Tan0017041.1 (mRNA) Snake gourd v1

Overview


Name	Tan0017041.1
Type	mRNA
Organism	Trichosanthes anguina (Snake gourd v1)
Description	30S ribosomal protein S17, chloroplastic
Location	LG04: 46136722 .. 46137397 (-)
Sequence length	315
RNA-Seq Expression	Tan0017041.1
Synteny	Tan0017041.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCAGGTTGTGGGGATGGTGGTCTCAAACAAAATGCAGAAATCGGTGGTGGTTGCAGTGGACAGGTTGTTCTATCACAAGCTCTATAATCGTTACGTTAAACGCACTTCTAAGTTCATGGCTCATGACGAGAACAACCAGTGCAATATTGGTGACAAGGTTCGAATTCAATCACATCTTTACTCCCCCAATTGATTTGTTTTTCTTCCTTTCAATTTATTCAATCAGGTTGCGGACTCGATTTTTATTACTGGTTACAATATAATGCAAATTTGTTCCACAACATTGTAATATTGGATGAAATGGCCAATGTTCTCTGTATTTTGAAGAATTGCACGCTTTCGTGAATCCTCTGTGTTTGAAGAGTTTATTTATTAAATTTACTAATGCATAACGTTCTTTTATATATTTCTTTTATCATTTTTATTTCTCTGGAACATGAACAGAGAGAGGTTGTCAATATTTTAACATTTATGGTTTCTAATGCACTGATGAAACAATTTGAATTTTATAAAATCAGGTTAAACTAGACCCTTCTAGGCCGTTGAGCAAGCATAAACGCTGGGTGGTTGCTGAAATTTTGAGGAAAGCACGGATTTATGAACCACCATCACAAGATCATAACCGGACTGTTTCAGACAAAAGCAAAGTGCCAGCTCCTTCAACCACCTAA

mRNA sequence

ATGAAGCAGGTTGTGGGGATGGTGGTCTCAAACAAAATGCAGAAATCGGTGGTGGTTGCAGTGGACAGGTTGTTCTATCACAAGCTCTATAATCGTTACGTTAAACGCACTTCTAAGTTCATGGCTCATGACGAGAACAACCAGTGCAATATTGGTGACAAGGTTAAACTAGACCCTTCTAGGCCGTTGAGCAAGCATAAACGCTGGGTGGTTGCTGAAATTTTGAGGAAAGCACGGATTTATGAACCACCATCACAAGATCATAACCGGACTGTTTCAGACAAAAGCAAAGTGCCAGCTCCTTCAACCACCTAA

Coding sequence (CDS)

ATGAAGCAGGTTGTGGGGATGGTGGTCTCAAACAAAATGCAGAAATCGGTGGTGGTTGCAGTGGACAGGTTGTTCTATCACAAGCTCTATAATCGTTACGTTAAACGCACTTCTAAGTTCATGGCTCATGACGAGAACAACCAGTGCAATATTGGTGACAAGGTTAAACTAGACCCTTCTAGGCCGTTGAGCAAGCATAAACGCTGGGTGGTTGCTGAAATTTTGAGGAAAGCACGGATTTATGAACCACCATCACAAGATCATAACCGGACTGTTTCAGACAAAAGCAAAGTGCCAGCTCCTTCAACCACCTAA

Protein sequence

MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSKHKRWVVAEILRKARIYEPPSQDHNRTVSDKSKVPAPSTT

Homology

[Close]

BLAST of Tan0017041.1 vs. ExPASy Swiss-Prot
Match: B1I1J7 (30S ribosomal protein S17 OS=Desulforudis audaxviator (strain MP104C) OX=477974 GN=rpsQ PE=3 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.1e-21
Identity = 50/75 (66.67%), Postives = 61/75 (81.33%), Query Frame = 0


