Tan0013116.1 (mRNA) Snake gourd v1

Overview


Name	Tan0013116.1
Type	mRNA
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Gag/pol protein
Location	LG11: 26507584 .. 26507895 (+)
Sequence length	312
RNA-Seq Expression	Tan0013116.1
Synteny	Tan0013116.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGATCTCAAGTTTGTGCTAACTGAGGAGTGTCCTCAGGTGTCAAGCTCGAATATTACACGAAATATTCGAGATGCATATGATCGATGGATCAAGGCCAATGATAAGGCCAAGGTCTATATGCTGGCAAGTATGTTTGACATATTAGCAAAGAAGCACGAGGGCATGATGACCGCTAAGGAAATCATGGATTCAGTGCAGGGTATGTTTGGACAACAGTCTACAGAGGCCCAACACAATGCCTCAAGTATATATTCAACTCGAGGATGCCAGAGGGTTCATCTGTTCGGGATCATGTCCCTGATATGA

mRNA sequence

ATGGATGATCTCAAGTTTGTGCTAACTGAGGAGTGTCCTCAGGTGTCAAGCTCGAATATTACACGAAATATTCGAGATGCATATGATCGATGGATCAAGGCCAATGATAAGGCCAAGGTCTATATGCTGGCAAGTATGTTTGACATATTAGCAAAGAAGCACGAGGGCATGATGACCGCTAAGGAAATCATGGATTCAGTGCAGGGTATGTTTGGACAACAGTCTACAGAGGCCCAACACAATGCCTCAAGTATATATTCAACTCGAGGATGCCAGAGGGTTCATCTGTTCGGGATCATGTCCCTGATATGA

Coding sequence (CDS)

ATGGATGATCTCAAGTTTGTGCTAACTGAGGAGTGTCCTCAGGTGTCAAGCTCGAATATTACACGAAATATTCGAGATGCATATGATCGATGGATCAAGGCCAATGATAAGGCCAAGGTCTATATGCTGGCAAGTATGTTTGACATATTAGCAAAGAAGCACGAGGGCATGATGACCGCTAAGGAAATCATGGATTCAGTGCAGGGTATGTTTGGACAACAGTCTACAGAGGCCCAACACAATGCCTCAAGTATATATTCAACTCGAGGATGCCAGAGGGTTCATCTGTTCGGGATCATGTCCCTGATATGA

Protein sequence

MDDLKFVLTEECPQVSSSNITRNIRDAYDRWIKANDKAKVYMLASMFDILAKKHEGMMTAKEIMDSVQGMFGQQSTEAQHNASSIYSTRGCQRVHLFGIMSLI

Homology

[Close]

BLAST of Tan0013116.1 vs. NCBI nr
Match: XP_022157844.1 (uncharacterized protein LOC111024457 [Momordica charantia])

HSP 1 Score: 121.7 bits (304), Expect = 3.7e-24
Identity = 54/82 (65.85%), Postives = 71/82 (86.59%), Query Frame = 0


Query: 1   MDDLKFVLTEECPQVSSSNITRNIRDAYDRWIKANDKAKVYMLASMFDILAKKHEGMMTA 60
           +DDL+FVLTEECPQ  ++N  RN+R+A+DRW+KANDKA+VY+LASM D+LAKKHE +MTA
Sbjct: 32  VDDLRFVLTEECPQTPATNANRNVREAFDRWVKANDKARVYILASMTDVLAKKHEPLMTA 91

Query: 61  KEIMDSVQGMFGQQSTEAQHNA 83
           KEIMDS++ MFG+ S+  +H A
Sbjct: 92  KEIMDSLKAMFGEPSSTLRHEA 113

[Close]

BLAST of Tan0013116.1 vs. NCBI nr
Match: XP_022143540.1 (uncharacterized protein LOC111013417 [Momordica charantia])

HSP 1 Score: 121.7 bits (304), Expect = 3.7e-24
Identity = 54/82 (65.85%), Postives = 71/82 (86.59%), Query Frame = 0


Query: 1   MDDLKFVLTEECPQVSSSNITRNIRDAYDRWIKANDKAKVYMLASMFDILAKKHEGMMTA 60
           +DDL+FVLTEECPQ  ++N  RN+R+A+DRW+KANDKA+VY+LASM D+LAKKHE +MTA
Sbjct: 32  VDDLRFVLTEECPQTPAANANRNVREAFDRWVKANDKARVYILASMTDVLAKKHEPLMTA 91

Query: 61  KEIMDSVQGMFGQQSTEAQHNA 83
           KEIMDS++ MFG+ S+  +H A
Sbjct: 92  KEIMDSLKAMFGEPSSTLRHEA 113

[Close]

BLAST of Tan0013116.1 vs. NCBI nr
Match: XP_022152352.1 (uncharacterized protein LOC111020095 [Momordica charantia])

