAGAACTAAAAACTAACCTACAGTTTGGTGACTGGTTCAAAACAAGTATGCAAATGGGTGGTGAGGAGTCTTCAAGATCCGACAAAACGAAAAATAAAGATCAAGGGAGAGGAAGAGGAAGGGGAGGTCGCTTCCAACAGAGAAAGGAGAGTCGGGGGGACGCCCCGCCGGAGGAGACTGAGATAGTTACTACTCTGGGAGAGTCTAAGTGGGAAGACGATGATATGCTACTTAGTTTAAGCTTGAAGCAGGGGACAACAACTCTGCCAGAAGATATGACCGGAACTGAGGTCGACGGTACCCTGAAGGACACAACGAAAACTGGCCGAGACAGGGACAACTGGTTAAAGAAAAAAGACGGTGTGGCAGAGACAAATCATAACAGTGGGGCCCAGTTCATCGAGATTGGGGCTTAA

mRNA sequence

ATGGAAGAGGAGTTCTTCAACAAAAGACTTGCAAATCTGAACCTTCAAGAGGAGGAACAAGGAGGTTTAGTGGAAATTGACGATGACAAACTGGAAGAAAAGAAAGCAGAGGCTCTAGGCAATGCCATTGGTAGATTTGAAGGTGTCGAATTAGATGAATTTGGAAGATGCAGTGGTCCAACGTTGAGAGTGTGGATCCGGCTGGACATTACTTGCCCCCTGCGAAGATTTGGTGACTGGTTCAAAACAAGTATGCAAATGGGTGGTGAGGAGTCTTCAAGATCCGACAAAACGAAAAATAAAGATCAAGGGAGAGGAAGAGGAAGGGGAGGTCGCTTCCAACAGAGAAAGGAGAGTCGGGGGGACGCCCCGCCGGAGGAGACTGAGATAGTTACTACTCTGGGAGAGTCTAAGTGGGAAGACGATGATATGCTACTTAGTTTAAGCTTGAAGCAGGGGACAACAACTCTGCCAGAAGATATGACCGGAACTGAGGTCGACGGTACCCTGAAGGACACAACGAAAACTGGCCGAGACAGGGACAACTGGTTAAAGAAAAAAGACGGTGTGGCAGAGACAAATCATAACAGTGGGGCCCAGTTCATCGAGATTGGGGCTTAA

Coding sequence (CDS)

ATGGAAGAGGAGTTCTTCAACAAAAGACTTGCAAATCTGAACCTTCAAGAGGAGGAACAAGGAGGTTTAGTGGAAATTGACGATGACAAACTGGAAGAAAAGAAAGCAGAGGCTCTAGGCAATGCCATTGGTAGATTTGAAGGTGTCGAATTAGATGAATTTGGAAGATGCAGTGGTCCAACGTTGAGAGTGTGGATCCGGCTGGACATTACTTGCCCCCTGCGAAGATTTGGTGACTGGTTCAAAACAAGTATGCAAATGGGTGGTGAGGAGTCTTCAAGATCCGACAAAACGAAAAATAAAGATCAAGGGAGAGGAAGAGGAAGGGGAGGTCGCTTCCAACAGAGAAAGGAGAGTCGGGGGGACGCCCCGCCGGAGGAGACTGAGATAGTTACTACTCTGGGAGAGTCTAAGTGGGAAGACGATGATATGCTACTTAGTTTAAGCTTGAAGCAGGGGACAACAACTCTGCCAGAAGATATGACCGGAACTGAGGTCGACGGTACCCTGAAGGACACAACGAAAACTGGCCGAGACAGGGACAACTGGTTAAAGAAAAAAGACGGTGTGGCAGAGACAAATCATAACAGTGGGGCCCAGTTCATCGAGATTGGGGCTTAA

Protein sequence

MEEEFFNKRLANLNLQEEEQGGLVEIDDDKLEEKKAEALGNAIGRFEGVELDEFGRCSGPTLRVWIRLDITCPLRRFGDWFKTSMQMGGEESSRSDKTKNKDQGRGRGRGGRFQQRKESRGDAPPEETEIVTTLGESKWEDDDMLLSLSLKQGTTTLPEDMTGTEVDGTLKDTTKTGRDRDNWLKKKDGVAETNHNSGAQFIEIGA

Homology

The following BLAST results are available for this feature:

BLAST of Tan0019537.1 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0019537.1 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0019537.1 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0019537.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..125
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 155..174
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 155..170
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..129

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Tan0019537	Tan0019537	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0019537.1-exon	Tan0019537.1-exon-LG01:7108048..7108145	exon
Tan0019537.1-exon	Tan0019537.1-exon-LG01:7108510..7108639	exon
Tan0019537.1-exon	Tan0019537.1-exon-LG01:7108793..7109185	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0019537.1-cds	Tan0019537.1-cds-LG01:7108048..7108145	CDS
Tan0019537.1-cds	Tan0019537.1-cds-LG01:7108510..7108639	CDS
Tan0019537.1-cds	Tan0019537.1-cds-LG01:7108793..7109185	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Tan0019537.1	Tan0019537.1-protein	polypeptide