Tan0017877.1 (mRNA) Snake gourd v1

Overview


Name	Tan0017877.1
Type	mRNA
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG06: 2108405 .. 2109651 (+)
Sequence length	694
RNA-Seq Expression	Tan0017877.1
Synteny	Tan0017877.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCAAAAGAGCCCGTGATTTTGCAAAAGAAAAAAAAAAGTCACGAATAATCTGGTTCAAGTTTGGCTATAAATTTGGTTATAATGAGTAGGCAGTGAATTCAAAGCTGTAAAGTGAATTTGTGTAGCAATATTAATGGGCTGCTGCAGAGTTTCTAGCTTCTCAAATTTTGCTTATGGCTAAGGCTAATGTTTGTTGCTCCATTGAAATGGAGCCCAAGACTTTGAACCACGGCCAACTCCACCAAGCCAGGGTAAGCCATAAACCCACCCTTTTTTGGCTCTTGGGTTTTGATTTTGAAGCTTTTTTCTTTTAATGGACACTCTGGTAATTTTGATTGTTCTTATAATTTTTTGGTTCTGCAGGAAGTGGCTGCTGATGTTGTTCAAAAACTGGAACCTAGTGAAGCCTCTCTTGTATTGATTGATGTACGTTGTTACTAAAGTTTTAAGGGCAAGTTTAGGAATACAATCATCAAAAACGTGTTTTTAATGATTCAAAATCAACTTAATATTTGATTTTACAAACATGATCATCATACTATAAAAATTGATTTTGAATGATTATAATCATAATTTGGAGTGATTTTGATAAGGCATGAGTGATTTTAACAATTTCAAGATCACTCCAAACACGTCGTAAATCACTTTAGCTAAATTATTAGGTGATTTTTTGCTCATTGCTCAAATGATTTTTAATATGCATTTTAAAACTATTGATCTTAAGAAAATAATCGTGTTTCTAAGAGAGTCGTGATTTTTAGTATGATCCTAAGTTTTATTTGAGGTCAGTTTAACTATTTTGTTTAAATTTTTTGTGATTTTCTTCTAATGGGATACTTTTCATTTCTAATTGATGTGAGAATTTAGATTGTAGAACGATTGAAACCGATGAACCAAATGATTGAAAGCGGAGGACAGCAGTCGCCGGCGTCGGAAGATTATAAGGAAGGAATAGGAAGATGTCAATGCTCTTACATTTCTACTGATCAATCCCCAAATCAACTGCAGCTGCTTAGAGAACCTCTTTCAGCTCCATTTTGAAGCTTCAATTTTTATTTGATCTCAAGTGCTTTGTAGAGATAAAGACTGTTCTTTTTAAAAAAAAAAAACAATAAAGACTGTTCTTTTAGGTTGGATGATTTTGTTTTTGAAGAGTTTGGACTGTCACTTGTGTGAATTGTAATGAATAATTATTGGTTGATTAAACTGCCATTGATAATATAAATAAAAGCATGACCTTGCTCAA

mRNA sequence

GTCAAAAGAGCCCGTGATTTTGCAAAAGAAAAAAAAAAGTCACGAATAATCTGGTTCAAGTTTGGCTATAAATTTGGTTATAATGAGTAGGCAGTGAATTCAAAGCTGTAAAGTGAATTTGTGTAGCAATATTAATGGGCTGCTGCAGAGTTTCTAGCTTCTCAAATTTTGCTTATGGCTAAGGCTAATGTTTGTTGCTCCATTGAAATGGAGCCCAAGACTTTGAACCACGGCCAACTCCACCAAGCCAGGGAAGTGGCTGCTGATGTTGTTCAAAAACTGGAACCTAGTGAAGCCTCTCTTGTATTGATTGATATTGTAGAACGATTGAAACCGATGAACCAAATGATTGAAAGCGGAGGACAGCAGTCGCCGGCGTCGGAAGATTATAAGGAAGGAATAGGAAGATGTCAATGCTCTTACATTTCTACTGATCAATCCCCAAATCAACTGCAGCTGCTTAGAGAACCTCTTTCAGCTCCATTTTGAAGCTTCAATTTTTATTTGATCTCAAGTGCTTTGTAGAGATAAAGACTGTTCTTTTTAAAAAAAAAAAACAATAAAGACTGTTCTTTTAGGTTGGATGATTTTGTTTTTGAAGAGTTTGGACTGTCACTTGTGTGAATTGTAATGAATAATTATTGGTTGATTAAACTGCCATTGATAATATAAATAAAAGCATGACCTTGCTCAA