HSP 1 Score: 121.3 bits (303), Expect = 4.8e-24
Identity = 63/105 (60.00%), Postives = 79/105 (75.24%), Query Frame = 0


Query: 1   MDDLKFVLTEECPQVSSSNITRNIRDAYDRWIKANDKAKVYMLASMFDILAKKHEGMMTA 60
           +DDLKFVL E+CPQ S+ N T  +R AYDRWIKANDKAKVY+LAS+ D+LAKKHE  +TA
Sbjct: 32  IDDLKFVLQEDCPQASAPNATVAVRIAYDRWIKANDKAKVYILASISDVLAKKHEDTITA 91

Query: 61  KEIMDSVQGMFGQQSTEAQHNA-SSIYSTR----GCQRVHLFGIM 101
           KEIMDS+Q MFGQ S++A+H A   IY++R       R H+  +M
Sbjct: 92  KEIMDSLQSMFGQPSSQARHEALKFIYNSRMKEGSSVREHVLNLM 136

[Close]

BLAST of Tan0013116.1 vs. NCBI nr
Match: XP_022157632.1 (uncharacterized protein LOC111024294 [Momordica charantia])

HSP 1 Score: 120.9 bits (302), Expect = 6.3e-24
Identity = 54/82 (65.85%), Postives = 70/82 (85.37%), Query Frame = 0


Query: 1   MDDLKFVLTEECPQVSSSNITRNIRDAYDRWIKANDKAKVYMLASMFDILAKKHEGMMTA 60
           +DDL+FVLTEECPQ  + N  RN+R+A+DRW+KANDKA+VY+LASM D+LAKKHE +MTA
Sbjct: 32  VDDLQFVLTEECPQTPAENANRNVREAFDRWVKANDKARVYILASMTDVLAKKHEPLMTA 91

Query: 61  KEIMDSVQGMFGQQSTEAQHNA 83
           KEIMDS++ MFG+ S+  +H A
Sbjct: 92  KEIMDSLKAMFGEPSSTLRHEA 113

[Close]

BLAST of Tan0013116.1 vs. NCBI nr
Match: XP_022157095.1 (uncharacterized protein LOC111023904 [Momordica charantia])

HSP 1 Score: 120.2 bits (300), Expect = 1.1e-23
Identity = 54/82 (65.85%), Postives = 70/82 (85.37%), Query Frame = 0


Query: 1   MDDLKFVLTEECPQVSSSNITRNIRDAYDRWIKANDKAKVYMLASMFDILAKKHEGMMTA 60
           +DDL+FVLTEECPQ  + N  RN+R+A+DRW+KANDKA+VY+LASM D+LAKKHE +MTA
Sbjct: 32  VDDLRFVLTEECPQTPAVNANRNVREAFDRWVKANDKARVYILASMTDVLAKKHEPLMTA 91

Query: 61  KEIMDSVQGMFGQQSTEAQHNA 83
           KEIMDS++ MFG+ S+  +H A
Sbjct: 92  KEIMDSLKAMFGELSSTLRHEA 113

[Close]

BLAST of Tan0013116.1 vs. ExPASy TrEMBL
Match: A0A6J1CP29 (uncharacterized protein LOC111013417 OS=Momordica charantia OX=3673 GN=LOC111013417 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.8e-24
Identity = 54/82 (65.85%), Postives = 71/82 (86.59%), Query Frame = 0


Query: 1   MDDLKFVLTEECPQVSSSNITRNIRDAYDRWIKANDKAKVYMLASMFDILAKKHEGMMTA 60
           +DDL+FVLTEECPQ  ++N  RN+R+A+DRW+KANDKA+VY+LASM D+LAKKHE +MTA
Sbjct: 32  VDDLRFVLTEECPQTPAANANRNVREAFDRWVKANDKARVYILASMTDVLAKKHEPLMTA 91

Query: 61  KEIMDSVQGMFGQQSTEAQHNA 83
           KEIMDS++ MFG+ S+  +H A
Sbjct: 92  KEIMDSLKAMFGEPSSTLRHEA 113

[Close]

BLAST of Tan0013116.1 vs. ExPASy TrEMBL
Match: A0A6J1DXQ5 (uncharacterized protein LOC111024457 OS=Momordica charantia OX=3673 GN=LOC111024457 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.8e-24
Identity = 54/82 (65.85%), Postives = 71/82 (86.59%), Query Frame = 0


Query: 1   MDDLKFVLTEECPQVSSSNITRNIRDAYDRWIKANDKAKVYMLASMFDILAKKHEGMMTA 60
           +DDL+FVLTEECPQ  ++N  RN+R+A+DRW+KANDKA+VY+LASM D+LAKKHE +MTA
Sbjct: 32  VDDLRFVLTEECPQTPATNANRNVREAFDRWVKANDKARVYILASMTDVLAKKHEPLMTA 91

