Tan0013939.2 (mRNA) Snake gourd v1

Overview


Name	Tan0013939.2
Type	mRNA
Organism	Trichosanthes anguina (Snake gourd v1)
Description	DNA polymerase zeta processivity subunit
Location	LG05: 4568283 .. 4572026 (+)
Sequence length	2324
RNA-Seq Expression	Tan0013939.2
Synteny	Tan0013939.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTGGAACTCGACTCCAACACAGAAAAGCCCGCAGCACTTACAGATTTGAATCGGTACAGTCACATTTCTACCCCAAGTTTCCATCTCTAGATATCAGAGCAGGAGCTTTATGGAACACGACCCATATTTTGTAAGTTTCAACACTTGCTTGTTTTCTTCCCCATCCCAAAAGAACAAAGAAATCGTTCAAGTCTCCTTCGGTGCCATTTGTTTCATCGTTAATTTTGTGTTAGATTGGCTCTACCTAAGAATTTTTTGCTCGGATTTTGTTGGGTCATTTTTGTTTTTTGGGTTTGTATTCGTTATGACTCATGTGTCTGTTCCCCTAAATTGGAAAAGGATTTAGCTTCCAGGACAGTTATCTGGTTTACTCTGTGAGTTTACAAGCTGTTAAGAGATTGGCAATACATGGAAGATGCAAATGAAAGAATTAAGAAGCACTGGAAGTACGATGAACAATTGAGCCAGTGTGAATTGTCGTTCCTTTGGCTACGATCACGTTGATATTCTCATAATATCTGTTTAAAACATCCTAATGGACACTGGTGCTGCAGCAAACCGTTGCTCTTAGGATAATTGTGTAACAGTTGGATTTTTCTGAAATAGAGAATGAAATGACAACATTTGTCCAAGTGAATTGAGTTAAGAGTAAACCTGTTGACAACTACAGAAAATGGAAAGATAATTCTGTATCTCACATTAATATGTCGAACACTGATGCCTATACTGGGCAATGTTCAAAACTGAACTTGGACAAACCAATTAGATAACTAAAACAGTTGAGTTGTTAACTAAGCATCTGGAATGTTATACCGTCTTTGATATTCATGTAACTTGCTTCAAGATAATGATTGTCTTTGTTATTTAGTGCAGTCAAATGGAGAATGCTCAAGATCGTTTATGTAATTGGCTTAGATGTGTATGTTGAGAGTTTGAACTTCCTAGTGTAAAGACCATATCGCTCCACTTTATCTAGCCAATGGACTCAAGAGATAATAAAGTAACGCCTCAAGGTTTTCCATTTTATCTATATTTGTTCCAGTCCCCCAGTTACTTTAGTTTCCTGACGATAAGAGTAAAAGTAACTCTGCTATTGAACTAATTATTTATGCAGGTGAAACGGTTCAGATTCTAGTTGAATTCTTGGAGGTGGCCATTACATCAATTGTCTTCCTCAAAGGCATTTACCCTTCTGGTGCAATTCTTTCTTTAATCTATTTGTTCTAAGATCCTATTATCTGCTGTATTTCTAGGAAAGGATGGTGATTGCATGGAGTTTATTTTACTGTATTTCTGCCAAGTAATTAAGAAACATTGGTTTATGGGTGTGTTACTTTACAAAGGAAACCTAAATAACTTGAAATATTATTTGGTCACCTGTAGATTGGTCGTTTACACCCCCACCTCTTAACCACAGGGGAAAAGATACCAGTTTAGTCAATATTAATGGATTGAATAACAGAAAGAAAAGATAGGAATTGTGACTAATTATTGGTGGGGTTTATGTGAAGGTGCTTTTGAAAGAAGAAGGTACATGAATGCGGTTGTGCAGAGGGCTCGTCATCCCGAGCTGCAGGATTACATCCACTCAACTGTTTCTGGGCTACTACCCTTCATTCAAAAGGTTGACCATTCACTTGCATTCTTGTTCTATCTGCTAAAGATGGTCCTAAATTTCTTGTCTACCCATGTGCCTTTTGGTGAAACCAGGTCCTTTTTGTCAAGGACAATCTCAAACAGTGGATTGTTTCTTTCACATGGCTACTTGCCTGGTTTTAGGAAGAGTGGGAGTTGTTTATGATTGGAACCAATGAGAAGGAAACTATTGGGTTCTGTGGTTGTAAGTATTAGATGTGAAGATTAAATTTGGGAGACCTGGTCTTAAGGCTACAAGCTATGAATGGGTTGATTATTTACTGGTATTCTCACAATATAAGACAATTTGTGTTTGCAAATGCAACCCCGTTCAATGAATATGGAACTGAGAAAAGTTCATCAAAAACATAAAGTAGGTCTATGTGATGCAGTTGCAATATGGCATGTCCAACTCGATTGATCTCAGAAAAATAGTAGTATTTTTAATAATTATAGAACTTTGATTAATTAACTACTTCTTCCTTAGGGCATATCCAGCAGTATCTGATTGTTGGATTTCAGCCTTAATTTGAGAGTCTGAGCATAAAGTGTATGAAGTCCTGCATAAGTTCCATTATTACTTTTACATTCAGATCTCCTTGTTTTGTTATCTTATGTTAGGTATTTGTCAAGTTTTGACATTCTTACTACAGTATTTGTCAAGTCTCTCTCTTGATGGGCAATGCGTTATTGTCTTCCATTTCTGAGCAGATCTATTTTATTATCCAGAAACATGCAACTATGGAACTTCATAAGCCCAAAAAAAAAAAAGAGAAATAGCAATAAATGTCGTAAATAATTCTTCATGTAACTTACTGAGTAGACTAAACATGAGTTTCCTCTACAACTAGGGGCTGGTGGAGAGAGTAGCAGTTATATTTTTCAACGGTGAAAATATCCAAGTGGAGAGATTTGTGTTCAAGCTCATGGTGAACCAGTCTTATGAAAGGAAGGTCGAGAATTCCGACCTGGAGTTCGCCTTAAGATCATTCTTGATCAAGCTCTCTTTCTCAGAACCTCTAACCATGGCTCTTCCGCCTGGTGAGACCTTTATTTTAGTTCACTAATCTTAGCTGTTTTCATACTTCAATCCTTAGAAGTCTCCATCTGTTGCATTTTGGTTAATTCTGTCATAAAAGATTGGAGGAATTTCTATAAGTTTTATATATCTTTGTACAACAGATTGCAAATGGGAAATAACTGCCTACTTCCAAACCCTTCCAACTTCCAGTACAAGTAAAGATGCAGAGTTATGGATCCCAACGGATACCAAGCAATGGCAACAACCACCAGTAATCACCCCCATCAGGTCCATGAACAGCCAACCTCTGAGTTTGCAGTTATATCTAGAACATCCTAGCTTATCTGAGCCAAAACCTTGTGAATAATAAATGTGCATTAATGTGAAAAGATTTTGCTTAGATTGTTCAAATGGAAAGTTTCTTGAGCTTGTATTTTAGATCTTCTGTACACTGTCCATCTCCATAGTATGTATAAACTCATACAACAATTATTCCTTTACCACATCAGTTTAGAAGCCTGAAAGTGTTCTGATACTGGCTTATTGTCAAGTTTCAATTTTGCAGCTAAAATACTTTCTTTTTCAGGTTTGGATGAAGGGTATGATAGCAAATACTATTAGTCTACTACTGTTGAGTGATACTGCATTCAGAAGAGATCTTACATCTTAAATTACATGACATGAACTTGTATTACAGGTCAGAGATTTTGATTTGAAGATTTAAAAACATAGGTCAGAAAGAAAGAAACACAGAAGGCAGGCATCGTGTATGAATGGTTGACAAGGTTGGGTCCATTATTAGGCAGAAGTTGGAGATAGATCTGAAGCAGGAAAAGGAAAAGGAAAAGGAAATGGAAAAGGGTGGTTGTTTGGTTTGGTAGATTAATGAGAGACATCATAGTTGGGGGTTTGAGGGGTGGATCCCAGGTTGTCAGGCCTGCTACTGTGGCTGTCTTCATTCATGATGGCAATGACATAACTTCCCACTCTCCTTTTTTTAGCTGAGATGTAATGAGTGAAAATCAGAGATGAATATGAATTCTCTGAAACCTTTCAGACCCTCACCACAAAATCAACTAGATGCTAG

