Tan0014039.3 (mRNA) Snake gourd v1

Overview


Name	Tan0014039.3
Type	mRNA
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Transmembrane protein 230
Location	LG11: 30082621 .. 30088666 (-)
Sequence length	1281
RNA-Seq Expression	Tan0014039.3
Synteny	Tan0014039.3

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGCCAAAAAAAATTGCTTAGAAAGGCCAAGATTCTAAAAGGCCTGGGCCCAACTCGAAGTCCAAGATCCATAAATCAAGTCAACCAGTTAAAAAAAAAAAGAAAAAAAAACAGTCACCGTCAAATCGAAGAAACGACGGGCTTTCTCAACAGTCTCCGGTGAGATTTCTAAACAAGCTTCTCTCTGACTTTTCATTTCGGCTGGACTTTCGAAATTTCACGATCGATTTTGCATCGGGTTCTTTCCCCTCTTCAATTGTGTCTTTTTCATCTTCTATTTTAGGTAGAGTCTCCCACTTTTTCTATTGTTGCTCTGGATTGTCGGGATTCAATTGATACTTTTTATGGCTGGAATCTTTTGAATTGTCTGTTCTCTGGTTATATGGAAGGTTGTAAGATTTGTATGCATGTTCATTTTACCTCTTATTAAAGGAAAGAATAATTATAATAGATTATAGTGGAAAAAATTTATTCAAATTTATCACGGGAATCAGTCAAATCAGTCGAGTCTACCTCATTTTCTACTTTTTCAGGATTTGGGAAGAACCTGAGTAACTTGTTGAGGTTGAATGCATGAGATTTTTTCTTAGAACTATATTTTCACTTGTGCTTTCATTTTTCTCATGTCAATTGGTGGGTGATCATTGTAGTTTATGTGCATTTTGAGAAGGGTTATAATCCACTGTGTGCATTTATCATAAGTAATCATGTGAAAATTACAATTTTTCATCCTCCTCTTGATGTCTTTTTGATGTATTTGGTTTTTGATTTCAAAGGTGGCTTGATTTAGTTGAAATTTGAAGACTCCATTCTTGATAATCGCTGTCATGGCATCTAGACGGAATGTTCGTTACAGTTCCCTTGCCACTGATGATAACGATCTTGATTATGATGGAAGTCAATATGACCCTCGCTTTTACTATACACCAAAAGCTTTTGACAAAATTCCGTGGAAGTCTATTGCTCTGGCTATCTTCTTGTTACTTCTTGGATCATTGCTTCTCTTTCTTTCGTACTTCGTATTAACTGGTCACATGGCAGGAGAGAAATCACAAGCTTATGGTCTTTTAGCATTGGGGTTTCTTACCTTCCTCCCAGGTACTGATAAAAAATTATGTTTCATAATTTCTTGAATGTAACTTTATCATTTATTTCCATTTTATGCAAAGTGTCTACTCATTTGGCTTTTGGATTTTGTTTGTTTTCTCTTTTTATAAATGTTGGCTGCTTATTGAGATGGTGAATAATATGAACTTGGCTTCTTTTGATTCTGATGATTTATTGCAGTTAATAAGTTATGAGTGAACTGGCTTCATTTTTTATCATTTGAATGATTTGTAGTATTTGTGGGAGTTGAAGTAAAAGAATTGAAAAGTATGGACTAGTCTATAATGTTGTCCATGGGAAGCCAGATAACCCAAAAGCTCCTCCAGTATTAGTTATCTCGACTGTTGTATTCTTTTTCAATGTGTTGCTCGTAATTATTAATGTAGTAATGTCTTTCTTTTATGAGAACAGCATCATACGAAATCTAGTTATAATGATATGGATTTCTTCCGCATATTTTAAACTCTGTTAAAAACTTAAACCTTCCTTTGTTTCTTATAGCTTCTGTTTTCAAGTAAAAATAGAGACACATCTAATAGGTCTTTCTGTTTCATGTCTTGACACATTTATTTTATGATAGATGGTCATTCAATAGCTATATGTCGTGTATCTTCAAAAGAAAAAAAAAACATAATCTTTTGAATTTTTGGAGATAATAAAATTTTTTCCCTTGATCTAATTTTTTTATGATTTCTCGGAGGATTGTTGGGTGGGTAATAAACCTCTTTGTGTTGTTTGTCCACGGTTATATCATATTTCGAGTAAGAAGTTGCATTTTGTGGGAGTATTACTTTCTTTTGATCCTCCCTTGTCTTTATCTTGGGGTTTTTGTCGTGCTCATACTGATAGAGAAGTGAGAGGTGGTGGATCTTCTTTTTATTATTTGGGAGATGGTTGTGACGCATGGGAGGGAGGAGAGACCTTGGTTTTGGTACCTTGATAGGTCGAGGAATTTTTTGTGTCAGTCTTATTTTAATTTTTTGGTTTTCCTTTCTCCTTCTCTTTCACCCTCTTCTTTCTCTCTGCTCTAGAAGGTTAAAATCCCTTGAAAAGTTAAGTTTTGGGTGTGGCAAGTTTTACATGGAAGAGTCAACAATTTGAACCGAGTTCAACGTCATTCCTGTTTAGTGTTATTCCCATGGTGGTGCGTTGTTCCCATGGTGGCACGTTCTTTTTAGGAGCCAGCTTGAGGACCTGTATCACTTACTTTGGGGTTGTCAGTTTGCTCAATCCTTGAGGGCTCATTCGCTTGTAGTCGTTTGGGTTTTTCTTGGCTTGGAATAGGGATTGTTATGCAGTGGTGGAGGGAGGTGCTTCTGAGCTCGCTCTTCTGTGAGAAGGGCAAAATCTTGTGGCATGCTAGCTTTTTTGCCATTTTGTGGGGTATTTGGCTTGAGCAAAGTAGATCTTTAGGGGCGCGGAGAGGTCTTGTAGTGAGGTTTAGGAGGTGGTGAGGTTTAATGCATAGTTGTGGGTTTTGGTCACAAAGCCTTTTGTGTAATTATGACATTGGCTTGCTGTTGCGTAAAATTATGTTGCAATACCGCAAGTGTACGGGTCAAGTTTTAGTATAGTGATTTAGAGTTCCAAGTATCGTCCTCGGGAATGGGTTTCTAGATTAATTAATTATTAAGGTACTAATTCTCAATTTTAGCTAAAGAAACATAACATGGATAGTTGGTTGAAATAAATACAAACAAACGAACAAACATGTGGAGACACAGATTGATAGATTTGGGAGAAGTGATTTTACAAGTTAAAAACCTAACTAACACATGCATTGAACCAATGAGATGAAATTATAAACAAGAAGTGAAATACTCAAGAAAATCTCTCGATTCTTAGTGAGTCTCACACATGAAATAAACTCATAGTCTCCATATGAACCTACAACATGCATGGCATTAAGCAACTTCTTTATGTGTTTCCCTAAGATTTCTAGGTCACTCGTGCGGACTTCCAAGGGTTTTGACAATTTTGCTCTAATTCAAGCTTTATCTCTCGAGTCCACTTAAATCAACAAATTAAAAAGTAAAGAACGAATTGCCAAAAATAACGACATAACATGCTTCAATACATCACAAGAAAGTCATAACAAGTAATTCAAATCCTAACTACTATGTTTAGCTACTCTAAATCACAAGAAAAACAAACTAAACAAGTAGAAAACGTCTTAGAACGCTATTACAAATTGAAAGAAAGAGAAATAAACTTAGGTATCGATGCCGGTCCTTCGTCTCCGAGCTCCCGTCTTTGATCTCGAACCTCCACGAATGCTTTGGCTCCCAAAATCACTATTTTCTCTCTTCTTACAAGGTGTATTTCGAATTTAGGGCAAAACTCTACCAAATTGTGCTCCCCTTGCAATGAAATCATAAGGATATATTTATAGATATCAATGGGGCAGCGTTGCAACGCTAGGGACAGCGTTGCAACGCTGTACCCTAAACGCGTGGTAAATATGGAAACTATCGGCAGCGTTGCAACGCTAGGGACAGCGTTGCAACGCTGCTACCTCAACGCGCGCTCCTTATCGAAGTAGCGTTGCGACGCTGCAAGGCAGCGTTGCAACGCTACCTGCACGGTCTTCATAAGCGTCTTCTTATCGAGATGGCGTTACAACGCCAGAAGGCAGCGTTGCAACGCCATCGCCTGTAGCCTTCAAAGCCTCTTGGCTGCGCGTTCGGCGTTGCAACGCTCTATATGGCGTTGCAACGCCATCACCTCGGGTCTTAAAGCTTGGTTTGGTTTTCTCTCTTCCATTTGATGTTATATTTAGCTCCAAATAGCCTTGTTTTGATCCCGAGTGATCCAAATTGTCTCCAATAGCTCCGTTTAAGCTCTTAACCTGAAATTGAATAAATTAACCACGTAAAAGCCCTGAAATCATCATAAAACTAGCAATAATTAAGCCTAAGGATAGCACACTTTGTGTGCTATCACTTGCTTTTGTTGGACTGGAGTCCTTTTTTGTAGCTAGTTCTTGGACTCCCTTTTTGTTGGGTTTGTATTTAGTATGCCCTTGTTTCTTTCATCTTTCTCAATGAAAGTTTGGTTTCTTACCAGATTTTTTTTCTATGATATTTGGTATAGGTTAAATCTGTCTAAAATGAAAAAAAGAACTATGGTGTAAAATTGATAATTGTGTACTCTTTAATTTCTTAAATTATTACATGCGAGCTTTGTGTATGTTTCTTTGTTGACCTGTATTGACAACGATGATTTGGTTTAACAGTCAGAGGACAAGATGTAATCCTTAGCGTCATGGTCATGTATAGTAATGATAGAATATAGAAAGAGGGAAATTTTGGTCAAATAAATTTTGAAAACACTCCAATTGGCACACAGATGATGGCAGGAGAATATTTTACAAACGAAATTGTCAATTTTATAAAAAAAATTGTCAAATTTATTAGAAAACTTGAAAGGATGCAAAATTCCCCCAAAGAAAGTTTTTATCAAGATTATTCTAACATATGGACCGTTTTTCACGTGAAGAATAGTTATTAGTGTTGTGGTACCAAGCTTAAGTGGCTATCAATTTTAATTTATTTGGTTCGTGCATCTCATGCTATTATGGTACTTTCTTCTGTCATCCTGTCTTAGACATTCTTCTTAGAATTTTGATGCTTATTTATTTTCGTCTTTTCCTTCCCACAATGCCAAATGTATCCAAAGTCTACAATGGAGTGTAAATCAGGTTCAGGGGAGGGGAGTCTTTTTGTGGTGAGCTGGTGTGTGTGCTATTCTTTGGGAGCTTTGGGGGAGAGAAATAATAGAATCTTTTGAGGGGTTGATCGTTCCTCTTCTGATATTTGGACCCTTAGTAGATTCTATGTTTCTCTTTGGGCCTCGGTGGTCGAGCCTTTTTGTAATTATCCTTTAGATTTTATTCTGCTTGGGTGGAGCACCTTGTTGTAAGCTCCCCTTGTTTTTTGTGGGCTTGTTTTTGTATGCCCCTGTATTCTTTCATTTTTTCTCAATGAAAGCTTGATTTTTCATTAAAAAAAAAAAAAAAAAACAATGGAGTGTAAATCAAAGTTATGTTACTCGTGAATATGACATTGGTGGAAGTGCCTGTTGACTCATCCTGTCTTAGAAGTTTGATAATCTAAGCAACTTTTGCTTTGTCCACGCAGGCTTTTATGAGACTAGGATTGCTTATTATGCATGGAGGGGTGCTAATGGATATCGCTTCGCTTCTATTCCCGATTACTAGGTGTTCCTATCTCGATGGTGTATGCTTATCTCATCTCTCTTTCAATGTAAAACTATCATATAAAGTCAGAGAATGGTTTGTACAAAATCACGCCTCTTGAGTTTGTAATATATTCATATTTTATTCTTGTTCATAGCTGGTTAGAAAAACGATAAATTATGTAGCTCTAATTTATTAACTCGATAAGTCTTGTAGCTAAAACTCAAACTTTAGCCTGCAAATGCTTCGAGTGAGATTATTACATGACTAACTGCATGGAGCAAGGTTGTTTAGGTAGGATTTGAACTTTTTATGGATTACATTGTGCAGAAGAGAACATTAAGACCAGACCTAGATTGTTTCATACCGAAGCACTAGACAAATCTTAAGTTGCAGCTGATGCTTTTGTGAATGCTTTTCAAAAAGTCAGATGCAGATTGAAGAATTGTTTTAGCACATTGTAATTTTTGTTACAAATGGACGAATTAAAAAGATTTGTCCACTTTGTCTTTAAATGTCTTGATGGGATCCCTATAATCCCACAACCTTATATTACAACATTTAATCATTTTGTTTTCTAGGAAGCTGTTGAATGCTGGACGGGGAAGCCCAAGCAAACTAGAAAGAAAAAAAAAAAAACCCTCTTCTGTGCGAATTAAATTCTTTTTGTAACAAGAGAGAGAGTAGGCTATGTTTGGTATATGTGTATATTCTTTGCTTATGCAAGAAGGGGACAATTAT