Query: 61  KEIMDSVQGMFGQQSTEAQHNA 83
           KEIMDS++ MFG+ S+  +H A
Sbjct: 92  KEIMDSLKAMFGEPSSTLRHEA 113

[Close]

BLAST of Tan0013116.1 vs. ExPASy TrEMBL
Match: A0A6J1DFZ2 (uncharacterized protein LOC111020095 OS=Momordica charantia OX=3673 GN=LOC111020095 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 2.3e-24
Identity = 63/105 (60.00%), Postives = 79/105 (75.24%), Query Frame = 0


Query: 1   MDDLKFVLTEECPQVSSSNITRNIRDAYDRWIKANDKAKVYMLASMFDILAKKHEGMMTA 60
           +DDLKFVL E+CPQ S+ N T  +R AYDRWIKANDKAKVY+LAS+ D+LAKKHE  +TA
Sbjct: 32  IDDLKFVLQEDCPQASAPNATVAVRIAYDRWIKANDKAKVYILASISDVLAKKHEDTITA 91

Query: 61  KEIMDSVQGMFGQQSTEAQHNA-SSIYSTR----GCQRVHLFGIM 101
           KEIMDS+Q MFGQ S++A+H A   IY++R       R H+  +M
Sbjct: 92  KEIMDSLQSMFGQPSSQARHEALKFIYNSRMKEGSSVREHVLNLM 136

[Close]

BLAST of Tan0013116.1 vs. ExPASy TrEMBL
Match: A0A6J1DUZ9 (uncharacterized protein LOC111024294 OS=Momordica charantia OX=3673 GN=LOC111024294 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 3.0e-24
Identity = 54/82 (65.85%), Postives = 70/82 (85.37%), Query Frame = 0


Query: 1   MDDLKFVLTEECPQVSSSNITRNIRDAYDRWIKANDKAKVYMLASMFDILAKKHEGMMTA 60
           +DDL+FVLTEECPQ  + N  RN+R+A+DRW+KANDKA+VY+LASM D+LAKKHE +MTA
Sbjct: 32  VDDLQFVLTEECPQTPAENANRNVREAFDRWVKANDKARVYILASMTDVLAKKHEPLMTA 91

Query: 61  KEIMDSVQGMFGQQSTEAQHNA 83
           KEIMDS++ MFG+ S+  +H A
Sbjct: 92  KEIMDSLKAMFGEPSSTLRHEA 113

[Close]

BLAST of Tan0013116.1 vs. ExPASy TrEMBL
Match: A0A6J1DS54 (uncharacterized protein LOC111023904 OS=Momordica charantia OX=3673 GN=LOC111023904 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 5.2e-24
Identity = 54/82 (65.85%), Postives = 70/82 (85.37%), Query Frame = 0


Query: 1   MDDLKFVLTEECPQVSSSNITRNIRDAYDRWIKANDKAKVYMLASMFDILAKKHEGMMTA 60
           +DDL+FVLTEECPQ  + N  RN+R+A+DRW+KANDKA+VY+LASM D+LAKKHE +MTA
Sbjct: 32  VDDLRFVLTEECPQTPAVNANRNVREAFDRWVKANDKARVYILASMTDVLAKKHEPLMTA 91

Query: 61  KEIMDSVQGMFGQQSTEAQHNA 83
           KEIMDS++ MFG+ S+  +H A
Sbjct: 92  KEIMDSLKAMFGELSSTLRHEA 113

The following BLAST results are available for this feature:

BLAST of Tan0013116.1 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0013116.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157844.1	3.7e-24	65.85	uncharacterized protein LOC111024457 [Momordica charantia]	[more]
XP_022143540.1	3.7e-24	65.85	uncharacterized protein LOC111013417 [Momordica charantia]	[more]
XP_022152352.1	4.8e-24	60.00	uncharacterized protein LOC111020095 [Momordica charantia]	[more]
XP_022157632.1	6.3e-24	65.85	uncharacterized protein LOC111024294 [Momordica charantia]	[more]
XP_022157095.1	1.1e-23	65.85	uncharacterized protein LOC111023904 [Momordica charantia]	[more]

BLAST of Tan0013116.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CP29	1.8e-24	65.85	uncharacterized protein LOC111013417 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1DXQ5	1.8e-24	65.85	uncharacterized protein LOC111024457 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1DFZ2	2.3e-24	60.00	uncharacterized protein LOC111020095 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A6J1DUZ9	3.0e-24	65.85	uncharacterized protein LOC111024294 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1DS54	5.2e-24	65.85	uncharacterized protein LOC111023904 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]

BLAST of Tan0013116.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Tan0013116	Tan0013116	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0013116.1-exon	Tan0013116.1-exon-LG11:26507584..26507895	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0013116.1-cds	Tan0013116.1-cds-LG11:26507584..26507895	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Tan0013116.1	Tan0013116.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding