Tan0017475.1 (mRNA) Snake gourd v1

Overview


Name	Tan0017475.1
Type	mRNA
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Ferredoxin
Location	LG01: 7481209 .. 7483348 (+)
Sequence length	2140
RNA-Seq Expression	Tan0017475.1
Synteny	Tan0017475.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATAAGTTTTTAAAAATTATTATTTTAATTTTCAATACTTAGCTTAATTTTTTAAAACGTACTTAACAAGCCCATAACAAAACAAAAACCTATGGGTAAAAGTAGTATTTATAGGTTTAATTTTAAAAAACCAAATAGTTATCAAGGTCTAAATTTTTCAAATTTTTACTTAATTTTTTTAAGTGTTTTTAAAAAGTGGGTGATAAAGGAAGACAACTATAAGTGTAAATATGTTTATAAACTCAATTTTCAAAAACAGAAAACAAAAAGCAAAATAGTTATTAAACATAAGGTAAGTATTTGTAAGTTGGATTTTGACATATTTTGTTCTTTTGTCTATCAATTCATTTAGGTTCATTTTCATTTTTGTTTAGCATATAAGATTGAAATTAAAGCAAATGATTATTTTTAGCTTAATGAAGTTGTTGTATATTCATGTGTTAGTACTCCTAGCTATGGATTTCTCAGGTTAATCACAACATTTTTCAGAAAACAAATTTTGAGATGACAAAATTTCTTATTAGCAAGATTTTTGTGTTTCCATGTTGGGTTTTTTGGCAGCAATATATGGTCCTTGTTATTTTGATTGAATATTCTTTAAGGGTTGACTTAGATTGTCAATGACAAAAATGGAAAGTTTCTTGATGTGGCATTGGAGAACTAGTAAAGTGAGGTGAAATAACATTAGGGAAGAGGATTGAAATATCCCAAAAGTTAGTAAATTCAAGTCAAAGTTTTCTCCACTTAGCACTTTAAGTACTATTTTTTCTCTCAATAATACCATTTTTCTCGAGTAAATCTTGATAAGTAGATTGATATGCCTTATTTTTTAAGAAATAACACAAGTATTCATTGAAATATTTAATTCTGCTGTTAAAGTTTAAAATATTTAATTAAGTTCAAAATGGTGTTTCAATCATATTGTAAAAAAATTTCATGTCAATATATTTTTTTTCCATAAATAAACTAGAAAAATGTGCATAATCATCCATGGGAGCGACACGCCATCCATTTTCACTTAGTCATAAATAAAAGTGACAAATTTCATTTTAGTGTCAAGGTAGCTAAATATAAAATTTAGTTTTTAAGAGAAAAATTCAATACTCACAATCAAATGAGTTTCCAACAAATTTTCTGATGCGATTTGAAAGTATCAGCCGGATTCACTTATCTATTAAATTTAATAATTAAAAAAAGCAATAAAATCACCCCCATATCGAAAAGTGAGTGGTGGATTTTTGCAAGTTCCATGAAGTGTCATCACCAATTATTTGTTATACTTGCCAATCAATTGATGGTTTTCAAAGCCAGAGCTGTCATTGGCCATTGAAAGATAAGGTTAGCCATAGCAATAGCCACATGCTCTGGCTTCACTCTCCACATTAAAACCACACACACAGGCAGAGCCAGCCATCATCTTCCACAAACCCACCTCTCACTTTCACCATTCCAAGCCCCAAAATGGCTAGCACCACCACCACTGCACTTTCCAGCCCCATCACCACCAGTTCCTTCCTCCGGCGCCCGACGCTGAGGCCGGTGTCAAACGTGGGCGAGCGTCTGTTCGGGCTGCAGAAGGGTAGCAGCCGGGGCGGGCGAGTGACAGCAATGGCGACGTACAAAGTGAAGCTAATAACATCAGGTGGAGAGAAAGTGATCAACTGTCCAGATAGTGATTACATTCTAGATGCAGCTGAAGAAGCAGGGATGGACATTCCATACTCATGTAGAGCAGGAGCATGTTCTACTTGTGTAGCAAAACTAAAATCAGGGAAGGTGGATCAGTCAGATGTTAGCTACCTTGATGAGAAGCAGATAGCAAATGGCTGGGTTCTTACTTGTATGGCTTCTCCCCTCTCTGATATTGTCATTGAGACCCACAAGGAGGAGGAGTTTTCAGGTTAAGGACAGAGAGATTTAGTGTTTTCACTTTTTTTTTCCTCATCATCTAAGATATGAAAATAAGCAAATGGATGCTGTTTTTAGCTTAATTATGATTCAAGTGGATCATTAAAGGCAAGTGTTTGTATGTTGGATTTCAACTTATCTTGTTCTTGTTCATCAGTCATTTGGGTCATTTTTAGCATCTAGGAAGTGAAAGTAAGCCAAAGCCAATAATACTATTGAAGTGGATTACTTA

mRNA sequence

AATAAGTTTTTAAAAATTATTATTTTAATTTTCAATACTTAGCTTAATTTTTTAAAACGTACTTAACAAGCCCATAACAAAACAAAAACCTATGGGTAAAAGTAGTATTTATAGGTTTAATTTTAAAAAACCAAATAGTTATCAAGGTCTAAATTTTTCAAATTTTTACTTAATTTTTTTAAGTGTTTTTAAAAAGTGGGTGATAAAGGAAGACAACTATAAGTGTAAATATGTTTATAAACTCAATTTTCAAAAACAGAAAACAAAAAGCAAAATAGTTATTAAACATAAGGTAAGTATTTGTAAGTTGGATTTTGACATATTTTGTTCTTTTGTCTATCAATTCATTTAGGTTCATTTTCATTTTTGTTTAGCATATAAGATTGAAATTAAAGCAAATGATTATTTTTAGCTTAATGAAGTTGTTGTATATTCATGTGTTAGTACTCCTAGCTATGGATTTCTCAGGTTAATCACAACATTTTTCAGAAAACAAATTTTGAGATGACAAAATTTCTTATTAGCAAGATTTTTGTGTTTCCATGTTGGGTTTTTTGGCAGCAATATATGGTCCTTGTTATTTTGATTGAATATTCTTTAAGGGTTGACTTAGATTGTCAATGACAAAAATGGAAAGTTTCTTGATGTGGCATTGGAGAACTAGTAAAGTGAGGTGAAATAACATTAGGGAAGAGGATTGAAATATCCCAAAAGTTAGTAAATTCAAGTCAAAGTTTTCTCCACTTAGCACTTTAAGTACTATTTTTTCTCTCAATAATACCATTTTTCTCGAGTAAATCTTGATAAGTAGATTGATATGCCTTATTTTTTAAGAAATAACACAAGTATTCATTGAAATATTTAATTCTGCTGTTAAAGTTTAAAATATTTAATTAAGTTCAAAATGGTGTTTCAATCATATTGTAAAAAAATTTCATGTCAATATATTTTTTTTCCATAAATAAACTAGAAAAATGTGCATAATCATCCATGGGAGCGACACGCCATCCATTTTCACTTAGTCATAAATAAAAGTGACAAATTTCATTTTAGTGTCAAGGTAGCTAAATATAAAATTTAGTTTTTAAGAGAAAAATTCAATACTCACAATCAAATGAGTTTCCAACAAATTTTCTGATGCGATTTGAAAGTATCAGCCGGATTCACTTATCTATTAAATTTAATAATTAAAAAAAGCAATAAAATCACCCCCATATCGAAAAGTGAGTGGTGGATTTTTGCAAGTTCCATGAAGTGTCATCACCAATTATTTGTTATACTTGCCAATCAATTGATGGTTTTCAAAGCCAGAGCTGTCATTGGCCATTGAAAGATAAGGTTAGCCATAGCAATAGCCACATGCTCTGGCTTCACTCTCCACATTAAAACCACACACACAGGCAGAGCCAGCCATCATCTTCCACAAACCCACCTCTCACTTTCACCATTCCAAGCCCCAAAATGGCTAGCACCACCACCACTGCACTTTCCAGCCCCATCACCACCAGTTCCTTCCTCCGGCGCCCGACGCTGAGGCCGGTGTCAAACGTGGGCGAGCGTCTGTTCGGGCTGCAGAAGGGTAGCAGCCGGGGCGGGCGAGTGACAGCAATGGCGACGTACAAAGTGAAGCTAATAACATCAGGTGGAGAGAAAGTGATCAACTGTCCAGATAGTGATTACATTCTAGATGCAGCTGAAGAAGCAGGGATGGACATTCCATACTCATGTAGAGCAGGAGCATGTTCTACTTGTGTAGCAAAACTAAAATCAGGGAAGGTGGATCAGTCAGATGTTAGCTACCTTGATGAGAAGCAGATAGCAAATGGCTGGGTTCTTACTTGTATGGCTTCTCCCCTCTCTGATATTGTCATTGAGACCCACAAGGAGGAGGAGTTTTCAGGTTAAGGACAGAGAGATTTAGTGTTTTCACTTTTTTTTTCCTCATCATCTAAGATATGAAAATAAGCAAATGGATGCTGTTTTTAGCTTAATTATGATTCAAGTGGATCATTAAAGGCAAGTGTTTGTATGTTGGATTTCAACTTATCTTGTTCTTGTTCATCAGTCATTTGGGTCATTTTTAGCATCTAGGAAGTGAAAGTAAGCCAAAGCCAATAATACTATTGAAGTGGATTACTTA

Coding sequence (CDS)

ATGGCTAGCACCACCACCACTGCACTTTCCAGCCCCATCACCACCAGTTCCTTCCTCCGGCGCCCGACGCTGAGGCCGGTGTCAAACGTGGGCGAGCGTCTGTTCGGGCTGCAGAAGGGTAGCAGCCGGGGCGGGCGAGTGACAGCAATGGCGACGTACAAAGTGAAGCTAATAACATCAGGTGGAGAGAAAGTGATCAACTGTCCAGATAGTGATTACATTCTAGATGCAGCTGAAGAAGCAGGGATGGACATTCCATACTCATGTAGAGCAGGAGCATGTTCTACTTGTGTAGCAAAACTAAAATCAGGGAAGGTGGATCAGTCAGATGTTAGCTACCTTGATGAGAAGCAGATAGCAAATGGCTGGGTTCTTACTTGTATGGCTTCTCCCCTCTCTGATATTGTCATTGAGACCCACAAGGAGGAGGAGTTTTCAGGTTAA

Protein sequence

MASTTTTALSSPITTSSFLRRPTLRPVSNVGERLFGLQKGSSRGGRVTAMATYKVKLITSGGEKVINCPDSDYILDAAEEAGMDIPYSCRAGACSTCVAKLKSGKVDQSDVSYLDEKQIANGWVLTCMASPLSDIVIETHKEEEFSG