mRNA sequence

ATTGGAACTCGACTCCAACACAGAAAAGCCCGCAGCACTTACAGATTTGAATCGGTACAGTCACATTTCTACCCCAAGTTTCCATCTCTAGATATCAGAGCAGGAGCTTTATGGAACACGACCCATATTTTGTAAGTTTCAACACTTGCTTGTTTTCTTCCCCATCCCAAAAGAACAAAGAAATCGTTCAAGTCTCCTTCGGTGCCATTTGTTTCATCGTTAATTTTGTGTTAGATTGGCTCTACCTAAGAATTTTTTGCTCGGATTTTGTTGGGTCATTTTTGTTTTTTGGGTTTGTATTCGTTATGACTCATGTGTCTGTTCCCCTAAATTGGAAAAGGATTTAGCTTCCAGGACAGTTATCTGGTTTACTCTGTGAGTTTACAAGCTGTTAAGAGATTGGCAATACATGGAAGATGCAAATGAAAGAATTAAGAAGCACTGGAAGTACGATGAACAATTGAGCCAGTGTGAATTGTCGTTCCTTTGGCTACGATCACGTTGATATTCTCATAATATCTGTTTAAAACATCCTAATGGACACTGGTGCTGCAGCAAACCGTTGCTCTTAGGATAATTGTGTAACAGTTGGATTTTTCTGAAATAGAGAATGAAATGACAACATTTGTCCAAGTGAATTGAGTTAAGAGTAAACCTGTTGACAACTACAGAAAATGGAAAGATAATTCTGTATCTCACATTAATATGTCGAACACTGATGCCTATACTGGGCAATGTTCAAAACTGAACTTGGACAAACCAATTAGATAACTAAAACAGTTGAGTTGTTAACTAAGCATCTGGAATGTTATACCGTCTTTGATATTCATGTAACTTGCTTCAAGATAATGATTGTCTTTGTTATTTAGTGCAGTCAAATGGAGAATGCTCAAGATCGTTTATGTAATTGGCTTAGATGTGTATGTTGAGAGTTTGAACTTCCTAGTGTAAAGACCATATCGCTCCACTTTATCTAGCCAATGGACTCAAGAGATAATAAAGTAACGCCTCAAGGTGAAACGGTTCAGATTCTAGTTGAATTCTTGGAGGTGGCCATTACATCAATTGTCTTCCTCAAAGGCATTTACCCTTCTGGTGCTTTTGAAAGAAGAAGGTACATGAATGCGGTTGTGCAGAGGGCTCGTCATCCCGAGCTGCAGGATTACATCCACTCAACTGTTTCTGGGCTACTACCCTTCATTCAAAAGGGGCTGGTGGAGAGAGTAGCAGTTATATTTTTCAACGGTGAAAATATCCAAGTGGAGAGATTTGTGTTCAAGCTCATGGTGAACCAGTCTTATGAAAGGAAGGTCGAGAATTCCGACCTGGAGTTCGCCTTAAGATCATTCTTGATCAAGCTCTCTTTCTCAGAACCTCTAACCATGGCTCTTCCGCCTGATTGCAAATGGGAAATAACTGCCTACTTCCAAACCCTTCCAACTTCCAGTACAAGTAAAGATGCAGAGTTATGGATCCCAACGGATACCAAGCAATGGCAACAACCACCAGTAATCACCCCCATCAGGTCCATGAACAGCCAACCTCTGAGTTTGCAGTTATATCTAGAACATCCTAGCTTATCTGAGCCAAAACCTTGTGAATAATAAATGTGCATTAATGTGAAAAGATTTTGCTTAGATTGTTCAAATGGAAAGTTTCTTGAGCTTGTATTTTAGATCTTCTGTACACTGTCCATCTCCATAGTATGTATAAACTCATACAACAATTATTCCTTTACCACATCAGTTTAGAAGCCTGAAAGTGTTCTGATACTGGCTTATTGTCAAGTTTCAATTTTGCAGCTAAAATACTTTCTTTTTCAGGTTTGGATGAAGGGTATGATAGCAAATACTATTAGTCTACTACTGTTGAGTGATACTGCATTCAGAAGAGATCTTACATCTTAAATTACATGACATGAACTTGTATTACAGGTCAGAGATTTTGATTTGAAGATTTAAAAACATAGGTCAGAAAGAAAGAAACACAGAAGGCAGGCATCGTGTATGAATGGTTGACAAGGTTGGGTCCATTATTAGGCAGAAGTTGGAGATAGATCTGAAGCAGGAAAAGGAAAAGGAAAAGGAAATGGAAAAGGGTGGTTGTTTGGTTTGGTAGATTAATGAGAGACATCATAGTTGGGGGTTTGAGGGGTGGATCCCAGGTTGTCAGGCCTGCTACTGTGGCTGTCTTCATTCATGATGGCAATGACATAACTTCCCACTCTCCTTTTTTTAGCTGAGATGTAATGAGTGAAAATCAGAGATGAATATGAATTCTCTGAAACCTTTCAGACCCTCACCACAAAATCAACTAGATGCTAG