Query: 6  GMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLSK 65
          G VVS+KM K+VVVAVD L  H LY R V+RT KFMAHDE+NQC IGDKVK+  +RPLS+
Sbjct: 11 GRVVSDKMDKTVVVAVDTLVKHPLYGRTVRRTRKFMAHDEDNQCRIGDKVKIAETRPLSR 70

Query: 66 HKRWVVAEILRKARI 81
          HKRW VAE+L +++I
Sbjct: 71 HKRWRVAEVLERSQI 85

[Close]

BLAST of Tan0017041.1 vs. ExPASy Swiss-Prot
Match: A7HM43 (30S ribosomal protein S17 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) OX=381764 GN=rpsQ PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.5e-20
Identity = 47/83 (56.63%), Postives = 63/83 (75.90%), Query Frame = 0


Query: 2  KQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSR 61
          K++VG+VVS+KM K+V V V+RL  H  + +YVKRT KF AHDENN C +GD V+++ SR
Sbjct: 4  KRLVGVVVSDKMDKTVTVKVERLVKHAKFGKYVKRTKKFYAHDENNACRVGDVVEIEESR 63

Query: 62 PLSKHKRWVVAEILRKARIYEPP 85
          PLSK KRWVV  IL ++++ E P
Sbjct: 64 PLSKLKRWVVVNILERSKLSETP 86

[Close]

BLAST of Tan0017041.1 vs. ExPASy Swiss-Prot
Match: Q8R7W3 (30S ribosomal protein S17 OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) OX=273068 GN=rpsQ PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.9e-19
Identity = 44/74 (59.46%), Postives = 57/74 (77.03%), Query Frame = 0


Query: 5  VGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSRPLS 64
          +G VVSNKMQK++VVAV+  F H LY + VKRT K+  HDENN CN+GD VK+  +RPLS
Sbjct: 10 IGTVVSNKMQKTIVVAVEDKFRHPLYGKIVKRTKKYKVHDENNICNVGDVVKIMETRPLS 69

Query: 65 KHKRWVVAEILRKA 79
          K KRW + E+++KA
Sbjct: 70 KEKRWRLVEVIKKA 83

[Close]

BLAST of Tan0017041.1 vs. ExPASy Swiss-Prot
Match: B9MKH2 (30S ribosomal protein S17 OS=Caldicellulosiruptor bescii (strain ATCC BAA-1888 / DSM 6725 / Z-1320) OX=521460 GN=rpsQ PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 4.9e-19
Identity = 46/78 (58.97%), Postives = 60/78 (76.92%), Query Frame = 0


Query: 2  KQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSR 61
          K  VG+VVS+KM K+VVVAV+R   H LY + +KRT+KF AHDENN+C +GDKV +  +R
Sbjct: 9  KTRVGVVVSDKMDKTVVVAVERHVQHPLYKKTIKRTTKFKAHDENNECRVGDKVLIMETR 68

Query: 62 PLSKHKRWVVAEILRKAR 80
          PLSK KRW V +IL +A+
Sbjct: 69 PLSKEKRWRVVQILERAK 86

[Close]

BLAST of Tan0017041.1 vs. ExPASy Swiss-Prot
Match: A4XLS1 (30S ribosomal protein S17 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903 / Tp8T 6331) OX=351627 GN=rpsQ PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 4.9e-19
Identity = 45/78 (57.69%), Postives = 60/78 (76.92%), Query Frame = 0


Query: 2  KQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPSR 61
          K  +G+VVS+KM K+VVVAV+ L  H LY + +KRT+KF AHDENN+C +GDKV +  +R
Sbjct: 9  KTRIGVVVSDKMDKTVVVAVETLVQHPLYKKTIKRTTKFKAHDENNECRVGDKVLIMETR 68

Query: 62 PLSKHKRWVVAEILRKAR 80
          PLSK KRW V +IL +A+
Sbjct: 69 PLSKEKRWRVVQILERAK 86

[Close]