Homology

[Close]

BLAST of Tan0017475.1 vs. ExPASy Swiss-Prot
Match: O04090 (Ferredoxin-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD1 PE=1 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.7e-41
Identity = 86/144 (59.72%), Postives = 113/144 (78.47%), Query Frame = 0


Query: 6   TTALSSPITTSSFLRRP----TLR--PVSNVGERLFGLQKGSSRGGRVTAMATYKVKLIT 65
           +TALSS I ++SFLRR     +LR  P +N  + LFGL+  ++RGGRVTAMATYKVK IT
Sbjct: 3   STALSSAIVSTSFLRRQQTPISLRSLPFANT-QSLFGLKSSTARGGRVTAMATYKVKFIT 62

Query: 66  SGGEKVINCPDSDYILDAAEEAGMDIPYSCRAGACSTCVAKLKSGKVDQSDVSYLDEKQI 125
             GE+ + C +  Y+LDAAEEAG+D+PYSCRAG+CS+C  K+ SG +DQSD S+LD++Q+
Sbjct: 63  PEGEQEVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQM 122

Query: 126 ANGWVLTCMASPLSDIVIETHKEE 144
           + G+VLTC+A P SD+VIETHKEE
Sbjct: 123 SEGYVLTCVAYPTSDVVIETHKEE 145

[Close]

BLAST of Tan0017475.1 vs. ExPASy Swiss-Prot
Match: P16972 (Ferredoxin-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD2 PE=1 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 2.9e-41
Identity = 86/144 (59.72%), Postives = 109/144 (75.69%), Query Frame = 0


Query: 6   TTALSSPITTSSFLRRP----TLRPVSNVG-ERLFGLQKGSSRGGRVTAMATYKVKLITS 65
           +TALSS I  +SF+RR     +LR + +   + LFGL+ G++RGGRVTAMATYKVK IT 
Sbjct: 3   STALSSAIVGTSFIRRSPAPISLRSLPSANTQSLFGLKSGTARGGRVTAMATYKVKFITP 62

Query: 66  GGEKVINCPDSDYILDAAEEAGMDIPYSCRAGACSTCVAKLKSGKVDQSDVSYLDEKQIA 125
            GE  + C D  Y+LDAAEEAG+D+PYSCRAG+CS+C  K+ SG VDQSD S+LD++QI 
Sbjct: 63  EGELEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQIG 122

Query: 126 NGWVLTCMASPLSDIVIETHKEEE 145
            G+VLTC A P SD+ IETHKEE+
Sbjct: 123 EGFVLTCAAYPTSDVTIETHKEED 146

[Close]

BLAST of Tan0017475.1 vs. ExPASy Swiss-Prot
Match: Q9ZTS2 (Ferredoxin, chloroplastic OS=Capsicum annuum OX=4072 GN=AP1 PE=1 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 3.5e-39
Identity = 84/150 (56.00%), Postives = 107/150 (71.33%), Query Frame = 0


Query: 1   MASTTTTALSSPITTSSFLRRP---TLRPVSNVGERLFGLQKGSSRGGRVTAMATYKVKL 60
           MAS + T +S    TS   R+P   +L+P+ NVGE LFGL+  S+ GG+VT MA+YKVKL
Sbjct: 1   MASVSATMIS----TSFMPRKPAVTSLKPIPNVGEALFGLK--SANGGKVTCMASYKVKL 60

Query: 61  ITSGGEKVINCPDSDYILDAAEEAGMDIPYSCRAGACSTCVAKLKSGKVDQSDVSYLDEK 120
           IT  G    +CPD+ YILD AEEAG D+PYSCRAG+CS+C  K+  G VDQ+D ++LD+ 
Sbjct: 61  ITPDGPIEFDCPDNVYILDQAEEAGHDLPYSCRAGSCSSCAGKIAGGAVDQTDGNFLDDD 120

Query: 121 QIANGWVLTCMASPLSDIVIETHKEEEFSG 148
           Q+  GWVLTC+A P SD+ IETHKE E  G
Sbjct: 121 QLEEGWVLTCVAYPQSDVTIETHKEAELVG 144

[Close]

BLAST of Tan0017475.1 vs. ExPASy Swiss-Prot
Match: O04683 (Ferredoxin-1, chloroplastic OS=Mesembryanthemum crystallinum OX=3544 PE=2 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 3.0e-38
Identity = 80/148 (54.05%), Postives = 105/148 (70.95%), Query Frame = 0


Query: 1   MASTTTTALSSPITTSSFLRRPTLRPV--SNVGERLFGLQKGSSRGGRVTAMATYKVKLI 60
           MA+TT     + ++T+   + P +     +NVG  LFGL+  +SR GRVTAMA YKV L+
Sbjct: 1   MAATTAALSGATMSTAFAPKTPPMTAALPTNVGRALFGLKSSASR-GRVTAMAAYKVTLV 60

Query: 61  TSGGEKVINCPDSDYILDAAEEAGMDIPYSCRAGACSTCVAKLKSGKVDQSDVSYLDEKQ 120
           T  G++ + CPD  YILDAAEEAG+D+PYSCRAG+CS+C  K+ SG V+Q D S+LD+ Q
Sbjct: 61  TPEGKQELECPDDVYILDAAEEAGIDLPYSCRAGSCSSCAGKVTSGSVNQDDGSFLDDDQ 120