Coding sequence (CDS)

ATGGACTCAAGAGATAATAAAGTAACGCCTCAAGGTGAAACGGTTCAGATTCTAGTTGAATTCTTGGAGGTGGCCATTACATCAATTGTCTTCCTCAAAGGCATTTACCCTTCTGGTGCTTTTGAAAGAAGAAGGTACATGAATGCGGTTGTGCAGAGGGCTCGTCATCCCGAGCTGCAGGATTACATCCACTCAACTGTTTCTGGGCTACTACCCTTCATTCAAAAGGGGCTGGTGGAGAGAGTAGCAGTTATATTTTTCAACGGTGAAAATATCCAAGTGGAGAGATTTGTGTTCAAGCTCATGGTGAACCAGTCTTATGAAAGGAAGGTCGAGAATTCCGACCTGGAGTTCGCCTTAAGATCATTCTTGATCAAGCTCTCTTTCTCAGAACCTCTAACCATGGCTCTTCCGCCTGATTGCAAATGGGAAATAACTGCCTACTTCCAAACCCTTCCAACTTCCAGTACAAGTAAAGATGCAGAGTTATGGATCCCAACGGATACCAAGCAATGGCAACAACCACCAGTAATCACCCCCATCAGGTCCATGAACAGCCAACCTCTGAGTTTGCAGTTATATCTAGAACATCCTAGCTTATCTGAGCCAAAACCTTGTGAATAA

Protein sequence

MDSRDNKVTPQGETVQILVEFLEVAITSIVFLKGIYPSGAFERRRYMNAVVQRARHPELQDYIHSTVSGLLPFIQKGLVERVAVIFFNGENIQVERFVFKLMVNQSYERKVENSDLEFALRSFLIKLSFSEPLTMALPPDCKWEITAYFQTLPTSSTSKDAELWIPTDTKQWQQPPVITPIRSMNSQPLSLQLYLEHPSLSEPKPCE

Homology

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BLAST of Tan0013939.2 vs. ExPASy Swiss-Prot
Match: Q94FL5 (DNA polymerase zeta processivity subunit OS=Arabidopsis thaliana OX=3702 GN=REV7 PE=2 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 8.1e-74
Identity = 133/192 (69.27%), Postives = 159/192 (82.81%), Query Frame = 0


Query: 12  GETVQILVEFLEVAITSIVFLKGIYPSGAFERRRYMNAVVQRARHPELQDYIHSTVSGLL 71
           GE  + LV+F+EVAIT IV+LKG YPS AFERRRYMN VVQRARHPEL+DYIHS  SGLL
Sbjct: 10  GEVGRTLVDFMEVAITMIVYLKGFYPSAAFERRRYMNVVVQRARHPELRDYIHSAASGLL 69

Query: 72  PFIQKGLVERVAVIFFNGENIQVERFVFKLMVNQSYERKVENSDLEFALRSFLIKLSFSE 131
           PFI+KGLVERVAV+FF+ +N+ VERF+FK+ +  S    VE   LEFALRSFLIKLS S+
Sbjct: 70  PFIEKGLVERVAVVFFSEDNVPVERFIFKITIKPSCAALVEEGQLEFALRSFLIKLSVSK 129

Query: 132 PLTMALPPDCKWEITAYFQTLPTSSTSKDAELWIPTDTKQWQQPPVITPIRSMNSQPLSL 191
            L   LP +C+WE+TAY ++LP   +SK+AELWIPTDTKQWQ PPV+TP++S+NS+PL L
Sbjct: 130 SLVKPLPLNCRWEVTAYLRSLPQVGSSKEAELWIPTDTKQWQNPPVLTPVKSLNSEPLCL 189

Query: 192 QLYLEHPSLSEP 204
           QLYLEHPSLSEP
Sbjct: 190 QLYLEHPSLSEP 201

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BLAST of Tan0013939.2 vs. ExPASy Swiss-Prot
Match: Q8QFR4 (Mitotic spindle assembly checkpoint protein MAD2B OS=Xenopus laevis OX=8355 GN=mad2l2 PE=1 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.2e-21
Identity = 63/187 (33.69%), Postives = 105/187 (56.15%), Query Frame = 0


Query: 17  ILVEFLEVAITSIVFLKGIYPSGAFERRRYMNAVVQRARHPELQDYIHSTVSGLLPFIQK 76
           IL EFLEVA+  I++++ +YP+G F++R+  N  VQ + HPEL  YI  T+  + P I+K
Sbjct: 18  ILCEFLEVAVHLILYVREVYPTGIFQKRKKYNVPVQMSCHPELNRYIQDTLHCVKPLIEK 77

Query: 77  GLVERVAVIFFNGENIQVERFVFKLMVNQSYERKVEN--SDLEFALRSFLIKLSFSEPLT 136
             VE+V V+  + E+  VERFVF++          ++  S +E  LR+F++K+S  + + 
Sbjct: 78  NDVEKVVVVILDKEHHPVERFVFEIAQPPLLSISSDSLLSHVEQLLRAFILKISVCDAVL 137

Query: 137 MALPPDCKWEITAYFQTLPTSSTSKDAEL----WIPTDTKQ-WQQPPVITPIRSMNSQPL 196
              PP C + +  + +   T +  K   +    WI  D +    Q P + P+++M S  L
Sbjct: 138 DNNPPGCTFTLLVHTREAATRNMEKIQVIKDFPWILADEQDVHMQEPRLIPLKTMTSDIL 197

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BLAST of Tan0013939.2 vs. ExPASy Swiss-Prot
Match: Q568H3 (Mitotic spindle assembly checkpoint protein MAD2B OS=Danio rerio OX=7955 GN=mad2l2 PE=2 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.1e-21
Identity = 63/187 (33.69%), Postives = 103/187 (55.08%), Query Frame = 0