mRNA sequence

GTGCCAAAAAAAATTGCTTAGAAAGGCCAAGATTCTAAAAGGCCTGGGCCCAACTCGAAGTCCAAGATCCATAAATCAAGTCAACCAGTTAAAAAAAAAAAGAAAAAAAAACAGTCACCGTCAAATCGAAGAAACGACGGGCTTTCTCAACAGTCTCCGGTGGCTTGATTTAGTTGAAATTTGAAGACTCCATTCTTGATAATCGCTGTCATGGCATCTAGACGGAATGTTCGTTACAGTTCCCTTGCCACTGATGATAACGATCTTGATTATGATGGAAGTCAATATGACCCTCGCTTTTACTATACACCAAAAGCTTTTGACAAAATTCCGTGGAAGTCTATTGCTCTGGCTATCTTCTTGTTACTTCTTGGATCATTGCTTCTCTTTCTTTCGTACTTCGTATTAACTGGTCACATGGCAGGAGAGAAATCACAAGCTTATGGTCTTTTAGCATTGGGGTTTCTTACCTTCCTCCCAGGCTTTTATGAGACTAGGATTGCTTATTATGCATGGAGGGGTGCTAATGGATATCGCTTCGCTTCTATTCCCGATTACTAGGTGTTCCTATCTCGATGGTGTATGCTTATCTCATCTCTCTTTCAATGTAAAACTATCATATAAAGTCAGAGAATGGTTTGTACAAAATCACGCCTCTTGAGTTTGTAATATATTCATATTTTATTCTTGTTCATAGCTGGTTAGAAAAACGATAAATTATGTAGCTCTAATTTATTAACTCGATAAGTCTTGTAGCTAAAACTCAAACTTTAGCCTGCAAATGCTTCGAGTGAGATTATTACATGACTAACTGCATGGAGCAAGGTTGTTTAGGTAGGATTTGAACTTTTTATGGATTACATTGTGCAGAAGAGAACATTAAGACCAGACCTAGATTGTTTCATACCGAAGCACTAGACAAATCTTAAGTTGCAGCTGATGCTTTTGTGAATGCTTTTCAAAAAGTCAGATGCAGATTGAAGAATTGTTTTAGCACATTGTAATTTTTGTTACAAATGGACGAATTAAAAAGATTTGTCCACTTTGTCTTTAAATGTCTTGATGGGATCCCTATAATCCCACAACCTTATATTACAACATTTAATCATTTTGTTTTCTAGGAAGCTGTTGAATGCTGGACGGGGAAGCCCAAGCAAACTAGAAAGAAAAAAAAAAAAACCCTCTTCTGTGCGAATTAAATTCTTTTTGTAACAAGAGAGAGAGTAGGCTATGTTTGGTATATGTGTATATTCTTTGCTTATGCAAGAAGGGGACAATTAT

Coding sequence (CDS)

ATGGCATCTAGACGGAATGTTCGTTACAGTTCCCTTGCCACTGATGATAACGATCTTGATTATGATGGAAGTCAATATGACCCTCGCTTTTACTATACACCAAAAGCTTTTGACAAAATTCCGTGGAAGTCTATTGCTCTGGCTATCTTCTTGTTACTTCTTGGATCATTGCTTCTCTTTCTTTCGTACTTCGTATTAACTGGTCACATGGCAGGAGAGAAATCACAAGCTTATGGTCTTTTAGCATTGGGGTTTCTTACCTTCCTCCCAGGCTTTTATGAGACTAGGATTGCTTATTATGCATGGAGGGGTGCTAATGGATATCGCTTCGCTTCTATTCCCGATTACTAG

Protein sequence

MASRRNVRYSSLATDDNDLDYDGSQYDPRFYYTPKAFDKIPWKSIALAIFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY

Homology

[Close]

BLAST of Tan0014039.3 vs. ExPASy Swiss-Prot
Match: Q5ZLH4 (Transmembrane protein 230 OS=Gallus gallus OX=9031 GN=TMEM230 PE=2 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 4.0e-14
Identity = 46/112 (41.07%), Postives = 67/112 (59.82%), Query Frame = 0


Query: 7   VRYSSLA-TDDNDLDYDGSQYDPRFYYTPKAFDKIPWKSIALAIFLLLLGSLLLFLSYFV 66
           V+YS LA TDD  +D    +  P          KIP+K+IALA+ L ++G+ L+ +   +
Sbjct: 17  VKYSKLASTDDGYIDLQFKKSPP----------KIPYKAIALAVVLFMIGTFLIIIGALL 76

Query: 67  LTGHMA-GEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY 117
           L G+++ G   +A  +L +G L FLPGFY  RIAYYA +G  GY +  IPD+
Sbjct: 77  LAGYISKGGTDRAIPVLIIGILVFLPGFYHLRIAYYASKGYRGYSYDDIPDF 118

[Close]

BLAST of Tan0014039.3 vs. ExPASy Swiss-Prot
Match: Q96A57 (Transmembrane protein 230 OS=Homo sapiens OX=9606 GN=TMEM230 PE=1 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 6.9e-14
Identity = 46/111 (41.44%), Postives = 68/111 (61.26%), Query Frame = 0


Query: 7   VRYSSLATDDNDLDYDGSQYDPRFYYTPKAFDKIPWKSIALAIFLLLLGSLLLFLSYFVL 66
           V+YS L++ D+         D +F  TP    KIP+K+IALA  L L+G+ L+ +   +L
Sbjct: 17  VKYSRLSSTDD------GYIDLQFKKTP---PKIPYKAIALATVLFLIGAFLIIIGSLLL 76

Query: 67  TGHMA-GEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY 117
           +G+++ G   +A  +L +G L FLPGFY  RIAYYA +G  GY +  IPD+
Sbjct: 77  SGYISKGGADRAVPVLIIGILVFLPGFYHLRIAYYASKGYRGYSYDDIPDF 118

[Close]

BLAST of Tan0014039.3 vs. ExPASy Swiss-Prot
Match: Q8CIB6 (Transmembrane protein 230 OS=Mus musculus OX=10090 GN=Tmem230 PE=1 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 6.9e-14
Identity = 47/112 (41.96%), Postives = 67/112 (59.82%), Query Frame = 0