Query: 121 IANGWVLTCMASPLSDIVIETHKEEEFS 147
           I  GWVLTC+A P  D+ IETHKEEE +
Sbjct: 121 IKEGWVLTCVAYPTGDVTIETHKEEELT 147

[Close]

BLAST of Tan0017475.1 vs. ExPASy Swiss-Prot
Match: P00221 (Ferredoxin-1, chloroplastic OS=Spinacia oleracea OX=3562 GN=PETF PE=1 SV=2)

HSP 1 Score: 157.9 bits (398), Expect = 8.7e-38
Identity = 84/151 (55.63%), Postives = 104/151 (68.87%), Query Frame = 0


Query: 1   MASTTTTALSSPITTSSFLRRPTLRPV-----SNVGERLFGLQKGSSRGGRVTAMATYKV 60
           MA+TTTT +    T   F+ +P   P+     SN G  LFGL+ G SRGGR+T MA YKV
Sbjct: 1   MAATTTTMMGMATT---FVPKPQAPPMMAALPSNTGRSLFGLKTG-SRGGRMT-MAAYKV 60

Query: 61  KLITSGGEKVINCPDSDYILDAAEEAGMDIPYSCRAGACSTCVAKLKSGKVDQSDVSYLD 120
            L+T  G     CPD  YILDAAEE G+D+PYSCRAG+CS+C  KLK+G ++Q D S+LD
Sbjct: 61  TLVTPTGNVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLD 120

Query: 121 EKQIANGWVLTCMASPLSDIVIETHKEEEFS 147
           + QI  GWVLTC A P+SD+ IETHKEEE +
Sbjct: 121 DDQIDEGWVLTCAAYPVSDVTIETHKEEELT 146

[Close]

BLAST of Tan0017475.1 vs. NCBI nr
Match: XP_022136605.1 (ferredoxin-2-like [Momordica charantia])

HSP 1 Score: 218.0 bits (554), Expect = 5.4e-53
Identity = 110/145 (75.86%), Postives = 123/145 (84.83%), Query Frame = 0


Query: 3   STTTTALSSPITTSSFLRRPTLRPVSNVGERLFGLQKGSSRGGRVTAMATYKVKLITSGG 62
           +TTTTAL SPIT  SFL     RPVSNVGE LFGLQKG SR GRVTAMATYKVKLIT  G
Sbjct: 2   TTTTTALCSPIT--SFLGTARPRPVSNVGEGLFGLQKGCSRSGRVTAMATYKVKLITPSG 61

Query: 63  EKVINCPDSDYILDAAEEAGMDIPYSCRAGACSTCVAKLKSGKVDQSDVSYLDEKQIANG 122
           EKV++C DSDYILDAAE  G+++P+SCRAGACS+CV KLKSGK+DQSDVS+LDE QI  G
Sbjct: 62  EKVVDCLDSDYILDAAEAKGLELPHSCRAGACSSCVGKLKSGKLDQSDVSFLDEDQIEEG 121

Query: 123 WVLTCMASPLSDIVIETHKEEEFSG 148
           WVLTC+ASP+SD+VIETHK EEF G
Sbjct: 122 WVLTCLASPMSDVVIETHKAEEFPG 144

[Close]

BLAST of Tan0017475.1 vs. NCBI nr
Match: XP_022941964.1 (ferredoxin-like [Cucurbita moschata] >XP_022983176.1 ferredoxin-like [Cucurbita maxima] >XP_023547581.1 ferredoxin-like [Cucurbita pepo subsp. pepo] >KAG6600367.1 Ferredoxin-2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031026.1 Ferredoxin-2, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 193.4 bits (490), Expect = 1.4e-45
Identity = 99/148 (66.89%), Postives = 119/148 (80.41%), Query Frame = 0


Query: 5   TTTALSSPITTSSFLRRP------TLRPVSNVGERLFGLQKGSSRGGRVTAMATYKVKLI 64
           +TTAL++PI  +SFLRR       +LRP  NVG+ LFGL+ GSSRGG +T MA YKVKLI
Sbjct: 3   STTALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVMA-YKVKLI 62

Query: 65  TSGGEKVINCPDSDYILDAAEEAGMDIPYSCRAGACSTCVAKLKSGKVDQSDVSYLDEKQ 124
           T  GEK I C   DYILDAAEE+G+D+PYSCRAGACS+C+ KLKSGKVDQSD S+LD++Q
Sbjct: 63  TPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQQ 122

Query: 125 IANGWVLTCMASPLSDIVIETHKEEEFS 147
           + +GWVLTC+A P SDIVIETHKEE F+
Sbjct: 123 MEDGWVLTCVARPESDIVIETHKEEVFA 149

[Close]

BLAST of Tan0017475.1 vs. NCBI nr
Match: XP_008456215.1 (PREDICTED: ferredoxin-like [Cucumis melo] >KAA0038965.1 ferredoxin-like [Cucumis melo var. makuwa])

HSP 1 Score: 191.0 bits (484), Expect = 7.1e-45
Identity = 97/141 (68.79%), Postives = 111/141 (78.72%), Query Frame = 0


Query: 10  SSPITTSSFLR----RPTLRPVSNVGERLFGLQKGSSRGGRVTAMATYKVKLITSGGEKV 69
           S PITT+SFLR      TLR   NVGE LFGLQK   RG RVTAMATYKVKLIT  G K 
Sbjct: 3   SIPITTTSFLRYQLLTTTLRSAPNVGECLFGLQK---RGSRVTAMATYKVKLITPSGVKE 62

Query: 70  INCPDSDYILDAAEEAGMDIPYSCRAGACSTCVAKLKSGKVDQSDVSYLDEKQIANGWVL 129
           I CPD +YIL+ AE+ G+D+PYSCRAGACS+C  KL SGKVDQS++S+LD+ QIA GWV+
Sbjct: 63  IKCPDDNYILNVAEDEGLDLPYSCRAGACSSCAGKLISGKVDQSNISFLDDDQIAKGWVI 122

Query: 130 TCMASPLSDIVIETHKEEEFS 147
            CMA PLSD+VIETHKEEEF+
Sbjct: 123 NCMAYPLSDVVIETHKEEEFT 140

[Close]

BLAST of Tan0017475.1 vs. NCBI nr
Match: TYK11179.1 (ferredoxin-like [Cucumis melo var. makuwa])

HSP 1 Score: 189.5 bits (480), Expect = 2.1e-44
Identity = 97/141 (68.79%), Postives = 110/141 (78.01%), Query Frame = 0


Query: 10  SSPITTSSFLR----RPTLRPVSNVGERLFGLQKGSSRGGRVTAMATYKVKLITSGGEKV 69
           S PITT+SFLR      TLR   NVGE LFGLQK   RG RVTAMATYKVKLIT  G K 
Sbjct: 3   SIPITTTSFLRYQLLTTTLRSAPNVGECLFGLQK---RGSRVTAMATYKVKLITPSGVKE 62

Query: 70  INCPDSDYILDAAEEAGMDIPYSCRAGACSTCVAKLKSGKVDQSDVSYLDEKQIANGWVL 129
           I CPD +YIL+ AE+ G+D+PYSCRAGACS+C  KL SGKVDQS+VS+LD+  IA GWV+
Sbjct: 63  IKCPDDNYILNVAEDEGLDLPYSCRAGACSSCAGKLISGKVDQSNVSFLDDDHIAKGWVI 122

Query: 130 TCMASPLSDIVIETHKEEEFS 147
            CMA PLSD+VIETHKEEEF+
Sbjct: 123 NCMAYPLSDVVIETHKEEEFT 140

[Close]

BLAST of Tan0017475.1 vs. NCBI nr
Match: XP_022136604.1 (ferredoxin-like [Momordica charantia])

HSP 1 Score: 186.8 bits (473), Expect = 1.3e-43
Identity = 99/146 (67.81%), Postives = 115/146 (78.77%), Query Frame = 0


Query: 5   TTTALSSPITTSSFLR-RPT--LRPVSNVGERLFGLQKGSSRGGRVTAMATYKVKLITSG 64
           +TTALS PI  +SFLR +P   LRP  N+G+ +FGL KG SRGGRV AMA YKV LIT  
Sbjct: 3   STTALSGPIPATSFLRGQPAAGLRPFPNMGQGVFGL-KGGSRGGRVRAMA-YKVTLITPS 62

Query: 65  GEKVINCPDSDYILDAAEEAGMDIPYSCRAGACSTCVAKLKSGKVDQSDVSYLDEKQIAN 124
           GEK + CP   YILDAAEE G+D+PYSCRAGACS+CV K+ SGKVDQSD S+LD+ Q+A 
Sbjct: 63  GEKSVKCPPDSYILDAAEEDGLDLPYSCRAGACSSCVGKVVSGKVDQSDNSFLDDDQMAE 122

Query: 125 GWVLTCMASPLSDIVIETHKEEEFSG 148
           GWVLTC+A P SD+VIETHKE EFSG
Sbjct: 123 GWVLTCVAYPQSDVVIETHKEGEFSG 146

[Close]

BLAST of Tan0017475.1 vs. ExPASy TrEMBL
Match: A0A6J1C4E2 (Ferredoxin OS=Momordica charantia OX=3673 GN=LOC111008271 PE=3 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 2.6e-53
Identity = 110/145 (75.86%), Postives = 123/145 (84.83%), Query Frame = 0


Query: 3   STTTTALSSPITTSSFLRRPTLRPVSNVGERLFGLQKGSSRGGRVTAMATYKVKLITSGG 62
           +TTTTAL SPIT  SFL     RPVSNVGE LFGLQKG SR GRVTAMATYKVKLIT  G
Sbjct: 2   TTTTTALCSPIT--SFLGTARPRPVSNVGEGLFGLQKGCSRSGRVTAMATYKVKLITPSG 61

Query: 63  EKVINCPDSDYILDAAEEAGMDIPYSCRAGACSTCVAKLKSGKVDQSDVSYLDEKQIANG 122
           EKV++C DSDYILDAAE  G+++P+SCRAGACS+CV KLKSGK+DQSDVS+LDE QI  G
Sbjct: 62  EKVVDCLDSDYILDAAEAKGLELPHSCRAGACSSCVGKLKSGKLDQSDVSFLDEDQIEEG 121

Query: 123 WVLTCMASPLSDIVIETHKEEEFSG 148
           WVLTC+ASP+SD+VIETHK EEF G
Sbjct: 122 WVLTCLASPMSDVVIETHKAEEFPG 144

[Close]

BLAST of Tan0017475.1 vs. ExPASy TrEMBL
Match: A0A6J1J1D5 (Ferredoxin OS=Cucurbita maxima OX=3661 GN=LOC111481826 PE=3 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 6.9e-46
Identity = 99/148 (66.89%), Postives = 119/148 (80.41%), Query Frame = 0


Query: 5   TTTALSSPITTSSFLRRP------TLRPVSNVGERLFGLQKGSSRGGRVTAMATYKVKLI 64
           +TTAL++PI  +SFLRR       +LRP  NVG+ LFGL+ GSSRGG +T MA YKVKLI
Sbjct: 3   STTALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVMA-YKVKLI 62

Query: 65  TSGGEKVINCPDSDYILDAAEEAGMDIPYSCRAGACSTCVAKLKSGKVDQSDVSYLDEKQ 124
           T  GEK I C   DYILDAAEE+G+D+PYSCRAGACS+C+ KLKSGKVDQSD S+LD++Q
Sbjct: 63  TPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQQ 122

Query: 125 IANGWVLTCMASPLSDIVIETHKEEEFS 147
           + +GWVLTC+A P SDIVIETHKEE F+
Sbjct: 123 MEDGWVLTCVARPESDIVIETHKEEVFA 149

[Close]

BLAST of Tan0017475.1 vs. ExPASy TrEMBL
Match: A0A6J1FPZ2 (Ferredoxin OS=Cucurbita moschata OX=3662 GN=LOC111447172 PE=3 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 6.9e-46
Identity = 99/148 (66.89%), Postives = 119/148 (80.41%), Query Frame = 0


Query: 5   TTTALSSPITTSSFLRRP------TLRPVSNVGERLFGLQKGSSRGGRVTAMATYKVKLI 64
           +TTAL++PI  +SFLRR       +LRP  NVG+ LFGL+ GSSRGG +T MA YKVKLI
Sbjct: 3   STTALTAPIPVTSFLRRQQPVTGVSLRPFPNVGQSLFGLKLGSSRGGSMTVMA-YKVKLI 62

Query: 65  TSGGEKVINCPDSDYILDAAEEAGMDIPYSCRAGACSTCVAKLKSGKVDQSDVSYLDEKQ 124
           T  GEK I C   DYILDAAEE+G+D+PYSCRAGACS+C+ KLKSGKVDQSD S+LD++Q
Sbjct: 63  TPEGEKEIECSGDDYILDAAEESGVDLPYSCRAGACSSCIGKLKSGKVDQSDNSFLDDQQ 122

Query: 125 IANGWVLTCMASPLSDIVIETHKEEEFS 147
           + +GWVLTC+A P SDIVIETHKEE F+
Sbjct: 123 MEDGWVLTCVARPESDIVIETHKEEVFA 149

[Close]

BLAST of Tan0017475.1 vs. ExPASy TrEMBL
Match: A0A5A7TC46 (Ferredoxin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G00430 PE=3 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 3.4e-45
Identity = 97/141 (68.79%), Postives = 111/141 (78.72%), Query Frame = 0


Query: 10  SSPITTSSFLR----RPTLRPVSNVGERLFGLQKGSSRGGRVTAMATYKVKLITSGGEKV 69
           S PITT+SFLR      TLR   NVGE LFGLQK   RG RVTAMATYKVKLIT  G K 
Sbjct: 3   SIPITTTSFLRYQLLTTTLRSAPNVGECLFGLQK---RGSRVTAMATYKVKLITPSGVKE 62

Query: 70  INCPDSDYILDAAEEAGMDIPYSCRAGACSTCVAKLKSGKVDQSDVSYLDEKQIANGWVL 129
           I CPD +YIL+ AE+ G+D+PYSCRAGACS+C  KL SGKVDQS++S+LD+ QIA GWV+
Sbjct: 63  IKCPDDNYILNVAEDEGLDLPYSCRAGACSSCAGKLISGKVDQSNISFLDDDQIAKGWVI 122

Query: 130 TCMASPLSDIVIETHKEEEFS 147
            CMA PLSD+VIETHKEEEF+
Sbjct: 123 NCMAYPLSDVVIETHKEEEFT 140

[Close]

BLAST of Tan0017475.1 vs. ExPASy TrEMBL
Match: A0A1S3C2Q0 (Ferredoxin OS=Cucumis melo OX=3656 GN=LOC103496218 PE=3 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 3.4e-45
Identity = 97/141 (68.79%), Postives = 111/141 (78.72%), Query Frame = 0


Query: 10  SSPITTSSFLR----RPTLRPVSNVGERLFGLQKGSSRGGRVTAMATYKVKLITSGGEKV 69
           S PITT+SFLR      TLR   NVGE LFGLQK   RG RVTAMATYKVKLIT  G K 
Sbjct: 3   SIPITTTSFLRYQLLTTTLRSAPNVGECLFGLQK---RGSRVTAMATYKVKLITPSGVKE 62

Query: 70  INCPDSDYILDAAEEAGMDIPYSCRAGACSTCVAKLKSGKVDQSDVSYLDEKQIANGWVL 129
           I CPD +YIL+ AE+ G+D+PYSCRAGACS+C  KL SGKVDQS++S+LD+ QIA GWV+
Sbjct: 63  IKCPDDNYILNVAEDEGLDLPYSCRAGACSSCAGKLISGKVDQSNISFLDDDQIAKGWVI 122

Query: 130 TCMASPLSDIVIETHKEEEFS 147
            CMA PLSD+VIETHKEEEF+
Sbjct: 123 NCMAYPLSDVVIETHKEEEFT 140

[Close]

BLAST of Tan0017475.1 vs. TAIR 10
Match: AT1G10960.1 (ferredoxin 1 )