Query: 17  ILVEFLEVAITSIVFLKGIYPSGAFERRRYMNAVVQRARHPELQDYIHSTVSGLLPFIQK 76
           IL EFLEVAI  I++++ IYPSG F++R+  N  VQ + HP+L  YI  T+  + P I+K
Sbjct: 18  ILCEFLEVAIHLILYVRDIYPSGIFQKRQKYNVPVQMSCHPQLNQYIQDTLHCVKPLIEK 77

Query: 77  GLVERVAVIFFNGENIQVERFVFKLMVNQSYERKVEN--SDLEFALRSFLIKLSFSEPLT 136
              E+V V+  N E+  VERFVF++          E   S +E  LR+ ++K+S  + + 
Sbjct: 78  NEAEKVVVVIMNKEHHPVERFVFEISQPPLLAISSETLLSHVEQLLRAMILKISVCDAVL 137

Query: 137 MALPPDCKWEITAYFQTLPTSSTSKDAEL----WIPTDTKQ-WQQPPVITPIRSMNSQPL 196
            + PP C + +  + +   T +  K   +    WI  D ++   +   + P+++M S  L
Sbjct: 138 DSNPPGCTFTVLVHTREAATRNMEKVQVIKDFPWIVADEQEVHMEEAKLIPLKTMTSDIL 197

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BLAST of Tan0013939.2 vs. ExPASy Swiss-Prot
Match: Q28H85 (Mitotic spindle assembly checkpoint protein MAD2B OS=Xenopus tropicalis OX=8364 GN=mad2l2 PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.7e-21
Identity = 63/187 (33.69%), Postives = 104/187 (55.61%), Query Frame = 0


Query: 17  ILVEFLEVAITSIVFLKGIYPSGAFERRRYMNAVVQRARHPELQDYIHSTVSGLLPFIQK 76
           IL EFLEVA+  I++++ +YP G F++R+  N  VQ + HPEL  YI  T+  + P I+K
Sbjct: 18  ILCEFLEVAVHLILYVREVYPIGIFQKRKKYNVPVQMSCHPELNRYIQDTLHCVKPLIEK 77

Query: 77  GLVERVAVIFFNGENIQVERFVFKLMVNQSYERKVEN--SDLEFALRSFLIKLSFSEPLT 136
             VE+V V+  + E+  VERFVF++          ++  S +E  LR+F++K+S  + + 
Sbjct: 78  NDVEKVVVVILDKEHHPVERFVFEIAQPPLLSISSDSLLSHVEQLLRAFILKISVCDAVL 137

Query: 137 MALPPDCKWEITAYFQTLPTSSTSKDAEL----WIPTDTKQ-WQQPPVITPIRSMNSQPL 196
              PP C + +  + +   T +  K   +    WI  D +    Q P + P+++M S  L
Sbjct: 138 DNNPPGCTFTLLVHTREAATRNMEKIQVIKDFPWILADEQDVHMQEPRLIPLKTMTSDIL 197

[Close]

BLAST of Tan0013939.2 vs. ExPASy Swiss-Prot
Match: Q4KWZ6 (Mitotic spindle assembly checkpoint protein MAD2B OS=Gallus gallus OX=9031 GN=MAD2L2 PE=1 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 6.1e-21
Identity = 61/187 (32.62%), Postives = 103/187 (55.08%), Query Frame = 0


Query: 17  ILVEFLEVAITSIVFLKGIYPSGAFERRRYMNAVVQRARHPELQDYIHSTVSGLLPFIQK 76
           +L EFLEVA+  I++++ +YP G F++R+  N  VQ + HPEL  YI  T+  + P ++K
Sbjct: 18  VLSEFLEVAVHLILYVREVYPIGIFQKRKKYNVPVQMSCHPELNQYIQDTLHCVKPLLEK 77

Query: 77  GLVERVAVIFFNGENIQVERFVFKLMVNQSYERKVEN--SDLEFALRSFLIKLSFSEPLT 136
             VE+V V+  + E+  VERFVF++          E+  S +E  LR+F++K+S  + + 
Sbjct: 78  NDVEKVVVVILDKEHHPVERFVFEITQPPLLSISSESLLSHVEQLLRAFILKISVCDAVL 137

Query: 137 MALPPDCKWEITAYFQTLPTSSTSKDAEL----WIPTDTKQ-WQQPPVITPIRSMNSQPL 196
              PP C + +  + +   T +  K   +    WI  D +      P + P+++M S  L
Sbjct: 138 DNNPPGCTFTVLVHTREAATRNMEKIQVIKDFPWILADEQDVHMHDPRLIPLKTMTSDIL 197

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BLAST of Tan0013939.2 vs. NCBI nr
Match: XP_022947726.1 (DNA polymerase zeta processivity subunit isoform X2 [Cucurbita moschata] >XP_022947728.1 DNA polymerase zeta processivity subunit isoform X2 [Cucurbita moschata] >KAG7034853.1 DNA polymerase zeta processivity subunit [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 396.0 bits (1016), Expect = 2.0e-106
Identity = 196/207 (94.69%), Postives = 201/207 (97.10%), Query Frame = 0


Query: 1   MDSRDNKVTPQGETVQILVEFLEVAITSIVFLKGIYPSGAFERRRYMNAVVQRARHPELQ 60
           MDSRDNKV PQGETVQILVEFLEVAITSIVFLKGIYPSGAFERRRYMNAVVQRARHPELQ
Sbjct: 1   MDSRDNKVAPQGETVQILVEFLEVAITSIVFLKGIYPSGAFERRRYMNAVVQRARHPELQ 60

Query: 61  DYIHSTVSGLLPFIQKGLVERVAVIFFNGENIQVERFVFKLMVNQSYERKVENSDLEFAL 120
           DYIHSTVSGLLPFIQKGLVERVAVIFFNGENIQVERFVFKL+VNQSYE KVENSDLEFAL
Sbjct: 61  DYIHSTVSGLLPFIQKGLVERVAVIFFNGENIQVERFVFKLIVNQSYESKVENSDLEFAL 120

Query: 121 RSFLIKLSFSEPLTMALPPDCKWEITAYFQTLPTSSTSKDAELWIPTDTKQWQQPPVITP 180
           RSFLIKLS +EPLT  LPPDCKWEITAYFQTLP+S TSKDAELWIPTDTKQWQQPP+ITP
Sbjct: 121 RSFLIKLSVTEPLTKTLPPDCKWEITAYFQTLPSSGTSKDAELWIPTDTKQWQQPPIITP 180

Query: 181 IRSMNSQPLSLQLYLEHPSLSEPKPCE 208
           I+SMNSQPLSLQLYLEHPSLSEPKPCE
Sbjct: 181 IKSMNSQPLSLQLYLEHPSLSEPKPCE 207

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BLAST of Tan0013939.2 vs. NCBI nr
Match: XP_023532096.1 (DNA polymerase zeta processivity subunit isoform X1 [Cucurbita pepo subsp. pepo] >XP_023532097.1 DNA polymerase zeta processivity subunit isoform X1 [Cucurbita pepo subsp. pepo] >XP_023532098.1 DNA polymerase zeta processivity subunit isoform X1 [Cucurbita pepo subsp. pepo] >XP_023532099.1 DNA polymerase zeta processivity subunit isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 394.4 bits (1012), Expect = 5.9e-106
Identity = 195/207 (94.20%), Postives = 201/207 (97.10%), Query Frame = 0


Query: 1   MDSRDNKVTPQGETVQILVEFLEVAITSIVFLKGIYPSGAFERRRYMNAVVQRARHPELQ 60
           MDSRDNKV PQGETV+ILVEFLEVAITSIVFLKGIYPSGAFERRRYMNAVVQRARHPELQ
Sbjct: 1   MDSRDNKVAPQGETVKILVEFLEVAITSIVFLKGIYPSGAFERRRYMNAVVQRARHPELQ 60

Query: 61  DYIHSTVSGLLPFIQKGLVERVAVIFFNGENIQVERFVFKLMVNQSYERKVENSDLEFAL 120
           DYIHSTVSGLLPFIQKGLVERVAVIFFNGENIQVERFVFKL+VNQSYE KVENSDLEFAL
Sbjct: 61  DYIHSTVSGLLPFIQKGLVERVAVIFFNGENIQVERFVFKLIVNQSYESKVENSDLEFAL 120

Query: 121 RSFLIKLSFSEPLTMALPPDCKWEITAYFQTLPTSSTSKDAELWIPTDTKQWQQPPVITP 180
           RSFLIKLS +EPLT  LPPDCKWEITAYFQTLP+S TSKDAELWIPTDTKQWQQPP+ITP
Sbjct: 121 RSFLIKLSVTEPLTKTLPPDCKWEITAYFQTLPSSGTSKDAELWIPTDTKQWQQPPIITP 180

Query: 181 IRSMNSQPLSLQLYLEHPSLSEPKPCE 208
           I+SMNSQPLSLQLYLEHPSLSEPKPCE
Sbjct: 181 IKSMNSQPLSLQLYLEHPSLSEPKPCE 207

[Close]

BLAST of Tan0013939.2 vs. NCBI nr
Match: XP_022947722.1 (DNA polymerase zeta processivity subunit isoform X1 [Cucurbita moschata] >XP_022947723.1 DNA polymerase zeta processivity subunit isoform X1 [Cucurbita moschata] >XP_022947724.1 DNA polymerase zeta processivity subunit isoform X1 [Cucurbita moschata] >XP_022947725.1 DNA polymerase zeta processivity subunit isoform X1 [Cucurbita moschata])

HSP 1 Score: 388.3 bits (996), Expect = 4.2e-104
Identity = 196/216 (90.74%), Postives = 201/216 (93.06%), Query Frame = 0


Query: 1   MDSRDNKVTPQGETVQILVEFLEVAITSIVFLKGIYPSG---------AFERRRYMNAVV 60
           MDSRDNKV PQGETVQILVEFLEVAITSIVFLKGIYPSG         AFERRRYMNAVV
Sbjct: 1   MDSRDNKVAPQGETVQILVEFLEVAITSIVFLKGIYPSGAILSLICLCAFERRRYMNAVV 60

Query: 61  QRARHPELQDYIHSTVSGLLPFIQKGLVERVAVIFFNGENIQVERFVFKLMVNQSYERKV 120
           QRARHPELQDYIHSTVSGLLPFIQKGLVERVAVIFFNGENIQVERFVFKL+VNQSYE KV
Sbjct: 61  QRARHPELQDYIHSTVSGLLPFIQKGLVERVAVIFFNGENIQVERFVFKLIVNQSYESKV 120

Query: 121 ENSDLEFALRSFLIKLSFSEPLTMALPPDCKWEITAYFQTLPTSSTSKDAELWIPTDTKQ 180
           ENSDLEFALRSFLIKLS +EPLT  LPPDCKWEITAYFQTLP+S TSKDAELWIPTDTKQ
Sbjct: 121 ENSDLEFALRSFLIKLSVTEPLTKTLPPDCKWEITAYFQTLPSSGTSKDAELWIPTDTKQ 180

Query: 181 WQQPPVITPIRSMNSQPLSLQLYLEHPSLSEPKPCE 208
           WQQPP+ITPI+SMNSQPLSLQLYLEHPSLSEPKPCE
Sbjct: 181 WQQPPIITPIKSMNSQPLSLQLYLEHPSLSEPKPCE 216

[Close]

BLAST of Tan0013939.2 vs. NCBI nr
Match: XP_022970852.1 (DNA polymerase zeta processivity subunit isoform X2 [Cucurbita maxima] >XP_022970853.1 DNA polymerase zeta processivity subunit isoform X2 [Cucurbita maxima])

HSP 1 Score: 388.3 bits (996), Expect = 4.2e-104
Identity = 193/207 (93.24%), Postives = 200/207 (96.62%), Query Frame = 0


Query: 1   MDSRDNKVTPQGETVQILVEFLEVAITSIVFLKGIYPSGAFERRRYMNAVVQRARHPELQ 60
           MDSRDNKVTPQGETVQILVEFLEVAITSIVFLKGIYPSGAFERRRYMNAVVQRARHPELQ
Sbjct: 1   MDSRDNKVTPQGETVQILVEFLEVAITSIVFLKGIYPSGAFERRRYMNAVVQRARHPELQ 60

Query: 61  DYIHSTVSGLLPFIQKGLVERVAVIFFNGENIQVERFVFKLMVNQSYERKVENSDLEFAL 120
           DYIHSTVSGLLPFIQKGLVERVAVIFFNGENIQVERFVFKL+VNQSY+ KVENSDLEFAL
Sbjct: 61  DYIHSTVSGLLPFIQKGLVERVAVIFFNGENIQVERFVFKLIVNQSYKSKVENSDLEFAL 120

Query: 121 RSFLIKLSFSEPLTMALPPDCKWEITAYFQTLPTSSTSKDAELWIPTDTKQWQQPPVITP 180
           RSFLIKLS +EPLT  LP DCKWEITAYFQTLP+S TSKDAELWIPTDTKQWQQPP+ITP
Sbjct: 121 RSFLIKLSVTEPLTKTLPTDCKWEITAYFQTLPSSGTSKDAELWIPTDTKQWQQPPIITP 180

Query: 181 IRSMNSQPLSLQLYLEHPSLSEPKPCE 208
           I+SM+SQPLSLQLYLEHPSLSEPK CE
Sbjct: 181 IKSMHSQPLSLQLYLEHPSLSEPKSCE 207

[Close]

BLAST of Tan0013939.2 vs. NCBI nr
Match: XP_038900295.1 (DNA polymerase zeta processivity subunit [Benincasa hispida] >XP_038900296.1 DNA polymerase zeta processivity subunit [Benincasa hispida])

HSP 1 Score: 384.0 bits (985), Expect = 8.0e-103
Identity = 190/207 (91.79%), Postives = 197/207 (95.17%), Query Frame = 0


Query: 1   MDSRDNKVTPQGETVQILVEFLEVAITSIVFLKGIYPSGAFERRRYMNAVVQRARHPELQ 60
           MDSRD KV PQGE VQILVEFLEVAITS+VFLKGIYPSGAFERRRYMNAVVQ+ARHPELQ
Sbjct: 1   MDSRDIKVPPQGEIVQILVEFLEVAITSVVFLKGIYPSGAFERRRYMNAVVQKARHPELQ 60

Query: 61  DYIHSTVSGLLPFIQKGLVERVAVIFFNGENIQVERFVFKLMVNQSYERKVENSDLEFAL 120
           DYIHSTVSGLLPFIQKGLVERVAVIFFNG+N+QVERFVFKL VNQSYE KVENSDLEFAL
Sbjct: 61  DYIHSTVSGLLPFIQKGLVERVAVIFFNGDNVQVERFVFKLTVNQSYESKVENSDLEFAL 120

Query: 121 RSFLIKLSFSEPLTMALPPDCKWEITAYFQTLPTSSTSKDAELWIPTDTKQWQQPPVITP 180
           R+FLIKLS SEPLT  LPPDCKWEITAYFQTLP+S TSKDAE WIPTDTKQWQQPPVITP
Sbjct: 121 RAFLIKLSVSEPLTKVLPPDCKWEITAYFQTLPSSGTSKDAESWIPTDTKQWQQPPVITP 180

Query: 181 IRSMNSQPLSLQLYLEHPSLSEPKPCE 208
           I+SMNSQPLSLQLYLEHPSLSEPKPCE
Sbjct: 181 IKSMNSQPLSLQLYLEHPSLSEPKPCE 207

[Close]

BLAST of Tan0013939.2 vs. ExPASy TrEMBL
Match: A0A6J1G790 (DNA polymerase zeta processivity subunit isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111451503 PE=4 SV=1)

HSP 1 Score: 396.0 bits (1016), Expect = 9.9e-107
Identity = 196/207 (94.69%), Postives = 201/207 (97.10%), Query Frame = 0


Query: 1   MDSRDNKVTPQGETVQILVEFLEVAITSIVFLKGIYPSGAFERRRYMNAVVQRARHPELQ 60
           MDSRDNKV PQGETVQILVEFLEVAITSIVFLKGIYPSGAFERRRYMNAVVQRARHPELQ
Sbjct: 1   MDSRDNKVAPQGETVQILVEFLEVAITSIVFLKGIYPSGAFERRRYMNAVVQRARHPELQ 60

Query: 61  DYIHSTVSGLLPFIQKGLVERVAVIFFNGENIQVERFVFKLMVNQSYERKVENSDLEFAL 120
           DYIHSTVSGLLPFIQKGLVERVAVIFFNGENIQVERFVFKL+VNQSYE KVENSDLEFAL
Sbjct: 61  DYIHSTVSGLLPFIQKGLVERVAVIFFNGENIQVERFVFKLIVNQSYESKVENSDLEFAL 120

Query: 121 RSFLIKLSFSEPLTMALPPDCKWEITAYFQTLPTSSTSKDAELWIPTDTKQWQQPPVITP 180
           RSFLIKLS +EPLT  LPPDCKWEITAYFQTLP+S TSKDAELWIPTDTKQWQQPP+ITP
Sbjct: 121 RSFLIKLSVTEPLTKTLPPDCKWEITAYFQTLPSSGTSKDAELWIPTDTKQWQQPPIITP 180

Query: 181 IRSMNSQPLSLQLYLEHPSLSEPKPCE 208
           I+SMNSQPLSLQLYLEHPSLSEPKPCE
Sbjct: 181 IKSMNSQPLSLQLYLEHPSLSEPKPCE 207

[Close]

BLAST of Tan0013939.2 vs. ExPASy TrEMBL
Match: A0A6J1I0B4 (DNA polymerase zeta processivity subunit isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111469702 PE=4 SV=1)

HSP 1 Score: 388.3 bits (996), Expect = 2.1e-104
Identity = 193/207 (93.24%), Postives = 200/207 (96.62%), Query Frame = 0


Query: 1   MDSRDNKVTPQGETVQILVEFLEVAITSIVFLKGIYPSGAFERRRYMNAVVQRARHPELQ 60
           MDSRDNKVTPQGETVQILVEFLEVAITSIVFLKGIYPSGAFERRRYMNAVVQRARHPELQ
Sbjct: 1   MDSRDNKVTPQGETVQILVEFLEVAITSIVFLKGIYPSGAFERRRYMNAVVQRARHPELQ 60

Query: 61  DYIHSTVSGLLPFIQKGLVERVAVIFFNGENIQVERFVFKLMVNQSYERKVENSDLEFAL 120
           DYIHSTVSGLLPFIQKGLVERVAVIFFNGENIQVERFVFKL+VNQSY+ KVENSDLEFAL
Sbjct: 61  DYIHSTVSGLLPFIQKGLVERVAVIFFNGENIQVERFVFKLIVNQSYKSKVENSDLEFAL 120

Query: 121 RSFLIKLSFSEPLTMALPPDCKWEITAYFQTLPTSSTSKDAELWIPTDTKQWQQPPVITP 180
           RSFLIKLS +EPLT  LP DCKWEITAYFQTLP+S TSKDAELWIPTDTKQWQQPP+ITP
Sbjct: 121 RSFLIKLSVTEPLTKTLPTDCKWEITAYFQTLPSSGTSKDAELWIPTDTKQWQQPPIITP 180

Query: 181 IRSMNSQPLSLQLYLEHPSLSEPKPCE 208
           I+SM+SQPLSLQLYLEHPSLSEPK CE
Sbjct: 181 IKSMHSQPLSLQLYLEHPSLSEPKSCE 207