Coding sequence (CDS)

ATGGCTAAGGCTAATGTTTGTTGCTCCATTGAAATGGAGCCCAAGACTTTGAACCACGGCCAACTCCACCAAGCCAGGGAAGTGGCTGCTGATGTTGTTCAAAAACTGGAACCTAGTGAAGCCTCTCTTGTATTGATTGATATTGTAGAACGATTGAAACCGATGAACCAAATGATTGAAAGCGGAGGACAGCAGTCGCCGGCGTCGGAAGATTATAAGGAAGGAATAGGAAGATGTCAATGCTCTTACATTTCTACTGATCAATCCCCAAATCAACTGCAGCTGCTTAGAGAACCTCTTTCAGCTCCATTTTGA

Protein sequence

MAKANVCCSIEMEPKTLNHGQLHQAREVAADVVQKLEPSEASLVLIDIVERLKPMNQMIESGGQQSPASEDYKEGIGRCQCSYISTDQSPNQLQLLREPLSAPF

Homology

[Close]

BLAST of Tan0017877.1 vs. NCBI nr
Match: XP_008462443.1 (PREDICTED: uncharacterized protein LOC103500790 [Cucumis melo])

HSP 1 Score: 156.4 bits (394), Expect = 1.4e-34
Identity = 83/112 (74.11%), Postives = 89/112 (79.46%), Query Frame = 0


Query: 1   MAKANVCCSIEMEPKTLNHGQLHQAREVAADVVQKLEPSEASLVLIDIVERLKPMNQMIE 60
           MAK NVCCSIE+EPKTLN GQLHQAREVAADVVQKLEPSEASLVLID+VERLKPM  M E
Sbjct: 1   MAKPNVCCSIELEPKTLNQGQLHQAREVAADVVQKLEPSEASLVLIDMVERLKPMKYMFE 60

Query: 61  SGGQQSPASEDYKEGIG-------RCQCSYISTDQSPNQ-LQLLREPLSAPF 105
            GG     SE   E +G       RCQCSY+STDQSPN+ LQLL+EPLSAPF
Sbjct: 61  RGGVGGGESESESESLGEFEEERKRCQCSYVSTDQSPNKVLQLLKEPLSAPF 112

[Close]

BLAST of Tan0017877.1 vs. NCBI nr
Match: XP_038898732.1 (uncharacterized protein LOC120086256 [Benincasa hispida])

HSP 1 Score: 150.2 bits (378), Expect = 9.8e-33
Identity = 80/113 (70.80%), Postives = 87/113 (76.99%), Query Frame = 0


Query: 1   MAKANVCCSIEMEPKTLNHGQLHQAREVAADVVQKLEPSEASLVLIDIVERLKPMNQMIE 60
           MAK NVCCSIE+EPKTLN GQLHQAREVAADVVQKLEPSEASLVLIDIVER K MN M+E
Sbjct: 1   MAKPNVCCSIELEPKTLNQGQLHQAREVAADVVQKLEPSEASLVLIDIVERFKTMNYMLE 60

Query: 61  SGGQQSPASE---------DYKEGIGRCQCSYISTDQSPNQLQLLREPLSAPF 105
             G   P+           D KE  GRCQC Y+ST +SPNQLQL++EPLSAPF
Sbjct: 61  GEGDSQPSLPPPPSLPSLGDIKEERGRCQCFYVST-ESPNQLQLVKEPLSAPF 112

[Close]