HSP 1 Score: 170.2 bits (430), Expect = 1.2e-42
Identity = 86/144 (59.72%), Postives = 113/144 (78.47%), Query Frame = 0


Query: 6   TTALSSPITTSSFLRRP----TLR--PVSNVGERLFGLQKGSSRGGRVTAMATYKVKLIT 65
           +TALSS I ++SFLRR     +LR  P +N  + LFGL+  ++RGGRVTAMATYKVK IT
Sbjct: 3   STALSSAIVSTSFLRRQQTPISLRSLPFANT-QSLFGLKSSTARGGRVTAMATYKVKFIT 62

Query: 66  SGGEKVINCPDSDYILDAAEEAGMDIPYSCRAGACSTCVAKLKSGKVDQSDVSYLDEKQI 125
             GE+ + C +  Y+LDAAEEAG+D+PYSCRAG+CS+C  K+ SG +DQSD S+LD++Q+
Sbjct: 63  PEGEQEVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQM 122

Query: 126 ANGWVLTCMASPLSDIVIETHKEE 144
           + G+VLTC+A P SD+VIETHKEE
Sbjct: 123 SEGYVLTCVAYPTSDVVIETHKEE 145

[Close]

BLAST of Tan0017475.1 vs. TAIR 10
Match: AT1G60950.1 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 169.5 bits (428), Expect = 2.0e-42
Identity = 86/144 (59.72%), Postives = 109/144 (75.69%), Query Frame = 0


Query: 6   TTALSSPITTSSFLRRP----TLRPVSNVG-ERLFGLQKGSSRGGRVTAMATYKVKLITS 65
           +TALSS I  +SF+RR     +LR + +   + LFGL+ G++RGGRVTAMATYKVK IT 
Sbjct: 3   STALSSAIVGTSFIRRSPAPISLRSLPSANTQSLFGLKSGTARGGRVTAMATYKVKFITP 62

Query: 66  GGEKVINCPDSDYILDAAEEAGMDIPYSCRAGACSTCVAKLKSGKVDQSDVSYLDEKQIA 125
            GE  + C D  Y+LDAAEEAG+D+PYSCRAG+CS+C  K+ SG VDQSD S+LD++QI 
Sbjct: 63  EGELEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQIG 122

Query: 126 NGWVLTCMASPLSDIVIETHKEEE 145
            G+VLTC A P SD+ IETHKEE+
Sbjct: 123 EGFVLTCAAYPTSDVTIETHKEED 146

[Close]

BLAST of Tan0017475.1 vs. TAIR 10
Match: AT2G27510.1 (ferredoxin 3 )

HSP 1 Score: 123.2 bits (308), Expect = 1.7e-28
Identity = 74/152 (48.68%), Postives = 90/152 (59.21%), Query Frame = 0


Query: 6   TTALSSPITTSSFLRRPTLRPV-------SNVG-----ERLFGLQKGSSRGGRVTAMATY 65
           T  +SS   T + LR  T   +        +VG      R FGL K S+  G  T  A Y
Sbjct: 3   TVRISSTSMTKAVLRSQTTNKLITNKSYNLSVGSTKRVSRSFGL-KCSANSGGATMSAVY 62

Query: 66  KVKLI-TSGGEKVINCPDSDYILDAAEEAGMDIPYSCRAGACSTCVAKLKSGKVDQSDVS 125
           KVKL+   G E      D  YILDAAEEAG+D+PYSCRAGACSTC  ++ SG VDQSD S
Sbjct: 63  KVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDGS 122

Query: 126 YLDEKQIANGWVLTCMASPLSDIVIETHKEEE 145
           +L++  +  G+VLTC+A P SD VI THKE E
Sbjct: 123 FLEDSHLEKGYVLTCVAYPQSDCVIHTHKETE 153

[Close]

BLAST of Tan0017475.1 vs. TAIR 10
Match: AT5G10000.1 (ferredoxin 4 )

HSP 1 Score: 110.2 bits (274), Expect = 1.5e-24
Identity = 55/111 (49.55%), Postives = 75/111 (67.57%), Query Frame = 0


Query: 35  FGLQKGSSRGGRVTAMATYKVKLIT-SGGEKVINCPDSDYILDAAEEAGMDIPYSCRAGA 94
           FGL       G+V A  + KVKLI+  G E+ I   +   IL++AE AG+++PYSCR+G 
Sbjct: 36  FGLSSSRGNFGKVFAKESRKVKLISPEGEEQEIEGNEDCCILESAENAGLELPYSCRSGT 95

Query: 95  CSTCVAKLKSGKVDQSDVSYLDEKQIANGWVLTCMASPLSDIVIETHKEEE 145
           C TC  KL SGKVDQS  S+L+E+QI  G++LTC+A PL D V+ THK+ +
Sbjct: 96  CGTCCGKLVSGKVDQSLGSFLEEEQIQKGYILTCIALPLEDCVVYTHKQSD 146

[Close]

BLAST of Tan0017475.1 vs. TAIR 10
Match: AT4G14890.1 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 71.6 bits (174), Expect = 5.8e-13
Identity = 50/144 (34.72%), Postives = 71/144 (49.31%), Query Frame = 0


Query: 4   TTTTALSSPITTSSF---LRRPTLRPVSNVGERLFGLQKGSSRGGRVTAMATYKVKLITS 63
           T+T +L  P  ++SF   LR  TL   +N        ++     GR+ A A YKV +   
Sbjct: 10  TSTISLPKPYLSNSFSFPLRNATLSTTTN--------RRNFLTTGRIIARA-YKVVVEHD 69