[Close]

BLAST of Tan0013939.2 vs. ExPASy TrEMBL
Match: A0A6J1G7Q4 (DNA polymerase zeta processivity subunit isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111451503 PE=4 SV=1)

HSP 1 Score: 388.3 bits (996), Expect = 2.1e-104
Identity = 196/216 (90.74%), Postives = 201/216 (93.06%), Query Frame = 0


Query: 1   MDSRDNKVTPQGETVQILVEFLEVAITSIVFLKGIYPSG---------AFERRRYMNAVV 60
           MDSRDNKV PQGETVQILVEFLEVAITSIVFLKGIYPSG         AFERRRYMNAVV
Sbjct: 1   MDSRDNKVAPQGETVQILVEFLEVAITSIVFLKGIYPSGAILSLICLCAFERRRYMNAVV 60

Query: 61  QRARHPELQDYIHSTVSGLLPFIQKGLVERVAVIFFNGENIQVERFVFKLMVNQSYERKV 120
           QRARHPELQDYIHSTVSGLLPFIQKGLVERVAVIFFNGENIQVERFVFKL+VNQSYE KV
Sbjct: 61  QRARHPELQDYIHSTVSGLLPFIQKGLVERVAVIFFNGENIQVERFVFKLIVNQSYESKV 120

Query: 121 ENSDLEFALRSFLIKLSFSEPLTMALPPDCKWEITAYFQTLPTSSTSKDAELWIPTDTKQ 180
           ENSDLEFALRSFLIKLS +EPLT  LPPDCKWEITAYFQTLP+S TSKDAELWIPTDTKQ
Sbjct: 121 ENSDLEFALRSFLIKLSVTEPLTKTLPPDCKWEITAYFQTLPSSGTSKDAELWIPTDTKQ 180

Query: 181 WQQPPVITPIRSMNSQPLSLQLYLEHPSLSEPKPCE 208
           WQQPP+ITPI+SMNSQPLSLQLYLEHPSLSEPKPCE
Sbjct: 181 WQQPPIITPIKSMNSQPLSLQLYLEHPSLSEPKPCE 216

[Close]

BLAST of Tan0013939.2 vs. ExPASy TrEMBL
Match: A0A6J1I6U9 (DNA polymerase zeta processivity subunit isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111469702 PE=4 SV=1)

HSP 1 Score: 380.6 bits (976), Expect = 4.3e-102
Identity = 193/216 (89.35%), Postives = 200/216 (92.59%), Query Frame = 0


Query: 1   MDSRDNKVTPQGETVQILVEFLEVAITSIVFLKGIYPSG---------AFERRRYMNAVV 60
           MDSRDNKVTPQGETVQILVEFLEVAITSIVFLKGIYPSG         AFERRRYMNAVV
Sbjct: 1   MDSRDNKVTPQGETVQILVEFLEVAITSIVFLKGIYPSGAILSLICLCAFERRRYMNAVV 60

Query: 61  QRARHPELQDYIHSTVSGLLPFIQKGLVERVAVIFFNGENIQVERFVFKLMVNQSYERKV 120
           QRARHPELQDYIHSTVSGLLPFIQKGLVERVAVIFFNGENIQVERFVFKL+VNQSY+ KV
Sbjct: 61  QRARHPELQDYIHSTVSGLLPFIQKGLVERVAVIFFNGENIQVERFVFKLIVNQSYKSKV 120

Query: 121 ENSDLEFALRSFLIKLSFSEPLTMALPPDCKWEITAYFQTLPTSSTSKDAELWIPTDTKQ 180
           ENSDLEFALRSFLIKLS +EPLT  LP DCKWEITAYFQTLP+S TSKDAELWIPTDTKQ
Sbjct: 121 ENSDLEFALRSFLIKLSVTEPLTKTLPTDCKWEITAYFQTLPSSGTSKDAELWIPTDTKQ 180

Query: 181 WQQPPVITPIRSMNSQPLSLQLYLEHPSLSEPKPCE 208
           WQQPP+ITPI+SM+SQPLSLQLYLEHPSLSEPK CE
Sbjct: 181 WQQPPIITPIKSMHSQPLSLQLYLEHPSLSEPKSCE 216

[Close]

BLAST of Tan0013939.2 vs. ExPASy TrEMBL
Match: A0A6J1D766 (DNA polymerase zeta processivity subunit OS=Momordica charantia OX=3673 GN=LOC111017977 PE=4 SV=1)

HSP 1 Score: 374.8 bits (961), Expect = 2.3e-100
Identity = 187/205 (91.22%), Postives = 194/205 (94.63%), Query Frame = 0


Query: 1   MDSRDNKVTPQGETVQILVEFLEVAITSIVFLKGIYPSGAFERRRYMNAVVQRARHPELQ 60
           MD RDNKV PQGETVQILVEFLEVAITSIVFLKGIYPSGAFERRRYMNAVVQ ARHPELQ
Sbjct: 1   MDCRDNKVPPQGETVQILVEFLEVAITSIVFLKGIYPSGAFERRRYMNAVVQMARHPELQ 60

Query: 61  DYIHSTVSGLLPFIQKGLVERVAVIFFNGENIQVERFVFKLMVNQSYERKVENSDLEFAL 120
           DYIHSTVSGL+PFIQKGLVERVAVIFFNGENI VE F+FKLMVNQSYE KVE+SDLEFAL
Sbjct: 61  DYIHSTVSGLVPFIQKGLVERVAVIFFNGENIPVESFIFKLMVNQSYESKVEDSDLEFAL 120

Query: 121 RSFLIKLSFSEPLTMALPPDCKWEITAYFQTLPTSSTSKDAELWIPTDTKQWQQPPVITP 180
           RSFLIKLS S PLT  LPPDC+WEITAYF+ LP+SSTSKDAELWIPTDTKQWQQPPVITP
Sbjct: 121 RSFLIKLSVSGPLTKVLPPDCRWEITAYFKMLPSSSTSKDAELWIPTDTKQWQQPPVITP 180

Query: 181 IRSMNSQPLSLQLYLEHPSLSEPKP 206
           I+SMNSQPLSLQLYLEHPSLSEPKP
Sbjct: 181 IKSMNSQPLSLQLYLEHPSLSEPKP 205

[Close]

BLAST of Tan0013939.2 vs. TAIR 10
Match: AT1G16590.1 (DNA-binding HORMA family protein )