BLAST of Tan0017877.1 vs. NCBI nr
Match: XP_022992446.1 (uncharacterized protein LOC111488747 [Cucurbita maxima])

HSP 1 Score: 147.9 bits (372), Expect = 4.8e-32
Identity = 83/123 (67.48%), Postives = 90/123 (73.17%), Query Frame = 0


Query: 1   MAKANVCCSIEMEPKTLNHGQLHQAREVAADVVQKLEPSEASLVLIDIVERLKPMNQMIE 60
           MAK N  CSIEMEP+TLN GQLHQAREVAADVVQKLEP+EASL+LIDIVERLKPMN +IE
Sbjct: 1   MAKPNARCSIEMEPRTLNQGQLHQAREVAADVVQKLEPTEASLLLIDIVERLKPMNHIIE 60

Query: 61  SGGQ-------QSPASE------------DYKEGIGRCQCSYISTDQSPNQLQLLREPLS 105
            GG+        SP S             DYKE  GRCQCSYI   +SPNQLQLL+EPLS
Sbjct: 61  GGGELPLLPPLSSPLSSATGPPPPPPLVGDYKEERGRCQCSYICI-ESPNQLQLLKEPLS 120

[Close]

BLAST of Tan0017877.1 vs. NCBI nr
Match: XP_023521779.1 (uncharacterized protein LOC111785636 [Cucurbita pepo subsp. pepo] >XP_023549181.1 uncharacterized protein LOC111807614 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 147.1 bits (370), Expect = 8.3e-32
Identity = 84/121 (69.42%), Postives = 89/121 (73.55%), Query Frame = 0


Query: 1   MAKANVCCSIEMEPKTLNHGQLHQAREVAADVVQKLEPSEASLVLIDIVERLKPMNQMIE 60
           MAK N  CSIEMEP+TLN GQLHQAREVAADVVQKLEP+EASL+LIDIVERLKPMN MIE
Sbjct: 1   MAKPNARCSIEMEPRTLNQGQLHQAREVAADVVQKLEPTEASLLLIDIVERLKPMNHMIE 60

Query: 61  SG------GQQSPASE-----------DYKEGIGRCQCSYISTDQSPNQLQLLREPLSAP 105
            G         SP S            DYKE  GRCQCSYIS  +SPNQLQLL+EPLSAP
Sbjct: 61  RGELPLLPPLSSPLSSAAGPPAPPFVGDYKEERGRCQCSYISI-ESPNQLQLLKEPLSAP 120

[Close]

BLAST of Tan0017877.1 vs. NCBI nr
Match: XP_022152180.1 (uncharacterized protein LOC111019960 [Momordica charantia])

HSP 1 Score: 144.8 bits (364), Expect = 4.1e-31
Identity = 74/104 (71.15%), Postives = 85/104 (81.73%), Query Frame = 0


Query: 1   MAKANVCCSIEMEPKTLNHGQLHQAREVAADVVQKLEPSEASLVLIDIVERLKPMNQMIE 60
           MAKA +CCSIE+EPKTLNHGQL++AREVAADVVQKLEP EAS V ID+VER K +NQ IE
Sbjct: 1   MAKAKICCSIELEPKTLNHGQLYRAREVAADVVQKLEPEEASAVXIDVVERFKTVNQTIE 60

Query: 61  SGGQQSPASEDYKEGIGRCQCSYISTDQSPNQLQLLREPLSAPF 105
           SG    P  +DY EG  RCQCS + T +SPNQ+QLL+EPLSAPF
Sbjct: 61  SGEPSRPL-QDYVEGRERCQCSCLPT-ESPNQMQLLKEPLSAPF 102

[Close]

BLAST of Tan0017877.1 vs. ExPASy TrEMBL
Match: A0A1S3CH00 (uncharacterized protein LOC103500790 OS=Cucumis melo OX=3656 GN=LOC103500790 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 6.6e-35
Identity = 83/112 (74.11%), Postives = 89/112 (79.46%), Query Frame = 0