Query: 64  GGEKVINCPDSDYILDAAEEAGMDIPYSCRAGACSTCVAKLKSGKVDQSDVSYLDEKQIA 123
           G    +     + IL  A ++G+D+PY C  G C TC AKL +G VDQS    L +  + 
Sbjct: 70  GKTTELEVEPDETILSKALDSGLDVPYDCNLGVCMTCPAKLVTGTVDQSG-GMLSDDVVE 129

Query: 124 NGWVLTCMASPLSDIVIETHKEEE 145
            G+ L C + P SD  I+   EEE
Sbjct: 130 RGYTLLCASYPTSDCHIKMIPEEE 143

The following BLAST results are available for this feature:

BLAST of Tan0017475.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O04090	1.7e-41	59.72	Ferredoxin-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD1 PE=1 SV=1	[more]
P16972	2.9e-41	59.72	Ferredoxin-2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD2 PE=1 SV=1	[more]
Q9ZTS2	3.5e-39	56.00	Ferredoxin, chloroplastic OS=Capsicum annuum OX=4072 GN=AP1 PE=1 SV=1	[more]
O04683	3.0e-38	54.05	Ferredoxin-1, chloroplastic OS=Mesembryanthemum crystallinum OX=3544 PE=2 SV=1	[more]
P00221	8.7e-38	55.63	Ferredoxin-1, chloroplastic OS=Spinacia oleracea OX=3562 GN=PETF PE=1 SV=2	[more]

BLAST of Tan0017475.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022136605.1	5.4e-53	75.86	ferredoxin-2-like [Momordica charantia]	[more]
XP_022941964.1	1.4e-45	66.89	ferredoxin-like [Cucurbita moschata] >XP_022983176.1 ferredoxin-like [Cucurbita ...	[more]
XP_008456215.1	7.1e-45	68.79	PREDICTED: ferredoxin-like [Cucumis melo] >KAA0038965.1 ferredoxin-like [Cucumis...	[more]
TYK11179.1	2.1e-44	68.79	ferredoxin-like [Cucumis melo var. makuwa]	[more]
XP_022136604.1	1.3e-43	67.81	ferredoxin-like [Momordica charantia]	[more]

BLAST of Tan0017475.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C4E2	2.6e-53	75.86	Ferredoxin OS=Momordica charantia OX=3673 GN=LOC111008271 PE=3 SV=1	[more]
A0A6J1J1D5	6.9e-46	66.89	Ferredoxin OS=Cucurbita maxima OX=3661 GN=LOC111481826 PE=3 SV=1	[more]
A0A6J1FPZ2	6.9e-46	66.89	Ferredoxin OS=Cucurbita moschata OX=3662 GN=LOC111447172 PE=3 SV=1	[more]
A0A5A7TC46	3.4e-45	68.79	Ferredoxin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G00430 PE=3...	[more]
A0A1S3C2Q0	3.4e-45	68.79	Ferredoxin OS=Cucumis melo OX=3656 GN=LOC103496218 PE=3 SV=1	[more]

BLAST of Tan0017475.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G10960.1	1.2e-42	59.72	ferredoxin 1	[more]
AT1G60950.1	2.0e-42	59.72	2Fe-2S ferredoxin-like superfamily protein	[more]
AT2G27510.1	1.7e-28	48.68	ferredoxin 3	[more]
AT5G10000.1	1.5e-24	49.55	ferredoxin 4	[more]
AT4G14890.1	5.8e-13	34.72	2Fe-2S ferredoxin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012675	Beta-grasp domain superfamily	GENE3D	3.10.20.30		coord: 50..146 e-value: 8.7E-36 score: 123.7
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PFAM	PF00111	Fer2	coord: 61..130 e-value: 3.0E-18 score: 65.5
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PROSITE	PS51085	2FE2S_FER_2	coord: 53..143 score: 13.160425
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	CDD	cd00207	fer2	coord: 55..138 e-value: 1.51193E-30 score: 103.629
IPR010241	Ferredoxin [2Fe-2S], plant	TIGRFAM	TIGR02008	TIGR02008	coord: 51..145 e-value: 2.3E-43 score: 143.9
None	No IPR available	PANTHER	PTHR43112	FERREDOXIN	coord: 6..143
None	No IPR available	PANTHER	PTHR43112:SF17	FERREDOXIN-1, CHLOROPLASTIC	coord: 6..143
IPR006058	2Fe-2S ferredoxin, iron-sulphur binding site	PROSITE	PS00197	2FE2S_FER_1	coord: 89..97
IPR036010	2Fe-2S ferredoxin-like superfamily	SUPERFAMILY	54292	2Fe-2S ferredoxin-like	coord: 27..143

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Tan0017475	Tan0017475	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0017475.1-five_prime_utr	Tan0017475.1-five_prime_utr-LG01:7481209..7482669	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0017475.1-exon	Tan0017475.1-exon-LG01:7481209..7483348	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0017475.1-cds	Tan0017475.1-cds-LG01:7482670..7483113	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0017475.1-three_prime_utr	Tan0017475.1-three_prime_utr-LG01:7483114..7483348	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Tan0017475.1	Tan0017475.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
cellular_component	GO:0098588	bounding membrane of organelle
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0012505	endomembrane system
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0051536	iron-sulfur cluster binding
molecular_function	GO:0046872	metal ion binding