Query: 7   VRYSSLA-TDDNDLDYDGSQYDPRFYYTPKAFDKIPWKSIALAIFLLLLGSLLLFLSYFV 66
           V+YS LA TDD  +D    +  P          KIP+K+IALA  L L+G+ L+ +   +
Sbjct: 17  VKYSRLASTDDGYIDLQFKKSPP----------KIPYKAIALATVLFLIGTFLIIIGSLL 76

Query: 67  LTGHMA-GEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY 117
           L+G+++ G   +A  +L +G L FLPGFY  RIAYYA +G  GY +  IPD+
Sbjct: 77  LSGYISKGGADRAVPVLIIGILVFLPGFYHLRIAYYASKGYRGYSYDDIPDF 118

[Close]

BLAST of Tan0014039.3 vs. ExPASy Swiss-Prot
Match: Q5R8X3 (Transmembrane protein 230 OS=Pongo abelii OX=9601 GN=TMEM230 PE=2 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.2e-13
Identity = 46/111 (41.44%), Postives = 68/111 (61.26%), Query Frame = 0


Query: 7   VRYSSLATDDNDLDYDGSQYDPRFYYTPKAFDKIPWKSIALAIFLLLLGSLLLFLSYFVL 66
           V+YS L++ D+         D +F  TP    KIP+K+IALA  L L+G+ L+ +   +L
Sbjct: 17  VKYSRLSSTDD------GYIDLQFKKTP---PKIPYKAIALATGLFLIGAFLIIIGSLLL 76

Query: 67  TGHMA-GEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY 117
           +G+++ G   +A  +L +G L FLPGFY  RIAYYA +G  GY +  IPD+
Sbjct: 77  SGYISKGGADRAIPVLIIGILVFLPGFYHLRIAYYASKGYRGYSYDDIPDF 118

[Close]

BLAST of Tan0014039.3 vs. ExPASy Swiss-Prot
Match: Q5BJP5 (Transmembrane protein 230 OS=Rattus norvegicus OX=10116 GN=Tmem230 PE=1 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.5e-13
Identity = 46/112 (41.07%), Postives = 67/112 (59.82%), Query Frame = 0


Query: 7   VRYSSL-ATDDNDLDYDGSQYDPRFYYTPKAFDKIPWKSIALAIFLLLLGSLLLFLSYFV 66
           V+YS L +TDD  +D    +  P          KIP+K+IALA  L L+G+ L+ +   +
Sbjct: 17  VKYSRLSSTDDGYIDLQFKKSPP----------KIPYKAIALATVLFLIGTFLIIIGSLL 76

Query: 67  LTGHMA-GEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY 117
           L+G+++ G   +A  +L +G L FLPGFY  RIAYYA +G  GY +  IPD+
Sbjct: 77  LSGYISKGGADRAVPVLIIGILVFLPGFYHLRIAYYASKGYRGYSYDDIPDF 118

[Close]

BLAST of Tan0014039.3 vs. NCBI nr
Match: XP_023521905.1 (transmembrane protein 230-like [Cucurbita pepo subsp. pepo] >XP_023521962.1 transmembrane protein 230-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 232.6 bits (592), Expect = 1.7e-57
Identity = 113/116 (97.41%), Postives = 115/116 (99.14%), Query Frame = 0


Query: 1   MASRRNVRYSSLATDDNDLDYDGSQYDPRFYYTPKAFDKIPWKSIALAIFLLLLGSLLLF 60
           MASRRNVRYSSLA DDNDLDY+GSQYDPRFYYTPKAFDKIPWKSIALA+FLLLLGSLLLF
Sbjct: 1   MASRRNVRYSSLAADDNDLDYEGSQYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLF 60

Query: 61  LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY 117
           LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY
Sbjct: 61  LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY 116

[Close]

BLAST of Tan0014039.3 vs. NCBI nr
Match: XP_022961740.1 (transmembrane protein 230-like [Cucurbita moschata] >XP_022961747.1 transmembrane protein 230-like [Cucurbita moschata] >KAG6602515.1 Transmembrane protein 230, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033189.1 Transmembrane protein-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 231.1 bits (588), Expect = 4.9e-57
Identity = 112/116 (96.55%), Postives = 114/116 (98.28%), Query Frame = 0


Query: 1   MASRRNVRYSSLATDDNDLDYDGSQYDPRFYYTPKAFDKIPWKSIALAIFLLLLGSLLLF 60
           MASRRNVRYSSLA DDNDLDY+GSQYDPRFYYTPKAFDKIPWKSIALA+FLLLLGS LLF
Sbjct: 1   MASRRNVRYSSLAADDNDLDYEGSQYDPRFYYTPKAFDKIPWKSIALALFLLLLGSFLLF 60

Query: 61  LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY 117
           LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY
Sbjct: 61  LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY 116

[Close]

BLAST of Tan0014039.3 vs. NCBI nr
Match: XP_022990725.1 (transmembrane protein 230-like [Cucurbita maxima] >XP_022990726.1 transmembrane protein 230-like [Cucurbita maxima] >XP_022990727.1 transmembrane protein 230-like [Cucurbita maxima])

HSP 1 Score: 227.6 bits (579), Expect = 5.4e-56
Identity = 111/116 (95.69%), Postives = 114/116 (98.28%), Query Frame = 0


Query: 1   MASRRNVRYSSLATDDNDLDYDGSQYDPRFYYTPKAFDKIPWKSIALAIFLLLLGSLLLF 60
           MASRR+VRYSSLA DDNDLDY+GSQYDPRFYYTPKAFDKIPWKSIALA+FLLLLGSLLLF
Sbjct: 1   MASRRSVRYSSLAADDNDLDYEGSQYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLF 60

Query: 61  LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY 117
           LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGY FASIPDY
Sbjct: 61  LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYCFASIPDY 116

[Close]

BLAST of Tan0014039.3 vs. NCBI nr
Match: XP_022939930.1 (transmembrane protein 230-like [Cucurbita moschata] >XP_022939931.1 transmembrane protein 230-like [Cucurbita moschata] >XP_022993688.1 transmembrane protein 230-like [Cucurbita maxima] >XP_022993689.1 transmembrane protein 230-like [Cucurbita maxima] >XP_022993690.1 transmembrane protein 230-like [Cucurbita maxima] >XP_023549544.1 transmembrane protein 230-like [Cucurbita pepo subsp. pepo] >XP_023549545.1 transmembrane protein 230-like [Cucurbita pepo subsp. pepo] >KAG6578563.1 Transmembrane protein 230, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 226.9 bits (577), Expect = 9.2e-56
Identity = 110/116 (94.83%), Postives = 113/116 (97.41%), Query Frame = 0


Query: 1   MASRRNVRYSSLATDDNDLDYDGSQYDPRFYYTPKAFDKIPWKSIALAIFLLLLGSLLLF 60
           MASRRNVRYSSL+TDDNDLD DG+Q+DPRFYYTPKAFDKIPWKSIALAIFLL LGS LLF
Sbjct: 1   MASRRNVRYSSLSTDDNDLDLDGNQFDPRFYYTPKAFDKIPWKSIALAIFLLFLGSFLLF 60

Query: 61  LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY 117
           LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY
Sbjct: 61  LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY 116

[Close]

BLAST of Tan0014039.3 vs. NCBI nr
Match: XP_008459349.1 (PREDICTED: transmembrane protein 230 [Cucumis melo])

HSP 1 Score: 225.7 bits (574), Expect = 2.0e-55
Identity = 109/116 (93.97%), Postives = 115/116 (99.14%), Query Frame = 0


Query: 1   MASRRNVRYSSLATDDNDLDYDGSQYDPRFYYTPKAFDKIPWKSIALAIFLLLLGSLLLF 60
           MASRRN+RYSSLA+DDND+D +GS++DPRFYYTPKAFDKIPWKSIALAIFLLLLGSLLLF
Sbjct: 1   MASRRNIRYSSLASDDNDVDSEGSRFDPRFYYTPKAFDKIPWKSIALAIFLLLLGSLLLF 60

Query: 61  LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY 117
           LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY
Sbjct: 61  LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY 116

[Close]

BLAST of Tan0014039.3 vs. ExPASy TrEMBL
Match: A0A6J1HAY7 (Transmembrane protein 230 OS=Cucurbita moschata OX=3662 GN=LOC111462418 PE=3 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 2.4e-57
Identity = 112/116 (96.55%), Postives = 114/116 (98.28%), Query Frame = 0


Query: 1   MASRRNVRYSSLATDDNDLDYDGSQYDPRFYYTPKAFDKIPWKSIALAIFLLLLGSLLLF 60
           MASRRNVRYSSLA DDNDLDY+GSQYDPRFYYTPKAFDKIPWKSIALA+FLLLLGS LLF
Sbjct: 1   MASRRNVRYSSLAADDNDLDYEGSQYDPRFYYTPKAFDKIPWKSIALALFLLLLGSFLLF 60

Query: 61  LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY 117
           LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY
Sbjct: 61  LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY 116

[Close]

BLAST of Tan0014039.3 vs. ExPASy TrEMBL
Match: A0A6J1JQW3 (Transmembrane protein 230 OS=Cucurbita maxima OX=3661 GN=LOC111487526 PE=3 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 2.6e-56
Identity = 111/116 (95.69%), Postives = 114/116 (98.28%), Query Frame = 0


Query: 1   MASRRNVRYSSLATDDNDLDYDGSQYDPRFYYTPKAFDKIPWKSIALAIFLLLLGSLLLF 60
           MASRR+VRYSSLA DDNDLDY+GSQYDPRFYYTPKAFDKIPWKSIALA+FLLLLGSLLLF
Sbjct: 1   MASRRSVRYSSLAADDNDLDYEGSQYDPRFYYTPKAFDKIPWKSIALALFLLLLGSLLLF 60

Query: 61  LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY 117
           LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGY FASIPDY
Sbjct: 61  LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYCFASIPDY 116

[Close]