Query: 1   MAKANVCCSIEMEPKTLNHGQLHQAREVAADVVQKLEPSEASLVLIDIVERLKPMNQMIE 60
           MAK NVCCSIE+EPKTLN GQLHQAREVAADVVQKLEPSEASLVLID+VERLKPM  M E
Sbjct: 1   MAKPNVCCSIELEPKTLNQGQLHQAREVAADVVQKLEPSEASLVLIDMVERLKPMKYMFE 60

Query: 61  SGGQQSPASEDYKEGIG-------RCQCSYISTDQSPNQ-LQLLREPLSAPF 105
            GG     SE   E +G       RCQCSY+STDQSPN+ LQLL+EPLSAPF
Sbjct: 61  RGGVGGGESESESESLGEFEEERKRCQCSYVSTDQSPNKVLQLLKEPLSAPF 112

[Close]

BLAST of Tan0017877.1 vs. ExPASy TrEMBL
Match: A0A6J1JTK7 (uncharacterized protein LOC111488747 OS=Cucurbita maxima OX=3661 GN=LOC111488747 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 2.3e-32
Identity = 83/123 (67.48%), Postives = 90/123 (73.17%), Query Frame = 0


Query: 1   MAKANVCCSIEMEPKTLNHGQLHQAREVAADVVQKLEPSEASLVLIDIVERLKPMNQMIE 60
           MAK N  CSIEMEP+TLN GQLHQAREVAADVVQKLEP+EASL+LIDIVERLKPMN +IE
Sbjct: 1   MAKPNARCSIEMEPRTLNQGQLHQAREVAADVVQKLEPTEASLLLIDIVERLKPMNHIIE 60

Query: 61  SGGQ-------QSPASE------------DYKEGIGRCQCSYISTDQSPNQLQLLREPLS 105
            GG+        SP S             DYKE  GRCQCSYI   +SPNQLQLL+EPLS
Sbjct: 61  GGGELPLLPPLSSPLSSATGPPPPPPLVGDYKEERGRCQCSYICI-ESPNQLQLLKEPLS 120

[Close]

BLAST of Tan0017877.1 vs. ExPASy TrEMBL
Match: A0A0A0K9S8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G452980 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.2e-31
Identity = 74/105 (70.48%), Postives = 87/105 (82.86%), Query Frame = 0


Query: 1   MAKANVCCSIEMEPKTLNHGQLHQAREVAADVVQKLEPSEASLVLIDIVERLKPMNQMIE 60
           MAK NVCCSIE+EPKTLN GQLH+AREVAADVVQKLE SEA+LVLID+VERL+PM  M  
Sbjct: 1   MAKPNVCCSIELEPKTLNQGQLHKAREVAADVVQKLEHSEATLVLIDMVERLRPMKCMFG 60

Query: 61  SGGQQSPASEDYKEGIGRCQCSYISTDQSPNQ-LQLLREPLSAPF 105
            GG    +  +++E   RCQCSY+STDQSPN+ L+LL+EPLSAPF
Sbjct: 61  GGGGGGGSLREFEEERKRCQCSYVSTDQSPNKVLELLKEPLSAPF 105

[Close]

BLAST of Tan0017877.1 vs. ExPASy TrEMBL
Match: A0A6J1DD75 (uncharacterized protein LOC111019960 OS=Momordica charantia OX=3673 GN=LOC111019960 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.0e-31
Identity = 74/104 (71.15%), Postives = 85/104 (81.73%), Query Frame = 0


Query: 1   MAKANVCCSIEMEPKTLNHGQLHQAREVAADVVQKLEPSEASLVLIDIVERLKPMNQMIE 60
           MAKA +CCSIE+EPKTLNHGQL++AREVAADVVQKLEP EAS V ID+VER K +NQ IE
Sbjct: 1   MAKAKICCSIELEPKTLNHGQLYRAREVAADVVQKLEPEEASAVXIDVVERFKTVNQTIE 60