BLAST of Tan0017041.1 vs. NCBI nr
Match: XP_022989005.1 (uncharacterized protein LOC111486195 [Cucurbita maxima] >XP_022989013.1 uncharacterized protein LOC111486195 [Cucurbita maxima])

HSP 1 Score: 189.9 bits (481), Expect = 1.1e-44
Identity = 97/104 (93.27%), Postives = 100/104 (96.15%), Query Frame = 0


Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPS 60
           MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGD+VKLDPS
Sbjct: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60

Query: 61  RPLSKHKRWVVAEILRKARIYEPPSQDHNRTVSDKSKVPAPSTT 105
           RPLSKHKRWVVAEILRKARIYEPPSQ+ N+ VSDK KV APSTT
Sbjct: 61  RPLSKHKRWVVAEILRKARIYEPPSQE-NQVVSDKGKVSAPSTT 103

[Close]

BLAST of Tan0017041.1 vs. NCBI nr
Match: XP_022943007.1 (uncharacterized protein LOC111447872 [Cucurbita moschata] >XP_022943008.1 uncharacterized protein LOC111447872 [Cucurbita moschata] >XP_023549349.1 uncharacterized protein LOC111807726 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023549358.1 uncharacterized protein LOC111807726 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023549366.1 uncharacterized protein LOC111807726 isoform X2 [Cucurbita pepo subsp. pepo] >KAG7031466.1 rpsQ [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 188.7 bits (478), Expect = 2.5e-44
Identity = 96/104 (92.31%), Postives = 100/104 (96.15%), Query Frame = 0


Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPS 60
           MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGD+VKLDPS
Sbjct: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60

Query: 61  RPLSKHKRWVVAEILRKARIYEPPSQDHNRTVSDKSKVPAPSTT 105
           RPLSKHKRWVVAEILRKARIY+PPSQ+ N+ VSDK KV APSTT
Sbjct: 61  RPLSKHKRWVVAEILRKARIYQPPSQE-NQVVSDKGKVSAPSTT 103

[Close]

BLAST of Tan0017041.1 vs. NCBI nr
Match: XP_016903240.1 (PREDICTED: 30S ribosomal protein S17-like [Cucumis melo])

HSP 1 Score: 188.0 bits (476), Expect = 4.2e-44
Identity = 97/104 (93.27%), Postives = 99/104 (95.19%), Query Frame = 0


Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPS 60
           MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGD+VKLDPS
Sbjct: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60

Query: 61  RPLSKHKRWVVAEILRKARIYEPPSQDHNRTVSDKSKVPAPSTT 105
           RPLSK K WVVAEILRKARIYEPPSQD N+TVSDKS V APSTT
Sbjct: 61  RPLSKRKHWVVAEILRKARIYEPPSQD-NQTVSDKSNVSAPSTT 103

[Close]

BLAST of Tan0017041.1 vs. NCBI nr
Match: KAA0041013.1 (30S ribosomal protein S17-like [Cucumis melo var. makuwa])

HSP 1 Score: 188.0 bits (476), Expect = 4.2e-44
Identity = 97/104 (93.27%), Postives = 99/104 (95.19%), Query Frame = 0


Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPS 60
           MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGD+VKLDPS
Sbjct: 51  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 110

Query: 61  RPLSKHKRWVVAEILRKARIYEPPSQDHNRTVSDKSKVPAPSTT 105
           RPLSK K WVVAEILRKARIYEPPSQD N+TVSDKS V APSTT
Sbjct: 111 RPLSKRKHWVVAEILRKARIYEPPSQD-NQTVSDKSNVSAPSTT 153

[Close]

BLAST of Tan0017041.1 vs. NCBI nr
Match: TYK20371.1 (30S ribosomal protein S17-like [Cucumis melo var. makuwa])

HSP 1 Score: 188.0 bits (476), Expect = 4.2e-44
Identity = 97/104 (93.27%), Postives = 99/104 (95.19%), Query Frame = 0


Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPS 60
           MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGD+VKLDPS
Sbjct: 51  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 110

Query: 61  RPLSKHKRWVVAEILRKARIYEPPSQDHNRTVSDKSKVPAPSTT 105
           RPLSK K WVVAEILRKARIYEPPSQD N+TVSDKS V APSTT
Sbjct: 111 RPLSKRKHWVVAEILRKARIYEPPSQD-NQTVSDKSNVSAPSTT 153

[Close]

BLAST of Tan0017041.1 vs. ExPASy TrEMBL
Match: A0A6J1JP01 (30S ribosomal protein S17, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111486195 PE=3 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 5.4e-45
Identity = 97/104 (93.27%), Postives = 100/104 (96.15%), Query Frame = 0


Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPS 60
           MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGD+VKLDPS
Sbjct: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60

Query: 61  RPLSKHKRWVVAEILRKARIYEPPSQDHNRTVSDKSKVPAPSTT 105
           RPLSKHKRWVVAEILRKARIYEPPSQ+ N+ VSDK KV APSTT
Sbjct: 61  RPLSKHKRWVVAEILRKARIYEPPSQE-NQVVSDKGKVSAPSTT 103

[Close]

BLAST of Tan0017041.1 vs. ExPASy TrEMBL
Match: A0A6J1FRT9 (30S ribosomal protein S17, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111447872 PE=3 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.2e-44
Identity = 96/104 (92.31%), Postives = 100/104 (96.15%), Query Frame = 0


Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPS 60
           MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGD+VKLDPS
Sbjct: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60

Query: 61  RPLSKHKRWVVAEILRKARIYEPPSQDHNRTVSDKSKVPAPSTT 105
           RPLSKHKRWVVAEILRKARIY+PPSQ+ N+ VSDK KV APSTT
Sbjct: 61  RPLSKHKRWVVAEILRKARIYQPPSQE-NQVVSDKGKVSAPSTT 103

[Close]

BLAST of Tan0017041.1 vs. ExPASy TrEMBL
Match: A0A5D3D9X1 (30S ribosomal protein S17, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold228G00680 PE=3 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 2.0e-44
Identity = 97/104 (93.27%), Postives = 99/104 (95.19%), Query Frame = 0


Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPS 60
           MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGD+VKLDPS
Sbjct: 51  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 110

Query: 61  RPLSKHKRWVVAEILRKARIYEPPSQDHNRTVSDKSKVPAPSTT 105
           RPLSK K WVVAEILRKARIYEPPSQD N+TVSDKS V APSTT
Sbjct: 111 RPLSKRKHWVVAEILRKARIYEPPSQD-NQTVSDKSNVSAPSTT 153

[Close]

BLAST of Tan0017041.1 vs. ExPASy TrEMBL
Match: A0A5A7TD01 (30S ribosomal protein S17, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold125G002330 PE=3 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 2.0e-44
Identity = 97/104 (93.27%), Postives = 99/104 (95.19%), Query Frame = 0


Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPS 60
           MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGD+VKLDPS
Sbjct: 51  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 110

Query: 61  RPLSKHKRWVVAEILRKARIYEPPSQDHNRTVSDKSKVPAPSTT 105
           RPLSK K WVVAEILRKARIYEPPSQD N+TVSDKS V APSTT
Sbjct: 111 RPLSKRKHWVVAEILRKARIYEPPSQD-NQTVSDKSNVSAPSTT 153

[Close]

BLAST of Tan0017041.1 vs. ExPASy TrEMBL
Match: A0A1S4E5I9 (30S ribosomal protein S17, chloroplastic OS=Cucumis melo OX=3656 GN=LOC107992092 PE=3 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 2.0e-44
Identity = 97/104 (93.27%), Postives = 99/104 (95.19%), Query Frame = 0


Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPS 60
           MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGD+VKLDPS
Sbjct: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDRVKLDPS 60