BLAST of Tan0014039.3 vs. ExPASy TrEMBL
Match: A0A6J1K312 (Transmembrane protein 230 OS=Cucurbita maxima OX=3661 GN=LOC111489607 PE=3 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 4.4e-56
Identity = 110/116 (94.83%), Postives = 113/116 (97.41%), Query Frame = 0


Query: 1   MASRRNVRYSSLATDDNDLDYDGSQYDPRFYYTPKAFDKIPWKSIALAIFLLLLGSLLLF 60
           MASRRNVRYSSL+TDDNDLD DG+Q+DPRFYYTPKAFDKIPWKSIALAIFLL LGS LLF
Sbjct: 1   MASRRNVRYSSLSTDDNDLDLDGNQFDPRFYYTPKAFDKIPWKSIALAIFLLFLGSFLLF 60

Query: 61  LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY 117
           LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY
Sbjct: 61  LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY 116

[Close]

BLAST of Tan0014039.3 vs. ExPASy TrEMBL
Match: A0A6J1FP54 (Transmembrane protein 230 OS=Cucurbita moschata OX=3662 GN=LOC111445649 PE=3 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 4.4e-56
Identity = 110/116 (94.83%), Postives = 113/116 (97.41%), Query Frame = 0


Query: 1   MASRRNVRYSSLATDDNDLDYDGSQYDPRFYYTPKAFDKIPWKSIALAIFLLLLGSLLLF 60
           MASRRNVRYSSL+TDDNDLD DG+Q+DPRFYYTPKAFDKIPWKSIALAIFLL LGS LLF
Sbjct: 1   MASRRNVRYSSLSTDDNDLDLDGNQFDPRFYYTPKAFDKIPWKSIALAIFLLFLGSFLLF 60

Query: 61  LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY 117
           LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY
Sbjct: 61  LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY 116

[Close]

BLAST of Tan0014039.3 vs. ExPASy TrEMBL
Match: A0A1S3C9X7 (Transmembrane protein 230 OS=Cucumis melo OX=3656 GN=LOC103498508 PE=3 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 9.9e-56
Identity = 109/116 (93.97%), Postives = 115/116 (99.14%), Query Frame = 0


Query: 1   MASRRNVRYSSLATDDNDLDYDGSQYDPRFYYTPKAFDKIPWKSIALAIFLLLLGSLLLF 60
           MASRRN+RYSSLA+DDND+D +GS++DPRFYYTPKAFDKIPWKSIALAIFLLLLGSLLLF
Sbjct: 1   MASRRNIRYSSLASDDNDVDSEGSRFDPRFYYTPKAFDKIPWKSIALAIFLLLLGSLLLF 60

Query: 61  LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY 117
           LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY
Sbjct: 61  LSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPDY 116

[Close]

BLAST of Tan0014039.3 vs. TAIR 10
Match: AT3G29170.1 (Eukaryotic protein of unknown function (DUF872) )

HSP 1 Score: 164.1 bits (414), Expect = 6.8e-41
Identity = 79/121 (65.29%), Postives = 94/121 (77.69%), Query Frame = 0


Query: 1   MASRRNVRYSSLATDDNDLDY-----DGSQYDPRFYYTPKAFDKIPWKSIALAIFLLLLG 60
           MASRR+VRY+ L  D++D  Y     +   +DPRF Y+PKAFD++PWKSIALA+FLL LG
Sbjct: 1   MASRRSVRYAQLPGDEDDEGYGNGVGERRDFDPRFDYSPKAFDRVPWKSIALAVFLLFLG 60

Query: 61  SLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYYAWRGANGYRFASIPD 117
            LLL LS+F+  GHM G+ SQ Y LL LG LTFLPGFYETRIAYY+WRGA GYRFA+IP 
Sbjct: 61  CLLLLLSFFIFIGHMEGDSSQGYALLVLGILTFLPGFYETRIAYYSWRGAEGYRFAAIPS 120

[Close]

BLAST of Tan0014039.3 vs. TAIR 10
Match: AT2G19350.1 (Eukaryotic protein of unknown function (DUF872) )

HSP 1 Score: 67.4 bits (163), Expect = 8.7e-12
Identity = 32/74 (43.24%), Postives = 49/74 (66.22%), Query Frame = 0


Query: 41  PWKSIALAIFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYY 100
           P K I+LA+ LL+ G+L + L +F+    + G++      + LG L F+PGFY TRIAYY
Sbjct: 28  PVKEISLAVGLLVFGTLGIVLGFFMAYNRVGGDRGHGIFFIVLGCLLFIPGFYYTRIAYY 87

Query: 101 AWRGANGYRFASIP 115
           A++G  G+ F++IP
Sbjct: 88  AYKGYKGFSFSNIP 101

[Close]

BLAST of Tan0014039.3 vs. TAIR 10
Match: AT4G29850.1 (Eukaryotic protein of unknown function (DUF872) )

HSP 1 Score: 66.6 bits (161), Expect = 1.5e-11
Identity = 32/74 (43.24%), Postives = 48/74 (64.86%), Query Frame = 0


Query: 41  PWKSIALAIFLLLLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGFLTFLPGFYETRIAYY 100
           P K IALA+ LL+ G+L +   +F+    + G++      + LG L F+PGFY TRIAYY
Sbjct: 28  PVKEIALAVALLVFGTLGIVSGFFMAYNRVGGDRGHGIFFIVLGCLLFIPGFYYTRIAYY 87

Query: 101 AWRGANGYRFASIP 115
           A++G  G+ F++IP
Sbjct: 88  AYKGYKGFSFSNIP 101

The following BLAST results are available for this feature:

BLAST of Tan0014039.3 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5ZLH4	4.0e-14	41.07	Transmembrane protein 230 OS=Gallus gallus OX=9031 GN=TMEM230 PE=2 SV=1	[more]
Q96A57	6.9e-14	41.44	Transmembrane protein 230 OS=Homo sapiens OX=9606 GN=TMEM230 PE=1 SV=1	[more]
Q8CIB6	6.9e-14	41.96	Transmembrane protein 230 OS=Mus musculus OX=10090 GN=Tmem230 PE=1 SV=1	[more]
Q5R8X3	1.2e-13	41.44	Transmembrane protein 230 OS=Pongo abelii OX=9601 GN=TMEM230 PE=2 SV=1	[more]
Q5BJP5	1.5e-13	41.07	Transmembrane protein 230 OS=Rattus norvegicus OX=10116 GN=Tmem230 PE=1 SV=1	[more]

BLAST of Tan0014039.3 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023521905.1	1.7e-57	97.41	transmembrane protein 230-like [Cucurbita pepo subsp. pepo] >XP_023521962.1 tran...	[more]
XP_022961740.1	4.9e-57	96.55	transmembrane protein 230-like [Cucurbita moschata] >XP_022961747.1 transmembran...	[more]
XP_022990725.1	5.4e-56	95.69	transmembrane protein 230-like [Cucurbita maxima] >XP_022990726.1 transmembrane ...	[more]
XP_022939930.1	9.2e-56	94.83	transmembrane protein 230-like [Cucurbita moschata] >XP_022939931.1 transmembran...	[more]
XP_008459349.1	2.0e-55	93.97	PREDICTED: transmembrane protein 230 [Cucumis melo]	[more]

BLAST of Tan0014039.3 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HAY7	2.4e-57	96.55	Transmembrane protein 230 OS=Cucurbita moschata OX=3662 GN=LOC111462418 PE=3 SV=...	[more]
A0A6J1JQW3	2.6e-56	95.69	Transmembrane protein 230 OS=Cucurbita maxima OX=3661 GN=LOC111487526 PE=3 SV=1	[more]
A0A6J1K312	4.4e-56	94.83	Transmembrane protein 230 OS=Cucurbita maxima OX=3661 GN=LOC111489607 PE=3 SV=1	[more]
A0A6J1FP54	4.4e-56	94.83	Transmembrane protein 230 OS=Cucurbita moschata OX=3662 GN=LOC111445649 PE=3 SV=...	[more]
A0A1S3C9X7	9.9e-56	93.97	Transmembrane protein 230 OS=Cucumis melo OX=3656 GN=LOC103498508 PE=3 SV=1	[more]

BLAST of Tan0014039.3 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G29170.1	6.8e-41	65.29	Eukaryotic protein of unknown function (DUF872)	[more]
AT2G19350.1	8.7e-12	43.24	Eukaryotic protein of unknown function (DUF872)	[more]
AT4G29850.1	1.5e-11	43.24	Eukaryotic protein of unknown function (DUF872)	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008590	Transmembrane protein 230/134	PFAM	PF05915	DUF872	coord: 40..116 e-value: 1.3E-25 score: 89.8
None	No IPR available	PANTHER	PTHR15664:SF0	TRANSMEMBRANE PROTEIN 230	coord: 1..116
IPR044234	Transmembrane protein 230	PANTHER	PTHR15664	C20ORF30 PROTEIN	coord: 1..116

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Tan0014039	Tan0014039	gene

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0014039.3-three_prime_utr	Tan0014039.3-three_prime_utr-LG11:30082621..30083340	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0014039.3-exon	Tan0014039.3-exon-LG11:30082621..30083420	exon
Tan0014039.3-exon	Tan0014039.3-exon-LG11:30087569..30087890	exon
Tan0014039.3-exon	Tan0014039.3-exon-LG11:30088508..30088666	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0014039.3-cds	Tan0014039.3-cds-LG11:30083341..30083420	CDS
Tan0014039.3-cds	Tan0014039.3-cds-LG11:30087569..30087839	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0014039.3-five_prime_utr	Tan0014039.3-five_prime_utr-LG11:30087840..30087890	five_prime_UTR
Tan0014039.3-five_prime_utr	Tan0014039.3-five_prime_utr-LG11:30088508..30088666	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Tan0014039.3	Tan0014039.3-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005776	autophagosome
cellular_component	GO:0005768	endosome
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0016021	integral component of membrane