Query: 61  SGGQQSPASEDYKEGIGRCQCSYISTDQSPNQLQLLREPLSAPF 105
           SG    P  +DY EG  RCQCS + T +SPNQ+QLL+EPLSAPF
Sbjct: 61  SGEPSRPL-QDYVEGRERCQCSCLPT-ESPNQMQLLKEPLSAPF 102

[Close]

BLAST of Tan0017877.1 vs. ExPASy TrEMBL
Match: A0A6J1GPS6 (uncharacterized protein LOC111456424 OS=Cucurbita moschata OX=3662 GN=LOC111456424 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 8.3e-30
Identity = 80/122 (65.57%), Postives = 86/122 (70.49%), Query Frame = 0


Query: 1   MAKANVCCSIEMEPKTLNHGQLHQAREVAADVVQKLEPSEASLVLIDIVERLKPMNQMIE 60
           MAK N  CSIEMEP+TL  GQLHQAREVAADVVQKLEP+EASL+LIDIVERLKPMN +IE
Sbjct: 1   MAKPNARCSIEMEPRTLKQGQLHQAREVAADVVQKLEPTEASLLLIDIVERLKPMNHIIE 60

Query: 61  SG------GQQSPASE------------DYKEGIGRCQCSYISTDQSPNQLQLLREPLSA 105
            G         SP S             DY E  GRCQCSYI   +SPNQLQLL+EPLSA
Sbjct: 61  RGELPLLPPLSSPLSSAAAGPPPPPFVGDYNEESGRCQCSYICI-ESPNQLQLLKEPLSA 120

The following BLAST results are available for this feature:

BLAST of Tan0017877.1 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0017877.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008462443.1	1.4e-34	74.11	PREDICTED: uncharacterized protein LOC103500790 [Cucumis melo]	[more]
XP_038898732.1	9.8e-33	70.80	uncharacterized protein LOC120086256 [Benincasa hispida]	[more]
XP_022992446.1	4.8e-32	67.48	uncharacterized protein LOC111488747 [Cucurbita maxima]	[more]
XP_023521779.1	8.3e-32	69.42	uncharacterized protein LOC111785636 [Cucurbita pepo subsp. pepo] >XP_023549181....	[more]
XP_022152180.1	4.1e-31	71.15	uncharacterized protein LOC111019960 [Momordica charantia]	[more]

BLAST of Tan0017877.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CH00	6.6e-35	74.11	uncharacterized protein LOC103500790 OS=Cucumis melo OX=3656 GN=LOC103500790 PE=...	[more]
A0A6J1JTK7	2.3e-32	67.48	uncharacterized protein LOC111488747 OS=Cucurbita maxima OX=3661 GN=LOC111488747...	[more]
A0A0A0K9S8	1.2e-31	70.48	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G452980 PE=4 SV=1	[more]
A0A6J1DD75	2.0e-31	71.15	uncharacterized protein LOC111019960 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A6J1GPS6	8.3e-30	65.57	uncharacterized protein LOC111456424 OS=Cucurbita moschata OX=3662 GN=LOC1114564...	[more]

BLAST of Tan0017877.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34808	EXPRESSED PROTEIN	coord: 4..104
None	No IPR available	PANTHER	PTHR34808:SF5	SUBFAMILY NOT NAMED	coord: 4..104

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Tan0017877	Tan0017877	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0017877.1-five_prime_utr	Tan0017877.1-five_prime_utr-LG06:2108405..2108578	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0017877.1-exon	Tan0017877.1-exon-LG06:2108405..2108656	exon
Tan0017877.1-exon	Tan0017877.1-exon-LG06:2108769..2108831	exon
Tan0017877.1-exon	Tan0017877.1-exon-LG06:2109273..2109651	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0017877.1-cds	Tan0017877.1-cds-LG06:2108579..2108656	CDS
Tan0017877.1-cds	Tan0017877.1-cds-LG06:2108769..2108831	CDS
Tan0017877.1-cds	Tan0017877.1-cds-LG06:2109273..2109446	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0017877.1-three_prime_utr	Tan0017877.1-three_prime_utr-LG06:2109447..2109651	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Tan0017877.1	Tan0017877.1-protein	polypeptide