HSP 1 Score: 278.1 bits (710), Expect = 5.8e-75
Identity = 133/192 (69.27%), Postives = 159/192 (82.81%), Query Frame = 0


Query: 12  GETVQILVEFLEVAITSIVFLKGIYPSGAFERRRYMNAVVQRARHPELQDYIHSTVSGLL 71
           GE  + LV+F+EVAIT IV+LKG YPS AFERRRYMN VVQRARHPEL+DYIHS  SGLL
Sbjct: 10  GEVGRTLVDFMEVAITMIVYLKGFYPSAAFERRRYMNVVVQRARHPELRDYIHSAASGLL 69

Query: 72  PFIQKGLVERVAVIFFNGENIQVERFVFKLMVNQSYERKVENSDLEFALRSFLIKLSFSE 131
           PFI+KGLVERVAV+FF+ +N+ VERF+FK+ +  S    VE   LEFALRSFLIKLS S+
Sbjct: 70  PFIEKGLVERVAVVFFSEDNVPVERFIFKITIKPSCAALVEEGQLEFALRSFLIKLSVSK 129

Query: 132 PLTMALPPDCKWEITAYFQTLPTSSTSKDAELWIPTDTKQWQQPPVITPIRSMNSQPLSL 191
            L   LP +C+WE+TAY ++LP   +SK+AELWIPTDTKQWQ PPV+TP++S+NS+PL L
Sbjct: 130 SLVKPLPLNCRWEVTAYLRSLPQVGSSKEAELWIPTDTKQWQNPPVLTPVKSLNSEPLCL 189

Query: 192 QLYLEHPSLSEP 204
           QLYLEHPSLSEP
Sbjct: 190 QLYLEHPSLSEP 201

The following BLAST results are available for this feature:

BLAST of Tan0013939.2 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94FL5	8.1e-74	69.27	DNA polymerase zeta processivity subunit OS=Arabidopsis thaliana OX=3702 GN=REV7...	[more]
Q8QFR4	1.2e-21	33.69	Mitotic spindle assembly checkpoint protein MAD2B OS=Xenopus laevis OX=8355 GN=m...	[more]
Q568H3	2.1e-21	33.69	Mitotic spindle assembly checkpoint protein MAD2B OS=Danio rerio OX=7955 GN=mad2...	[more]
Q28H85	2.7e-21	33.69	Mitotic spindle assembly checkpoint protein MAD2B OS=Xenopus tropicalis OX=8364 ...	[more]
Q4KWZ6	6.1e-21	32.62	Mitotic spindle assembly checkpoint protein MAD2B OS=Gallus gallus OX=9031 GN=MA...	[more]

BLAST of Tan0013939.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022947726.1	2.0e-106	94.69	DNA polymerase zeta processivity subunit isoform X2 [Cucurbita moschata] >XP_022...	[more]
XP_023532096.1	5.9e-106	94.20	DNA polymerase zeta processivity subunit isoform X1 [Cucurbita pepo subsp. pepo]...	[more]
XP_022947722.1	4.2e-104	90.74	DNA polymerase zeta processivity subunit isoform X1 [Cucurbita moschata] >XP_022...	[more]
XP_022970852.1	4.2e-104	93.24	DNA polymerase zeta processivity subunit isoform X2 [Cucurbita maxima] >XP_02297...	[more]
XP_038900295.1	8.0e-103	91.79	DNA polymerase zeta processivity subunit [Benincasa hispida] >XP_038900296.1 DNA...	[more]

BLAST of Tan0013939.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G790	9.9e-107	94.69	DNA polymerase zeta processivity subunit isoform X2 OS=Cucurbita moschata OX=366...	[more]
A0A6J1I0B4	2.1e-104	93.24	DNA polymerase zeta processivity subunit isoform X2 OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1G7Q4	2.1e-104	90.74	DNA polymerase zeta processivity subunit isoform X1 OS=Cucurbita moschata OX=366...	[more]
A0A6J1I6U9	4.3e-102	89.35	DNA polymerase zeta processivity subunit isoform X1 OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1D766	2.3e-100	91.22	DNA polymerase zeta processivity subunit OS=Momordica charantia OX=3673 GN=LOC11...	[more]

BLAST of Tan0013939.2 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G16590.1	5.8e-75	69.27	DNA-binding HORMA family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036570	HORMA domain superfamily	GENE3D	3.30.900.10	HORMA domain	coord: 7..199 e-value: 9.7E-46 score: 157.8
IPR036570	HORMA domain superfamily	SUPERFAMILY	56019	The spindle assembly checkpoint protein mad2	coord: 11..195
IPR003511	HORMA domain	PFAM	PF02301	HORMA	coord: 16..113 e-value: 6.6E-8 score: 32.4
IPR003511	HORMA domain	PROSITE	PS50815	HORMA	coord: 12..195 score: 33.456802
IPR045091	Mad2-like	PANTHER	PTHR11842	MITOTIC SPINDLE ASSEMBLY CHECKPOINT PROTEIN MAD2	coord: 1..200
None	No IPR available	PANTHER	PTHR11842:SF10	MITOTIC SPINDLE ASSEMBLY CHECKPOINT PROTEIN MAD2B	coord: 1..200

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Tan0013939	Tan0013939	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0013939.2-five_prime_utr	Tan0013939.2-five_prime_utr-LG05:4568283..4569262	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0013939.2-exon	Tan0013939.2-exon-LG05:4568283..4569296	exon
Tan0013939.2-exon	Tan0013939.2-exon-LG05:4569398..4569478	exon
Tan0013939.2-exon	Tan0013939.2-exon-LG05:4569795..4569907	exon
Tan0013939.2-exon	Tan0013939.2-exon-LG05:4570770..4570959	exon
Tan0013939.2-exon	Tan0013939.2-exon-LG05:4571101..4572026	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0013939.2-cds	Tan0013939.2-cds-LG05:4569263..4569296	CDS
Tan0013939.2-cds	Tan0013939.2-cds-LG05:4569398..4569478	CDS
Tan0013939.2-cds	Tan0013939.2-cds-LG05:4569795..4569907	CDS
Tan0013939.2-cds	Tan0013939.2-cds-LG05:4570770..4570959	CDS
Tan0013939.2-cds	Tan0013939.2-cds-LG05:4571101..4571306	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0013939.2-three_prime_utr	Tan0013939.2-three_prime_utr-LG05:4571307..4572026	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Tan0013939.2	Tan0013939.2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006974	cellular response to DNA damage stimulus
biological_process	GO:0010224	response to UV-B
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016035	zeta DNA polymerase complex