Query: 61  RPLSKHKRWVVAEILRKARIYEPPSQDHNRTVSDKSKVPAPSTT 105
           RPLSK K WVVAEILRKARIYEPPSQD N+TVSDKS V APSTT
Sbjct: 61  RPLSKRKHWVVAEILRKARIYEPPSQD-NQTVSDKSNVSAPSTT 103

[Close]

BLAST of Tan0017041.1 vs. TAIR 10
Match: AT1G49400.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 139.0 bits (349), Expect = 2.1e-33
Identity = 71/104 (68.27%), Postives = 85/104 (81.73%), Query Frame = 0


Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPS 60
           MK V+G VVSNKMQKSVVVAVDRLF++K+YNRYVKRTSKFMAHD+ + CNIGD+VKLDPS
Sbjct: 1   MKPVIGTVVSNKMQKSVVVAVDRLFHNKIYNRYVKRTSKFMAHDDKDACNIGDRVKLDPS 60

Query: 61  RPLSKHKRWVVAEILRKARIYEPPSQDHNRTVSDKSKVPAPSTT 105
           RPLSK+K W+VAEI++KARIY P +      VS  +   + STT
Sbjct: 61  RPLSKNKHWIVAEIIKKARIYSPKAA--AAAVSASASASSASTT 102

[Close]

BLAST of Tan0017041.1 vs. TAIR 10
Match: AT3G18880.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 138.7 bits (348), Expect = 2.7e-33
Identity = 65/83 (78.31%), Postives = 75/83 (90.36%), Query Frame = 0


Query: 1  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPS 60
          MK V+G VVSNKMQ SVVVAVDRLF++ +YNRYVKRTSKFMAHDE + CNIGD+VKLDPS
Sbjct: 1  MKAVIGTVVSNKMQMSVVVAVDRLFHNNIYNRYVKRTSKFMAHDEKDSCNIGDRVKLDPS 60

Query: 61 RPLSKHKRWVVAEILRKARIYEP 84
          RPLSKHK W+V+EI++KARIY P
Sbjct: 61 RPLSKHKHWIVSEIIKKARIYSP 83

[Close]

BLAST of Tan0017041.1 vs. TAIR 10
Match: AT1G79850.1 (ribosomal protein S17 )

HSP 1 Score: 61.2 bits (147), Expect = 5.6e-10
Identity = 33/78 (42.31%), Postives = 46/78 (58.97%), Query Frame = 0


Query: 1   MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDENNQCNIGDKVKLDPS 60
           MK + G VV     K+V V V RL  H  Y R V+   K+ AHD +NQ  +GD V+L+ S
Sbjct: 50  MKTMQGRVVCATSDKTVAVEVVRLAPHPKYKRRVRMKKKYQAHDPDNQFKVGDVVRLEKS 109

Query: 61  RPLSKHKRWVVAEILRKA 79
           RP+SK K +V   ++ +A
Sbjct: 110 RPISKTKSFVALPVIARA 127

[Close]

BLAST of Tan0017041.1 vs. TAIR 10
Match: AT4G30800.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 43.1 bits (100), Expect = 1.6e-04
Identity = 27/71 (38.03%), Postives = 39/71 (54.93%), Query Frame = 0


Query: 6   GMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAH-DENNQCNIGDKVKLDPSRPLS 65
           G   S KMQ++++V  D L + K Y RY KR S   AH     +   GD+V +   RPLS
Sbjct: 74  GTCHSAKMQRTIIVRRDYLHFVKKYRRYEKRHSNIPAHVSPCFRVKEGDRVTIGQCRPLS 133

Query: 66  KHKRWVVAEIL 76
           K  R+ V +++
Sbjct: 134 KTVRFNVLKVI 144

The following BLAST results are available for this feature:

BLAST of Tan0017041.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B1I1J7	1.1e-21	66.67	30S ribosomal protein S17 OS=Desulforudis audaxviator (strain MP104C) OX=477974 ...	[more]
A7HM43	1.5e-20	56.63	30S ribosomal protein S17 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5...	[more]
Q8R7W3	2.9e-19	59.46	30S ribosomal protein S17 OS=Caldanaerobacter subterraneus subsp. tengcongensis ...	[more]
B9MKH2	4.9e-19	58.97	30S ribosomal protein S17 OS=Caldicellulosiruptor bescii (strain ATCC BAA-1888 /...	[more]
A4XLS1	4.9e-19	57.69	30S ribosomal protein S17 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 4...	[more]

BLAST of Tan0017041.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022989005.1	1.1e-44	93.27	uncharacterized protein LOC111486195 [Cucurbita maxima] >XP_022989013.1 uncharac...	[more]
XP_022943007.1	2.5e-44	92.31	uncharacterized protein LOC111447872 [Cucurbita moschata] >XP_022943008.1 unchar...	[more]
XP_016903240.1	4.2e-44	93.27	PREDICTED: 30S ribosomal protein S17-like [Cucumis melo]	[more]
KAA0041013.1	4.2e-44	93.27	30S ribosomal protein S17-like [Cucumis melo var. makuwa]	[more]
TYK20371.1	4.2e-44	93.27	30S ribosomal protein S17-like [Cucumis melo var. makuwa]	[more]

BLAST of Tan0017041.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JP01	5.4e-45	93.27	30S ribosomal protein S17, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A6J1FRT9	1.2e-44	92.31	30S ribosomal protein S17, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A5D3D9X1	2.0e-44	93.27	30S ribosomal protein S17, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7TD01	2.0e-44	93.27	30S ribosomal protein S17, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S4E5I9	2.0e-44	93.27	30S ribosomal protein S17, chloroplastic OS=Cucumis melo OX=3656 GN=LOC107992092...	[more]

BLAST of Tan0017041.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G49400.1	2.1e-33	68.27	Nucleic acid-binding, OB-fold-like protein	[more]
AT3G18880.1	2.7e-33	78.31	Nucleic acid-binding, OB-fold-like protein	[more]
AT1G79850.1	5.6e-10	42.31	ribosomal protein S17	[more]
AT4G30800.1	1.6e-04	38.03	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000266	Ribosomal protein S17/S11	PRINTS	PR00973	RIBOSOMALS17	coord: 52..62 score: 49.09 coord: 62..69 score: 67.5 coord: 20..43 score: 37.58
IPR000266	Ribosomal protein S17/S11	PFAM	PF00366	Ribosomal_S17	coord: 6..73 e-value: 9.1E-33 score: 112.2
IPR000266	Ribosomal protein S17/S11	PANTHER	PTHR10744	40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER	coord: 1..96
IPR019984	30S ribosomal protein S17	TIGRFAM	TIGR03635	TIGR03635	coord: 2..71 e-value: 5.3E-31 score: 104.5
IPR019984	30S ribosomal protein S17	HAMAP	MF_01345_B	Ribosomal_S17_B	coord: 1..76 score: 22.353168
None	No IPR available	GENE3D	2.40.50.140		coord: 1..99 e-value: 3.6E-34 score: 118.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..104
None	No IPR available	PANTHER	PTHR10744:SF1	37S RIBOSOMAL PROTEIN S17, MITOCHONDRIAL	coord: 1..96
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 2..84

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Tan0017041	Tan0017041	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0017041.1-cds	Tan0017041.1-cds-LG04:46136722..46136874	CDS
Tan0017041.1-cds	Tan0017041.1-cds-LG04:46137236..46137397	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0017041.1-exon	Tan0017041.1-exon-LG04:46136722..46136874	exon
Tan0017041.1-exon	Tan0017041.1-exon-LG04:46137236..46137397	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Tan0017041.1	Tan0017041.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0019843	rRNA binding